RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 NR1H2P55055 460 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 TBC1D9BQ66K14 1250 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 PPP1R18Q6NYC8 613 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 MAB21L3Q8N8X9 362 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 TMEM245Q9H330 911 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 DBR1Q9UK59 544 aaKnown RBP13.93□□□□□ -0.18
USP40-208ENST00000450966 PPME1Q9Y570 386 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 TEX33O43247 280 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 DLATP10515 647 aaKnown RBP13.93□□□□□ -0.18
USP40-208ENST00000450966 UBXN2AP68543 259 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 CCDC137Q6PK04 289 aaKnown RBP13.93□□□□□ -0.18
USP40-208ENST00000450966 ATXN2LQ8WWM7 1075 aaKnown RBP13.93□□□□□ -0.18
USP40-208ENST00000450966 ZNF577Q9BSK1 485 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 PHTF1Q9UMS5 762 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 RFX7Q2KHR2 1363 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 ABCB11O95342 1321 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 CASP5P51878 434 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 COPAP53621 1224 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 USP46P62068 366 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 PRPF39Q86UA1 669 aaKnown RBP13.92□□□□□ -0.18
USP40-208ENST00000450966 GCNAQ96QF7 691 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 DCUN1D5Q9BTE7 237 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 OSBPL10Q9BXB5 764 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 FOXP3Q9BZS1 431 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 MRPL47Q9HD33 250 aaKnown RBP13.92□□□□□ -0.18
USP40-208ENST00000450966 MPP6Q9NZW5 540 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 DNAJC12Q9UKB3 198 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 AK5Q9Y6K8 562 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 PSTPIP1O43586 416 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 TRAPPC3O43617 180 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 SAT1P21673 171 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 MFAP3P55082 362 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 FAAH2Q6GMR7 532 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 TRIM69Q86WT6 500 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 ZNF579Q8NAF0 562 aaKnown RBP13.92□□□□□ -0.18
USP40-208ENST00000450966 GLMNQ92990 594 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 DMTF1Q9Y222 760 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 MYRFQ9Y2G1 1151 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 M0R2C6 588 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 PJA2O43164 708 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 KLHL41O60662 606 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 PYGMP11217 842 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 JAK3P52333 1124 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 IFRD2Q12894 506 aaPredicted RBP13.92□□□□□ -0.18
USP40-208ENST00000450966 TKFCQ3LXA3 575 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 MIGA2Q7L4E1 593 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 RASSF5Q8WWW0 418 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 DPF2Q92785 391 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 PUS3Q9BZE2 481 aaKnown RBP13.92□□□□□ -0.18
USP40-208ENST00000450966 RPRD1BQ9NQG5 326 aaKnown RBP13.92□□□□□ -0.18
USP40-208ENST00000450966 PCDHA4Q9UN74 947 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 CEP152O94986 1710 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 PNMA8CA0A1B0GUJ8 204 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 SORBS3O60504 671 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 PDE9AO76083 593 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 ALBP02768 609 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 EFHC1Q5JVL4 640 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 RAD9BQ6WBX8 426 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 ERICH1Q86X53 443 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 PPM1KQ8N3J5 372 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 ZFAND2BQ8WV99 257 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 POMGNT1Q8WZA1 660 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 RMDN1Q96DB5 314 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 COG4Q9H9E3 785 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 GPBP1L1Q9HC44 474 aaPredicted RBP13.92□□□□□ -0.18
USP40-208ENST00000450966 ABCF3Q9NUQ8 709 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 A0A087WXM4 84 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 RAD51CO43502 376 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 MED26O95402 600 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 SRGAP2CP0DJJ0 459 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 SRGAP2BP0DMP2 458 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 CTTNQ14247 550 aaKnown RBP13.92□□□□□ -0.18
USP40-208ENST00000450966 SGSM1Q2NKQ1 1148 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 ARMC4Q5T2S8 1044 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 MINPP1Q9UNW1 487 aa13.92□□□□□ -0.18
USP40-208ENST00000450966 A0A0D9SFI3 127 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 ASB14A6NK59 587 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 GOLGA8JA6NMD2 632 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 CENPXA8MT69 81 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 USP17L10C9JJH3 530 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 CHEK2O96017 543 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 PLIN5Q00G26 463 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 GFPT1Q06210 699 aaPredicted RBP13.91□□□□□ -0.18
USP40-208ENST00000450966 DGUOKQ16854 277 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 MDH1BQ5I0G3 518 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 STRIP1Q5VSL9 837 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 RFX6Q8HWS3 928 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 TAB3Q8N5C8 712 aaPredicted RBP13.91□□□□□ -0.18
USP40-208ENST00000450966 ASZ1Q8WWH4 475 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 EDC3Q96F86 508 aaKnown RBP13.91□□□□□ -0.18
USP40-208ENST00000450966 ISCA1Q9BUE6 129 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 ATPIF1Q9UII2 106 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 NRXN1Q9ULB1 1477 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 LRRC53A6NM62 1247 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 KRT1P04264 644 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 PRLRP16471 622 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 PIK3CAP42336 1068 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 PTDSS1P48651 473 aaKnown RBP13.91□□□□□ -0.18
USP40-208ENST00000450966 GALK1P51570 392 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms