RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 ROPN1BQ9BZX4 212 aaPredicted RBP16.9■□□□□ 0.3
NPHP3-201ENST00000337331 ROPN1Q9HAT0 212 aaPredicted RBP16.9■□□□□ 0.3
NPHP3-201ENST00000337331 IL1RAPL1Q9NZN1 696 aa16.9■□□□□ 0.3
NPHP3-201ENST00000337331 PSMC5P62195 406 aa16.89■□□□□ 0.3
NPHP3-201ENST00000337331 TSPY1Q01534 308 aa16.89■□□□□ 0.3
NPHP3-201ENST00000337331 SLC27A3Q5K4L6 730 aa16.89■□□□□ 0.3
NPHP3-201ENST00000337331 MARK2Q7KZI7 788 aaKnown RBP16.89■□□□□ 0.3
NPHP3-201ENST00000337331 WDR75Q8IWA0 830 aaKnown RBP16.89■□□□□ 0.3
NPHP3-201ENST00000337331 MKNK1Q9BUB5 465 aa16.89■□□□□ 0.3
NPHP3-201ENST00000337331 TRAIPQ9BWF2 469 aa16.89■□□□□ 0.3
NPHP3-201ENST00000337331 GNA15P30679 374 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 TBL3Q12788 808 aaKnown RBP16.89■□□□□ 0.29
NPHP3-201ENST00000337331 ZNF699Q32M78 642 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 LMBRD2Q68DH5 695 aaPredicted RBP16.89■□□□□ 0.29
NPHP3-201ENST00000337331 LDHDQ86WU2 507 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 RHOT1Q8IXI2 618 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 SLC25A41Q8N5S1 370 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 IQGAP1P46940 1657 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 CFLARO15519 480 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 NDUFB10O96000 172 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 VAV1P15498 845 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 RFX1P22670 979 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 TBC1D16Q8TBP0 767 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 ABHD8Q96I13 439 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 MAGEB18Q96M61 343 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 FAM49AQ9H0Q0 323 aaPredicted RBP16.89■□□□□ 0.29
NPHP3-201ENST00000337331 ZHX2Q9Y6X8 837 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 C1orf167Q5SNV9 1468 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 ZC3H4Q9UPT8 1303 aaKnown RBP16.89■□□□□ 0.29
NPHP3-201ENST00000337331 ZNF263O14978 683 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 XPO1O14980 1071 aaKnown RBP16.89■□□□□ 0.29
NPHP3-201ENST00000337331 NTSR2O95665 410 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 CALB1P05937 261 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 PAX3P23760 479 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 STXBP2Q15833 593 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 TMEM259Q4ZIN3 620 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 ATG16L1Q676U5 607 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 CYFIP1Q7L576 1253 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 FBXO33Q7Z6M2 555 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 SIX6OS1Q8N1H7 587 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 KLC2Q9H0B6 622 aa16.89■□□□□ 0.29
NPHP3-201ENST00000337331 NR1H3Q13133 447 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 TRMT10CQ7L0Y3 403 aaKnown RBP16.88■□□□□ 0.29
NPHP3-201ENST00000337331 ZNF554Q86TJ5 538 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 RTKN2Q8IZC4 609 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 PPM1NQ8N819 430 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 SLC35G2Q8TBE7 412 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 ACTRT1Q8TDG2 376 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 DEPDC1BQ8WUY9 529 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 C17orf50Q8WW18 174 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 RPS6KL1Q9Y6S9 549 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 TPBGLP0DKB5 382 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 SFNP31947 248 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 EDRF1Q3B7T1 1238 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 CRLF3Q8IUI8 442 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 C18orf8Q96DM3 657 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 STK33Q9BYT3 514 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 SRGAP2BP0DMP2 458 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 FMO5P49326 533 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 LIN52Q52LA3 116 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 RC3H1Q5TC82 1133 aaKnown RBP16.88■□□□□ 0.29
NPHP3-201ENST00000337331 IZUMO3Q5VZ72 239 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 C4orf50Q6ZRC1 276 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 NEUROG2Q9H2A3 272 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 UBE4BO95155 1302 aa16.88■□□□□ 0.29
NPHP3-201ENST00000337331 SSTR3P32745 418 aaPredicted RBP16.87■□□□□ 0.29
NPHP3-201ENST00000337331 ZNF568Q3ZCX4 644 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 ZBED8Q8IZ13 594 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 C1orf131Q8NDD1 294 aaKnown RBP16.87■□□□□ 0.29
NPHP3-201ENST00000337331 PPP2R3CQ969Q6 453 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 DNAJC1Q96KC8 554 aaKnown RBP16.87■□□□□ 0.29
NPHP3-201ENST00000337331 ARHGEF38Q9NXL2 777 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 APEX2Q9UBZ4 518 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.87■□□□□ 0.29
NPHP3-201ENST00000337331 KRT38O76015 456 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 PSMG1O95456 288 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 ABL2P42684 1182 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 STX1BP61266 288 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 PDIA2Q13087 525 aaKnown RBP16.87■□□□□ 0.29
NPHP3-201ENST00000337331 SLC30A5Q8TAD4 765 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 PSPC1Q8WXF1 523 aaKnown RBP16.87■□□□□ 0.29
NPHP3-201ENST00000337331 TTC25Q96NG3 672 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 FAM193BQ96PV7 902 aaPredicted RBP16.87■□□□□ 0.29
NPHP3-201ENST00000337331 ETNK2Q9NVF9 386 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 IPO11Q9UI26 975 aaKnown RBP16.87■□□□□ 0.29
NPHP3-201ENST00000337331 ZNF232Q9UNY5 417 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 SHPRHQ149N8 1683 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 MYBP10242 640 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 MMP13P45452 471 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 MAPK7Q13164 816 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 HIC1Q14526 733 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 KIF22Q14807 665 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 FIGNQ5HY92 759 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 FNDC3AQ9Y2H6 1198 aaKnown RBP16.87■□□□□ 0.29
NPHP3-201ENST00000337331 EIF2B2P49770 351 aaKnown RBP16.87■□□□□ 0.29
NPHP3-201ENST00000337331 KRT17Q04695 432 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 CNPY1Q3B7I2 92 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 ZNF507Q8TCN5 953 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 OLFML3Q9NRN5 406 aa16.87■□□□□ 0.29
NPHP3-201ENST00000337331 EPS15L1Q9UBC2 864 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms