RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	KCNK5	O95279	499 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	SPATA31C1	P0DKV0	1188 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	CPB1	P15086	417 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	KCNE1	P15382	129 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	LIG1	P18858	919 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	CYP11B2	P19099	503 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	MUT	P22033	750 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	TXK	P42681	527 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	SOX4	Q06945	474 aa	Predicted RBP	13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	PTPA	Q15257	358 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	CATSPER3	Q86XQ3	398 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	HS6ST3	Q8IZP7	471 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	BEST2	Q8NFU1	509 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	SHKBP1	Q8TBC3	707 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	KIFAP3	Q92845	792 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	MTMR9	Q96QG7	549 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	POLR3C	Q9BUI4	534 aa	Predicted RBP	13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	VPS45	Q9NRW7	570 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	CNTN3	Q9P232	1028 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	TPCN1	Q9ULQ1	816 aa		13.61	□□□□□ -0.23
CAPN1-223	ENST00000533079	AXIN1	O15169	862 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	ATG13	O75143	517 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	LAMA1	P25391	3075 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	WEE1	P30291	646 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	MPL	P40238	635 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	SCRN1	Q12765	414 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	NR5A1	Q13285	461 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	COL9A2	Q14055	689 aa	Predicted RBP	13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	ACAP1	Q15027	740 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	ZNF568	Q3ZCX4	644 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	WDR44	Q5JSH3	913 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	RALGAPA1	Q6GYQ0	2036 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	TXNDC11	Q6PKC3	985 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	PADI6	Q6TGC4	694 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	TMC8	Q8IU68	726 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	KDF1	Q8NAX2	398 aa	Predicted RBP	13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	ERMN	Q8TAM6	284 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	ZC3H10	Q96K80	434 aa	Known RBP	13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	CDT1	Q9H211	546 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	KIF26A	Q9ULI4	1882 aa	Predicted RBP	13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	PCDHB8	Q9UN66	801 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	ASB3	Q9Y575	518 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079	ZZEF1	O43149	2961 aa		13.6	□□□□□ -0.23
CAPN1-223	ENST00000533079		A0A1W2PRU2	124 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	FAM205C	A6NFA0	338 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	DPYSL4	O14531	572 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	CCDC192	P0DO97	292 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	GJA1	P17302	382 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	RPA1	P27694	616 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	MCM4	P33991	863 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	SOX9	P48436	509 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	EPHB3	P54753	998 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	YWHAH	Q04917	246 aa	Predicted RBP	13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	KARS	Q15046	597 aa	Known RBP	13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	PON2	Q15165	354 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	ARHGAP15	Q53QZ3	475 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	NT5DC1	Q5TFE4	455 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	RNF19B	Q6ZMZ0	732 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	CAMKK1	Q8N5S9	505 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	DDX12P	Q92771	950 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	RSPRY1	Q96DX4	576 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	LRRC3	Q9BY71	257 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	RXFP3	Q9NSD7	469 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	GJB4	Q9NTQ9	266 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	USP20	Q9Y2K6	914 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	BAHCC1	Q9P281	2608 aa		13.59	□□□□□ -0.23
CAPN1-223	ENST00000533079	FAM208B	Q5VWN6	2430 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079		K7ERI5	159 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	MED24	O75448	989 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	MCF2	P10911	925 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	HAUS3	Q68CZ6	603 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	RNF43	Q68DV7	783 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	PSAPL1	Q6NUJ1	521 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	KBTBD6	Q86V97	674 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	ARID3B	Q8IVW6	561 aa	Predicted RBP	13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	CEP120	Q8N960	986 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	ZMAT2	Q96NC0	199 aa	Known RBP	13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	ACAP3	Q96P50	834 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	EDEM2	Q9BV94	578 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	KIFC3	Q9BVG8	833 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	MRPL4	Q9BYD3	311 aa	Known RBP	13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	PTPRH	Q9HD43	1115 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	C2orf42	Q9NWW7	574 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	GTSE1	Q9NYZ3	720 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	HSFX1	Q9UBD0	423 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	ZMYM5	Q9UJ78	669 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	RALY	Q9UKM9	306 aa	Known RBP	13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	ZMIZ1	Q9ULJ6	1067 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	SLC8A2	Q9UPR5	921 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	CEP295	Q9C0D2	2601 aa		13.58	□□□□□ -0.24
CAPN1-223	ENST00000533079	PFKFB2	O60825	505 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	OAZ2	O95190	189 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	MARCKS	P29966	332 aa	Predicted RBP	13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	ALDH1A3	P47895	512 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	MCM2	P49736	904 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	ORC2	Q13416	577 aa	Predicted RBP	13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	ELF2	Q15723	593 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	ITPRIPL2	Q3MIP1	535 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	ITIH5	Q86UX2	942 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	BPIFB1	Q8TDL5	484 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms