RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 CCDC65Q8IXS2 484 aa21.03■□□□□ 0.96
USP40-207ENST00000450940 KCNG4Q8TDN1 519 aa21.03■□□□□ 0.96
USP40-207ENST00000450940 FOXD4L4Q8WXT5 416 aaPredicted RBP21.03■□□□□ 0.96
USP40-207ENST00000450940 FGF13Q92913 245 aa21.03■□□□□ 0.96
USP40-207ENST00000450940 FAM212AQ96EL1 285 aa21.03■□□□□ 0.96
USP40-207ENST00000450940 FGFBP2Q9BYJ0 223 aa21.03■□□□□ 0.96
USP40-207ENST00000450940 HCFC1R1Q9NWW0 138 aa21.03■□□□□ 0.96
USP40-207ENST00000450940 AFF4Q9UHB7 1163 aaKnown RBP21.03■□□□□ 0.96
USP40-207ENST00000450940 POLIQ9UNA4 740 aa21.03■□□□□ 0.96
USP40-207ENST00000450940 GARTP22102 1010 aa21.02■□□□□ 0.96
USP40-207ENST00000450940 ARPP19P56211 112 aa21.02■□□□□ 0.96
USP40-207ENST00000450940 PKP1Q13835 747 aa21.02■□□□□ 0.96
USP40-207ENST00000450940 PABPC1LQ4VXU2 614 aaKnown RBP21.02■□□□□ 0.96
USP40-207ENST00000450940 NT5DC4Q86YG4 428 aa21.02■□□□□ 0.96
USP40-207ENST00000450940 IQUBQ8NA54 791 aa21.02■□□□□ 0.96
USP40-207ENST00000450940 PRSS33Q8NF86 280 aa21.02■□□□□ 0.96
USP40-207ENST00000450940 ITFG1Q8TB96 612 aa21.02■□□□□ 0.96
USP40-207ENST00000450940 TRIM9Q9C026 710 aa21.02■□□□□ 0.96
USP40-207ENST00000450940 WNT16Q9UBV4 365 aa21.02■□□□□ 0.96
USP40-207ENST00000450940 TSC2P49815 1807 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 OR6C75A6NL08 312 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 PRRG1O14668 218 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 SPTLC1O15269 473 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 NARSO43776 548 aaKnown RBP21.01■□□□□ 0.95
USP40-207ENST00000450940 IL18RAPO95256 599 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 SRFP11831 508 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 PTPN2P17706 415 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 HOXD11P31277 338 aaPredicted RBP21.01■□□□□ 0.95
USP40-207ENST00000450940 CLCN5P51795 746 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 AMPD3Q01432 767 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 NHLH1Q02575 133 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 DSTYKQ6XUX3 929 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 SENP8Q96LD8 212 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 TMEM206Q9H813 350 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 CYP4F11Q9HBI6 524 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 RCOR1Q9UKL0 485 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 PCDHA7Q9UN72 937 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 TIMM13Q9Y5L4 95 aaPredicted RBP21.01■□□□□ 0.95
USP40-207ENST00000450940 INSL5Q9Y5Q6 135 aa21.01■□□□□ 0.95
USP40-207ENST00000450940 TCHHQ07283 1943 aa21■□□□□ 0.95
USP40-207ENST00000450940 LDHAP00338 332 aaKnown RBP21■□□□□ 0.95
USP40-207ENST00000450940 LRG1P02750 347 aa21■□□□□ 0.95
USP40-207ENST00000450940 CYP11A1P05108 521 aa21■□□□□ 0.95
USP40-207ENST00000450940 RHOP08100 348 aa21■□□□□ 0.95
USP40-207ENST00000450940 NPR3P17342 541 aa21■□□□□ 0.95
USP40-207ENST00000450940 MYBPC2Q14324 1141 aa21■□□□□ 0.95
USP40-207ENST00000450940 ASTLQ6HA08 431 aaPredicted RBP21■□□□□ 0.95
USP40-207ENST00000450940 RNF19BQ6ZMZ0 732 aa21■□□□□ 0.95
USP40-207ENST00000450940 USP37Q86T82 979 aa21■□□□□ 0.95
USP40-207ENST00000450940 NPAS3Q8IXF0 933 aa21■□□□□ 0.95
USP40-207ENST00000450940 EFCAB13Q8IY85 973 aa21■□□□□ 0.95
USP40-207ENST00000450940 DHX58Q96C10 678 aa21■□□□□ 0.95
USP40-207ENST00000450940 C7orf25Q9BPX7 421 aa21■□□□□ 0.95
USP40-207ENST00000450940 MAGEF1Q9HAY2 307 aa21■□□□□ 0.95
USP40-207ENST00000450940 DPP3Q9NY33 737 aa21■□□□□ 0.95
USP40-207ENST00000450940 CFAP45Q9UL16 551 aa21■□□□□ 0.95
USP40-207ENST00000450940 NUMBLQ9Y6R0 609 aa21■□□□□ 0.95
USP40-207ENST00000450940 PIEZO1Q92508 2521 aa21■□□□□ 0.95
USP40-207ENST00000450940 MICAL2O94851 1124 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 VNN2O95498 520 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 ADCY1Q08828 1119 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 GPR17Q13304 367 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 SLC5A9Q2M3M2 681 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 OVOS1Q6IE37 1185 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 PARM1Q6UWI2 310 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 BRSK2Q8IWQ3 736 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 SYCP3Q8IZU3 236 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 ZSWIM2Q8NEG5 633 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 FGF14Q92915 247 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 BORCS6Q96GS4 357 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 FAM213AQ9BRX8 229 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 SLC2A4RGQ9NR83 387 aa20.99■□□□□ 0.95
USP40-207ENST00000450940 KIAA0391O15091 583 aaKnown RBP20.98■□□□□ 0.95
USP40-207ENST00000450940 PRPF6O94906 941 aaKnown RBP20.98■□□□□ 0.95
USP40-207ENST00000450940 ODC1P11926 461 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 CPB1P15086 417 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 PTPN5P54829 565 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 WNT7BP56706 349 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 TCF15Q12870 199 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 FOXD4L6Q3SYB3 417 aaPredicted RBP20.98■□□□□ 0.95
USP40-207ENST00000450940 PRSS36Q5K4E3 855 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 RESP18Q5W5W9 173 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 FOXD4L3Q6VB84 417 aaPredicted RBP20.98■□□□□ 0.95
USP40-207ENST00000450940 STXBP4Q6ZWJ1 553 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 MTSS1LQ765P7 747 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 EPM2AIP1Q7L775 607 aaPredicted RBP20.98■□□□□ 0.95
USP40-207ENST00000450940 TMEM105Q8N8V8 129 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 RPP25Q9BUL9 199 aaKnown RBP20.98■□□□□ 0.95
USP40-207ENST00000450940 GDE1Q9NZC3 331 aa20.98■□□□□ 0.95
USP40-207ENST00000450940 MRPS23Q9Y3D9 190 aaKnown RBP20.98■□□□□ 0.95
USP40-207ENST00000450940 POLR2DO15514 142 aaKnown RBP20.97■□□□□ 0.95
USP40-207ENST00000450940 EXTL3O43909 919 aa20.97■□□□□ 0.95
USP40-207ENST00000450940 HOXD13P35453 343 aa20.97■□□□□ 0.95
USP40-207ENST00000450940 ME1P48163 572 aa20.97■□□□□ 0.95
USP40-207ENST00000450940 DNM1Q05193 864 aaKnown RBP20.97■□□□□ 0.95
USP40-207ENST00000450940 EHHADHQ08426 723 aa20.97■□□□□ 0.95
USP40-207ENST00000450940 CWF19L1Q69YN2 538 aaKnown RBP20.97■□□□□ 0.95
USP40-207ENST00000450940 POTEHQ6S545 545 aa20.97■□□□□ 0.95
USP40-207ENST00000450940 SIX5Q8N196 739 aa20.97■□□□□ 0.95
USP40-207ENST00000450940 SPRYD3Q8NCJ5 442 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 126.8 ms