RNA–Protein interactions for RNA: ENST00000638959.1

LMBR1-222, Transcript of limb development membrane protein 1, human

TSL 5 BASIC

Gene LMBR1, Length 93 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMBR1-222	ENST00000638959	HS6ST3	Q8IZP7	471 aa		5.16	□□□□□ -1.58
LMBR1-222	ENST00000638959	DDX12P	Q92771	950 aa		5.16	□□□□□ -1.58
LMBR1-222	ENST00000638959	FAM198A	Q9UFP1	575 aa		5.16	□□□□□ -1.58
LMBR1-222	ENST00000638959	C3orf80	F5H4A9	247 aa		5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	SNRPB	P14678	240 aa	Known RBP	5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	PRSS12	P56730	875 aa		5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	EN1	Q05925	392 aa	Predicted RBP	5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	NBR1	Q14596	966 aa		5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	MFSD10	Q14728	455 aa		5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	LMOD2	Q6P5Q4	547 aa		5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	BLOC1S3	Q6QNY0	202 aa		5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	SLF2	Q8IX21	1173 aa		5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	RYDEN	Q9NUL5	291 aa	Known RBP	5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	PKD2L1	Q9P0L9	805 aa		5.15	□□□□□ -1.59
LMBR1-222	ENST00000638959	SLC16A10	Q8TF71	515 aa		5.14	□□□□□ -1.59
LMBR1-222	ENST00000638959	PRR14	Q9BWN1	585 aa		5.14	□□□□□ -1.59
LMBR1-222	ENST00000638959	SLC4A3	P48751	1232 aa		5.13	□□□□□ -1.59
LMBR1-222	ENST00000638959	SMCP	P49901	116 aa	Predicted RBP	5.13	□□□□□ -1.59
LMBR1-222	ENST00000638959	PKD2	Q13563	968 aa		5.13	□□□□□ -1.59
LMBR1-222	ENST00000638959	SWT1	Q5T5J6	900 aa	Known RBP	5.13	□□□□□ -1.59
LMBR1-222	ENST00000638959	NUDT18	Q6ZVK8	323 aa		5.13	□□□□□ -1.59
LMBR1-222	ENST00000638959	CYP4X1	Q8N118	509 aa		5.13	□□□□□ -1.59
LMBR1-222	ENST00000638959	LOR	P23490	312 aa	Predicted RBP	5.12	□□□□□ -1.59
LMBR1-222	ENST00000638959	GMPR	P36959	345 aa		5.12	□□□□□ -1.59
LMBR1-222	ENST00000638959	PLA2G2C	Q5R387	149 aa		5.12	□□□□□ -1.59
LMBR1-222	ENST00000638959	KCTD17	Q8N5Z5	321 aa		5.12	□□□□□ -1.59
LMBR1-222	ENST00000638959	SENP2	Q9HC62	589 aa		5.12	□□□□□ -1.59
LMBR1-222	ENST00000638959	ATP13A2	Q9NQ11	1180 aa		5.12	□□□□□ -1.59
LMBR1-222	ENST00000638959	DPYSL4	O14531	572 aa		5.11	□□□□□ -1.59
LMBR1-222	ENST00000638959	TRIM47	Q96LD4	638 aa		5.11	□□□□□ -1.59
LMBR1-222	ENST00000638959	TOR4A	Q9NXH8	423 aa		5.11	□□□□□ -1.59
LMBR1-222	ENST00000638959	CERK	Q8TCT0	537 aa		5.1	□□□□□ -1.59
LMBR1-222	ENST00000638959	CHGA	P10645	457 aa	Known RBP	5.09	□□□□□ -1.59
LMBR1-222	ENST00000638959	NKX1-1	Q15270	411 aa	Predicted RBP	5.09	□□□□□ -1.59
LMBR1-222	ENST00000638959	IRF7	Q92985	503 aa		5.09	□□□□□ -1.59
LMBR1-222	ENST00000638959	TTC24	A2A3L6	582 aa	Predicted RBP	5.08	□□□□□ -1.6
LMBR1-222	ENST00000638959	ADH1B	P00325	375 aa		5.08	□□□□□ -1.6
LMBR1-222	ENST00000638959	SLC6A16	Q9GZN6	736 aa		5.08	□□□□□ -1.6
LMBR1-222	ENST00000638959	KIFC2	Q96AC6	838 aa		5.07	□□□□□ -1.6
LMBR1-222	ENST00000638959	NXF1	Q9UBU9	619 aa	Known RBP	5.07	□□□□□ -1.6
LMBR1-222	ENST00000638959	KCNMA1	Q12791	1236 aa		5.05	□□□□□ -1.6
LMBR1-222	ENST00000638959	XP32	Q5T750	250 aa		5.05	□□□□□ -1.6
LMBR1-222	ENST00000638959	RPIA	P49247	311 aa		5.03	□□□□□ -1.6
LMBR1-222	ENST00000638959	VEGFB	P49765	207 aa		5.03	□□□□□ -1.6
LMBR1-222	ENST00000638959	RBM27	Q9P2N5	1060 aa	Known RBP	5.03	□□□□□ -1.6
LMBR1-222	ENST00000638959	CD2BP2	O95400	341 aa	Known RBP	5.02	□□□□□ -1.61
LMBR1-222	ENST00000638959	KMT5B	Q4FZB7	885 aa		5.02	□□□□□ -1.61
LMBR1-222	ENST00000638959	TMEM151A	Q8N4L1	468 aa		5.02	□□□□□ -1.61
LMBR1-222	ENST00000638959	CDHR5	Q9HBB8	845 aa		5.02	□□□□□ -1.61
LMBR1-222	ENST00000638959	NR1I2	O75469	434 aa		5.01	□□□□□ -1.61
LMBR1-222	ENST00000638959	SMPD1	P17405	629 aa		5.01	□□□□□ -1.61
LMBR1-222	ENST00000638959	CAMK2B	Q13554	666 aa		5.01	□□□□□ -1.61
LMBR1-222	ENST00000638959	NPAS3	Q8IXF0	933 aa		5.01	□□□□□ -1.61
LMBR1-222	ENST00000638959	DNAJC5	Q9H3Z4	198 aa		5.01	□□□□□ -1.61
LMBR1-222	ENST00000638959	ERBB4	Q15303	1308 aa		5	□□□□□ -1.61
LMBR1-222	ENST00000638959	ACTN4	O43707	911 aa	Known RBP	5	□□□□□ -1.61
LMBR1-222	ENST00000638959	GDF11	O95390	407 aa		5	□□□□□ -1.61
LMBR1-222	ENST00000638959	GSK3A	P49840	483 aa		5	□□□□□ -1.61
LMBR1-222	ENST00000638959	KRTAP4-8	Q9BYQ9	185 aa		5	□□□□□ -1.61
LMBR1-222	ENST00000638959		H3BM21	787 aa		4.99	□□□□□ -1.61
LMBR1-222	ENST00000638959	CFH	P08603	1231 aa		4.99	□□□□□ -1.61
LMBR1-222	ENST00000638959	PRIM1	P49642	420 aa	Known RBP	4.99	□□□□□ -1.61
LMBR1-222	ENST00000638959	PADI6	Q6TGC4	694 aa		4.99	□□□□□ -1.61
LMBR1-222	ENST00000638959	FCF1	Q9Y324	198 aa	Known RBP	4.99	□□□□□ -1.61
LMBR1-222	ENST00000638959	PDIA6	Q15084	440 aa		4.98	□□□□□ -1.61
LMBR1-222	ENST00000638959	SNIP1	Q8TAD8	396 aa	Known RBP	4.98	□□□□□ -1.61
LMBR1-222	ENST00000638959	GRXCR2	A6NFK2	248 aa		4.97	□□□□□ -1.61
LMBR1-222	ENST00000638959		J3QL48	77 aa		4.97	□□□□□ -1.61
LMBR1-222	ENST00000638959	RASSF7	Q02833	373 aa		4.97	□□□□□ -1.61
LMBR1-222	ENST00000638959	SPSB2	Q99619	263 aa		4.97	□□□□□ -1.61
LMBR1-222	ENST00000638959	RNF225	M0QZC1	329 aa	Predicted RBP	4.96	□□□□□ -1.62
LMBR1-222	ENST00000638959	GPAT2	Q6NUI2	795 aa		4.96	□□□□□ -1.62
LMBR1-222	ENST00000638959	CADPS2	Q86UW7	1296 aa		4.96	□□□□□ -1.62
LMBR1-222	ENST00000638959	HPS1	Q92902	700 aa		4.96	□□□□□ -1.62
LMBR1-222	ENST00000638959	ZBTB24	O43167	697 aa	Predicted RBP	4.95	□□□□□ -1.62
LMBR1-222	ENST00000638959	GTPBP6	O43824	516 aa	Predicted RBP	4.95	□□□□□ -1.62
LMBR1-222	ENST00000638959	TTC13	Q8NBP0	860 aa		4.95	□□□□□ -1.62
LMBR1-222	ENST00000638959	EYA1	Q99502	592 aa		4.95	□□□□□ -1.62
LMBR1-222	ENST00000638959	SPDYE16	A6NNV3	312 aa	Predicted RBP	4.94	□□□□□ -1.62
LMBR1-222	ENST00000638959	WNT7A	O00755	349 aa		4.94	□□□□□ -1.62
LMBR1-222	ENST00000638959	SCUBE3	Q8IX30	993 aa		4.94	□□□□□ -1.62
LMBR1-222	ENST00000638959	BMP1	P13497	986 aa		4.93	□□□□□ -1.62
LMBR1-222	ENST00000638959	DNAJB2	P25686	324 aa		4.93	□□□□□ -1.62
LMBR1-222	ENST00000638959	MRGPRX2	Q96LB1	330 aa		4.93	□□□□□ -1.62
LMBR1-222	ENST00000638959	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.92	□□□□□ -1.62
LMBR1-222	ENST00000638959	PUS10	Q3MIT2	529 aa	Known RBP	4.92	□□□□□ -1.62
LMBR1-222	ENST00000638959	PSMG3-AS1	Q96PY0	264 aa		4.92	□□□□□ -1.62
LMBR1-222	ENST00000638959	IGHA1	P01876	353 aa		4.91	□□□□□ -1.62
LMBR1-222	ENST00000638959	KRTAP9-2	Q9BYQ4	174 aa		4.9	□□□□□ -1.63
LMBR1-222	ENST00000638959	TMEM134	Q9H6X4	195 aa		4.9	□□□□□ -1.63
LMBR1-222	ENST00000638959	KRTAP9-6	A0A140TA67	174 aa		4.89	□□□□□ -1.63
LMBR1-222	ENST00000638959	OSBP	P22059	807 aa		4.89	□□□□□ -1.63
LMBR1-222	ENST00000638959	KRTAP1-3	Q8IUG1	177 aa		4.89	□□□□□ -1.63
LMBR1-222	ENST00000638959	REPIN1	Q9BWE0	567 aa	Known RBP	4.89	□□□□□ -1.63
LMBR1-222	ENST00000638959	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	4.89	□□□□□ -1.63
LMBR1-222	ENST00000638959	SLC10A3	P09131	477 aa		4.88	□□□□□ -1.63
LMBR1-222	ENST00000638959	TRIM32	Q13049	653 aa		4.88	□□□□□ -1.63
LMBR1-222	ENST00000638959	TRIM46	Q7Z4K8	759 aa		4.88	□□□□□ -1.63
LMBR1-222	ENST00000638959	PRDM9	Q9NQV7	894 aa		4.88	□□□□□ -1.63
LMBR1-222	ENST00000638959	NPDC1	Q9NQX5	325 aa	Predicted RBP	4.88	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms