RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 DACH1Q9UI36 760 aa5.81□□□□□ -1.48
VIM-210ENST00000637053 ZNF697Q5TEC3 545 aa5.8□□□□□ -1.48
VIM-210ENST00000637053 TTC13Q8NBP0 860 aa5.8□□□□□ -1.48
VIM-210ENST00000637053 ANKLE1Q8NAG6 615 aa5.79□□□□□ -1.48
VIM-210ENST00000637053 PCDHB3Q9Y5E6 796 aa5.79□□□□□ -1.48
VIM-210ENST00000637053 GRXCR2A6NFK2 248 aa5.78□□□□□ -1.48
VIM-210ENST00000637053 SPDYE16A6NNV3 312 aaPredicted RBP5.78□□□□□ -1.48
VIM-210ENST00000637053 S1PR4O95977 384 aa5.78□□□□□ -1.48
VIM-210ENST00000637053 OSBPP22059 807 aa5.78□□□□□ -1.48
VIM-210ENST00000637053 PLA2G2CQ5R387 149 aa5.78□□□□□ -1.48
VIM-210ENST00000637053 SLF2Q8IX21 1173 aa5.78□□□□□ -1.48
VIM-210ENST00000637053 NPDC1Q9NQX5 325 aaPredicted RBP5.78□□□□□ -1.48
VIM-210ENST00000637053 RBM27Q9P2N5 1060 aaKnown RBP5.78□□□□□ -1.48
VIM-210ENST00000637053 WFS1O76024 890 aa5.77□□□□□ -1.49
VIM-210ENST00000637053 LCE2CQ5TA81 110 aa5.77□□□□□ -1.49
VIM-210ENST00000637053 PADI6Q6TGC4 694 aa5.77□□□□□ -1.49
VIM-210ENST00000637053 EYA1Q99502 592 aa5.77□□□□□ -1.49
VIM-210ENST00000637053 NFX1Q12986 1120 aaKnown RBP5.76□□□□□ -1.49
VIM-210ENST00000637053 NECTIN2Q92692 538 aa5.76□□□□□ -1.49
VIM-210ENST00000637053 PKD2L1Q9P0L9 805 aa5.76□□□□□ -1.49
VIM-210ENST00000637053 GMPR2Q9P2T1 348 aaKnown RBP5.75□□□□□ -1.49
VIM-210ENST00000637053 STK17AQ9UEE5 414 aa5.75□□□□□ -1.49
VIM-210ENST00000637053 DAXXQ9UER7 740 aaPredicted RBP5.75□□□□□ -1.49
VIM-210ENST00000637053 LOC100996750A0A140TA64 210 aa5.74□□□□□ -1.49
VIM-210ENST00000637053 WIPF1O43516 503 aa5.74□□□□□ -1.49
VIM-210ENST00000637053 CRIPAKQ8N1N5 446 aa5.74□□□□□ -1.49
VIM-210ENST00000637053 KRTAP4-6Q9BYQ5 205 aa5.74□□□□□ -1.49
VIM-210ENST00000637053 PRR14Q9BWN1 585 aa5.72□□□□□ -1.49
VIM-210ENST00000637053 C11orf95C9JLR9 678 aaPredicted RBP5.71□□□□□ -1.5
VIM-210ENST00000637053 AVPP01185 164 aa5.71□□□□□ -1.5
VIM-210ENST00000637053 FOXC1Q12948 553 aa5.71□□□□□ -1.5
VIM-210ENST00000637053 RTN4Q9NQC3 1192 aaKnown RBP5.7□□□□□ -1.5
VIM-210ENST00000637053 TOR4AQ9NXH8 423 aa5.7□□□□□ -1.5
VIM-210ENST00000637053 ARIH1Q9Y4X5 557 aaPredicted RBP5.7□□□□□ -1.5
VIM-210ENST00000637053 ACTN4O43707 911 aaKnown RBP5.69□□□□□ -1.5
VIM-210ENST00000637053 ADH1BP00325 375 aa5.69□□□□□ -1.5
VIM-210ENST00000637053 AXIN1O15169 862 aa5.68□□□□□ -1.5
VIM-210ENST00000637053 SLC4A3P48751 1232 aa5.68□□□□□ -1.5
VIM-210ENST00000637053 INSM1Q01101 510 aaPredicted RBP5.68□□□□□ -1.5
VIM-210ENST00000637053 SLC6A16Q9GZN6 736 aa5.68□□□□□ -1.5
VIM-210ENST00000637053 SLC10A3P09131 477 aa5.67□□□□□ -1.5
VIM-210ENST00000637053 E2F4Q16254 413 aa5.67□□□□□ -1.5
VIM-210ENST00000637053 LMOD2Q6P5Q4 547 aa5.67□□□□□ -1.5
VIM-210ENST00000637053 CFHP08603 1231 aa5.66□□□□□ -1.5
VIM-210ENST00000637053 SNRPBP14678 240 aaKnown RBP5.66□□□□□ -1.5
VIM-210ENST00000637053 SMCPP49901 116 aaPredicted RBP5.66□□□□□ -1.5
VIM-210ENST00000637053 TMEM134Q9H6X4 195 aa5.66□□□□□ -1.5
VIM-210ENST00000637053 DCAF8L2P0C7V8 631 aa5.65□□□□□ -1.5
VIM-210ENST00000637053 DNAJB2P25686 324 aa5.65□□□□□ -1.5
VIM-210ENST00000637053 SCUBE3Q8IX30 993 aa5.65□□□□□ -1.5
VIM-210ENST00000637053 TERTO14746 1132 aaKnown RBP5.64□□□□□ -1.51
VIM-210ENST00000637053 NR1I2O75469 434 aa5.64□□□□□ -1.51
VIM-210ENST00000637053 CTC1Q2NKJ3 1217 aa5.64□□□□□ -1.51
VIM-210ENST00000637053 KMT5BQ4FZB7 885 aa5.64□□□□□ -1.51
VIM-210ENST00000637053 AMER1Q5JTC6 1135 aaPredicted RBP5.64□□□□□ -1.51
VIM-210ENST00000637053 RCCD1A6NED2 376 aa5.63□□□□□ -1.51
VIM-210ENST00000637053 LORP23490 312 aaPredicted RBP5.63□□□□□ -1.51
VIM-210ENST00000637053 FAM161AQ3B820 660 aa5.63□□□□□ -1.51
VIM-210ENST00000637053 CYP4X1Q8N118 509 aa5.63□□□□□ -1.51
VIM-210ENST00000637053 ADGRG1Q9Y653 693 aa5.63□□□□□ -1.51
VIM-210ENST00000637053 RPIAP49247 311 aa5.62□□□□□ -1.51
VIM-210ENST00000637053 PUS10Q3MIT2 529 aaKnown RBP5.62□□□□□ -1.51
VIM-210ENST00000637053 SPSB2Q99619 263 aa5.61□□□□□ -1.51
VIM-210ENST00000637053 ATP13A2Q9NQ11 1180 aa5.61□□□□□ -1.51
VIM-210ENST00000637053 FCF1Q9Y324 198 aaKnown RBP5.61□□□□□ -1.51
VIM-210ENST00000637053 SMPD1P17405 629 aa5.6□□□□□ -1.51
VIM-210ENST00000637053 CD2BP2O95400 341 aaKnown RBP5.59□□□□□ -1.51
VIM-210ENST00000637053 PTGDRQ13258 359 aa5.59□□□□□ -1.51
VIM-210ENST00000637053 RBM46Q8TBY0 533 aaKnown RBP5.59□□□□□ -1.51
VIM-210ENST00000637053 TRIM47Q96LD4 638 aa5.59□□□□□ -1.51
VIM-210ENST00000637053 FAM160A2Q8N612 972 aaPredicted RBP5.58□□□□□ -1.52
VIM-210ENST00000637053 TTC24A2A3L6 582 aaPredicted RBP5.57□□□□□ -1.52
VIM-210ENST00000637053 MLLT3P42568 568 aaPredicted RBP5.57□□□□□ -1.52
VIM-210ENST00000637053 THAP11Q96EK4 314 aa5.57□□□□□ -1.52
VIM-210ENST00000637053 J3QL48 77 aa5.56□□□□□ -1.52
VIM-210ENST00000637053 PRDM9Q9NQV7 894 aa5.56□□□□□ -1.52
VIM-210ENST00000637053 GMPRP36959 345 aa5.55□□□□□ -1.52
VIM-210ENST00000637053 WNT7AO00755 349 aa5.54□□□□□ -1.52
VIM-210ENST00000637053 SUZ12Q15022 739 aaKnown RBP5.54□□□□□ -1.52
VIM-210ENST00000637053 MORN1Q5T089 497 aa5.54□□□□□ -1.52
VIM-210ENST00000637053 SNIP1Q8TAD8 396 aaKnown RBP5.54□□□□□ -1.52
VIM-210ENST00000637053 HPS1Q92902 700 aa5.54□□□□□ -1.52
VIM-210ENST00000637053 SENP2Q9HC62 589 aa5.54□□□□□ -1.52
VIM-210ENST00000637053 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.53□□□□□ -1.52
VIM-210ENST00000637053 ZSCAN1Q8NBB4 408 aa5.53□□□□□ -1.52
VIM-210ENST00000637053 WDR70Q9NW82 654 aa5.53□□□□□ -1.52
VIM-210ENST00000637053 PXYLP1Q8TE99 480 aa5.52□□□□□ -1.53
VIM-210ENST00000637053 BBXQ8WY36 941 aaPredicted RBP5.52□□□□□ -1.53
VIM-210ENST00000637053 MRGPRX2Q96LB1 330 aa5.52□□□□□ -1.53
VIM-210ENST00000637053 SLC27A5Q9Y2P5 690 aa5.52□□□□□ -1.53
VIM-210ENST00000637053 FAM181BA6NEQ2 426 aa5.51□□□□□ -1.53
VIM-210ENST00000637053 FUT2Q10981 343 aa5.51□□□□□ -1.53
VIM-210ENST00000637053 VEGFBP49765 207 aa5.5□□□□□ -1.53
VIM-210ENST00000637053 TRIM32Q13049 653 aa5.5□□□□□ -1.53
VIM-210ENST00000637053 BRICD5Q6PL45 260 aa5.5□□□□□ -1.53
VIM-210ENST00000637053 KIFC2Q96AC6 838 aa5.5□□□□□ -1.53
VIM-210ENST00000637053 NXF1Q9UBU9 619 aaKnown RBP5.5□□□□□ -1.53
VIM-210ENST00000637053 ERBB4Q15303 1308 aa5.49□□□□□ -1.53
VIM-210ENST00000637053 TTBK1Q5TCY1 1321 aaPredicted RBP5.49□□□□□ -1.53
VIM-210ENST00000637053 FMNL1O95466 1100 aaPredicted RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms