RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 FGAP02671 866 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 AP3B2Q13367 1082 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 DCTN2Q13561 401 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 DPCR1Q3MIW9 517 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 TTC23Q5W5X9 447 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 BTN2A1Q7KYR7 527 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 ZNF786Q8N393 782 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 MFAP3LO75121 409 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 DDR2Q16832 855 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 CDK20Q8IZL9 346 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 TNIP3Q96KP6 325 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 SH3GLB2Q9NR46 395 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 ATAD3AQ9NVI7 634 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 COMMD9Q9P000 198 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 MMP1P03956 469 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 FCGR1AP12314 374 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 PDIA3P30101 505 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 CDH6P55285 790 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 CSNK2BP67870 215 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 LGALS3BPQ08380 585 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 FAR2Q96K12 515 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 IPPQ9Y573 584 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 CCDC189A1A4V9 331 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 ATP9BO43861 1147 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 EIF2S3P41091 472 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 EIF3EP60228 445 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 CYP51A1Q16850 503 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 VN1R5Q7Z5H4 357 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 CENPLQ8N0S6 344 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 SPICE1Q8N0Z3 855 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 SLC52A2Q9HAB3 445 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 STX11O75558 287 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 GSTM1P09488 218 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 FBXO38Q6PIJ6 1188 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 ARHGAP27Q6ZUM4 889 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 ZNF513Q8N8E2 541 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 SGSM3Q96HU1 749 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 MRPL4Q9BYD3 311 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 NEK6Q9HC98 313 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 COQ6Q9Y2Z9 468 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 PSTPIP1O43586 416 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 BYSLQ13895 437 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 ZCWPW2Q504Y3 356 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 MDH1BQ5I0G3 518 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 ZNF560Q96MR9 790 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 ZMYM3Q14202 1370 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 SNX17Q15036 470 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 TTLL9Q3SXZ7 439 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 PID1Q7Z2X4 250 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 JADE3Q92613 823 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 CCDC126Q96EE4 140 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 VCLP18206 1134 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 RCVRNP35243 200 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 NLRP10Q86W26 655 aa14.55□□□□□ -0.08
CCDC88A-201ENST00000263630 CCDC166P0CW27 439 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 EPB42P16452 691 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 POU4F1Q01851 419 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 IDI1Q13907 227 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 SYCP2LQ5T4T6 812 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 CHP2O43745 196 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 CDH16O75309 829 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 S100A6P06703 90 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 CLTBP09497 229 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 SCNN1DP51172 638 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 IFNEQ86WN2 208 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 CHSY1Q86X52 802 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 HS6ST3Q8IZP7 471 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 CXorf56Q9H5V9 222 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 BTG4Q9NY30 223 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 EIF4E1BA6NMX2 242 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 APRTP07741 180 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 TGM3Q08188 693 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 C4orf22Q6V702 233 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 CAMK1DQ8IU85 385 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 CYFIP2Q96F07 1278 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 CAAP1Q9H8G2 361 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 TRAPPC8Q9Y2L5 1435 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 PNMA6FA0A0J9YX94 578 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 FAM47DPA6NHR8 397 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 ZNF200P98182 395 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 NFX1Q12986 1120 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 CACTIN-AS1Q8N1I8 211 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 HERC5Q9UII4 1024 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 PIK3C2GO75747 1445 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 KDM5BQ9UGL1 1544 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 SPRP35270 261 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 GRK3P35626 688 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 PSMD4P55036 377 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 C18orf25Q96B23 403 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 SMAD5Q99717 465 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 BCS1LQ9Y276 419 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 GRIK1P39086 918 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 IRAK1BP1Q5VVH5 260 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 RCOR2Q8IZ40 523 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 MAGED4Q96JG8 741 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 UBE3CQ15386 1083 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 EPHX4Q8IUS5 362 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 CHAMP1Q96JM3 812 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 PLEKHA5Q9HAU0 1116 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms