RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 CLCN1P35523 988 aa8.12□□□□□ -1.11
CKS1BP3-201ENST00000600888 ANKK1Q8NFD2 765 aa8.12□□□□□ -1.11
CKS1BP3-201ENST00000600888 TMUB1Q9BVT8 246 aa8.12□□□□□ -1.11
CKS1BP3-201ENST00000600888 KCTD12Q96CX2 325 aaKnown RBP8.11□□□□□ -1.11
CKS1BP3-201ENST00000600888 LRCH3Q96II8 777 aa8.11□□□□□ -1.11
CKS1BP3-201ENST00000600888 REPIN1Q9BWE0 567 aaKnown RBP8.11□□□□□ -1.11
CKS1BP3-201ENST00000600888 GPCPD1Q9NPB8 672 aa8.11□□□□□ -1.11
CKS1BP3-201ENST00000600888 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.11□□□□□ -1.11
CKS1BP3-201ENST00000600888 SOWAHBA6NEL2 793 aa8.1□□□□□ -1.11
CKS1BP3-201ENST00000600888 TTLL12Q14166 644 aaPredicted RBP8.1□□□□□ -1.11
CKS1BP3-201ENST00000600888 BCAMP50895 628 aa8.09□□□□□ -1.11
CKS1BP3-201ENST00000600888 SLF2Q8IX21 1173 aa8.09□□□□□ -1.11
CKS1BP3-201ENST00000600888 PARP9Q8IXQ6 854 aa8.09□□□□□ -1.11
CKS1BP3-201ENST00000600888 THSD4Q6ZMP0 1018 aa8.08□□□□□ -1.12
CKS1BP3-201ENST00000600888 DDX11L8A8MPP1 907 aa8.07□□□□□ -1.12
CKS1BP3-201ENST00000600888 SLC4A3P48751 1232 aa8.07□□□□□ -1.12
CKS1BP3-201ENST00000600888 MMRN1Q13201 1228 aa8.07□□□□□ -1.12
CKS1BP3-201ENST00000600888 GIGYF2Q6Y7W6 1299 aaKnown RBP8.07□□□□□ -1.12
CKS1BP3-201ENST00000600888 SULF1Q8IWU6 871 aa8.07□□□□□ -1.12
CKS1BP3-201ENST00000600888 RNF166Q96A37 237 aaPredicted RBP8.07□□□□□ -1.12
CKS1BP3-201ENST00000600888 FAM217BQ9NTX9 383 aaPredicted RBP8.07□□□□□ -1.12
CKS1BP3-201ENST00000600888 RNF40O75150 1001 aa8.06□□□□□ -1.12
CKS1BP3-201ENST00000600888 SSTR3P32745 418 aaPredicted RBP8.06□□□□□ -1.12
CKS1BP3-201ENST00000600888 PPP4CP60510 307 aa8.06□□□□□ -1.12
CKS1BP3-201ENST00000600888 GPBP1L1Q9HC44 474 aaPredicted RBP8.06□□□□□ -1.12
CKS1BP3-201ENST00000600888 TSR3Q9UJK0 312 aaKnown RBP8.06□□□□□ -1.12
CKS1BP3-201ENST00000600888 HPS5Q9UPZ3 1129 aa8.06□□□□□ -1.12
CKS1BP3-201ENST00000600888 SLC10A3P09131 477 aa8.05□□□□□ -1.12
CKS1BP3-201ENST00000600888 BRPF1P55201 1214 aaPredicted RBP8.05□□□□□ -1.12
CKS1BP3-201ENST00000600888 NEUROD2Q15784 382 aa8.05□□□□□ -1.12
CKS1BP3-201ENST00000600888 RSPH4AQ5TD94 716 aa8.05□□□□□ -1.12
CKS1BP3-201ENST00000600888 PTPN5P54829 565 aa8.04□□□□□ -1.12
CKS1BP3-201ENST00000600888 KDM4CQ9H3R0 1056 aa8.04□□□□□ -1.12
CKS1BP3-201ENST00000600888 WBP1LQ9NX94 342 aa8.04□□□□□ -1.12
CKS1BP3-201ENST00000600888 MS4A1P11836 297 aa8.03□□□□□ -1.12
CKS1BP3-201ENST00000600888 CD46P15529 392 aa8.03□□□□□ -1.12
CKS1BP3-201ENST00000600888 RDH13Q8NBN7 331 aa8.03□□□□□ -1.12
CKS1BP3-201ENST00000600888 NECTIN2Q92692 538 aa8.03□□□□□ -1.12
CKS1BP3-201ENST00000600888 GCGRP47871 477 aa8.01□□□□□ -1.13
CKS1BP3-201ENST00000600888 BEGAINQ9BUH8 593 aa8□□□□□ -1.13
CKS1BP3-201ENST00000600888 HCSTQ9UBK5 93 aa8□□□□□ -1.13
CKS1BP3-201ENST00000600888 CFHP08603 1231 aa7.99□□□□□ -1.13
CKS1BP3-201ENST00000600888 APLP1P51693 650 aa7.99□□□□□ -1.13
CKS1BP3-201ENST00000600888 NYAP1Q6ZVC0 841 aa7.99□□□□□ -1.13
CKS1BP3-201ENST00000600888 KMT5BQ4FZB7 885 aa7.98□□□□□ -1.13
CKS1BP3-201ENST00000600888 FAM117AQ9C073 453 aa7.98□□□□□ -1.13
CKS1BP3-201ENST00000600888 PRR14Q9BWN1 585 aa7.97□□□□□ -1.13
CKS1BP3-201ENST00000600888 ACTN4O43707 911 aaKnown RBP7.96□□□□□ -1.14
CKS1BP3-201ENST00000600888 KDM4AO75164 1064 aa7.96□□□□□ -1.14
CKS1BP3-201ENST00000600888 NUTM1Q86Y26 1132 aa7.95□□□□□ -1.14
CKS1BP3-201ENST00000600888 IL27Q8NEV9 243 aa7.95□□□□□ -1.14
CKS1BP3-201ENST00000600888 DDRGK1Q96HY6 314 aa7.95□□□□□ -1.14
CKS1BP3-201ENST00000600888 FUT2Q10981 343 aa7.94□□□□□ -1.14
CKS1BP3-201ENST00000600888 SPIRE2Q8WWL2 714 aa7.94□□□□□ -1.14
CKS1BP3-201ENST00000600888 PLEKHG3A1L390 1219 aa7.93□□□□□ -1.14
CKS1BP3-201ENST00000600888 USP46P62068 366 aa7.93□□□□□ -1.14
CKS1BP3-201ENST00000600888 DIXDC1Q155Q3 683 aa7.93□□□□□ -1.14
CKS1BP3-201ENST00000600888 TBC1D2Q9BYX2 928 aa7.93□□□□□ -1.14
CKS1BP3-201ENST00000600888 PLSCR2Q9NRY7 297 aa7.93□□□□□ -1.14
CKS1BP3-201ENST00000600888 ATP6V1AP38606 617 aa7.92□□□□□ -1.14
CKS1BP3-201ENST00000600888 GRIPAP1Q4V328 841 aa7.92□□□□□ -1.14
CKS1BP3-201ENST00000600888 PCDHB3Q9Y5E6 796 aa7.92□□□□□ -1.14
CKS1BP3-201ENST00000600888 PUS10Q3MIT2 529 aaKnown RBP7.91□□□□□ -1.14
CKS1BP3-201ENST00000600888 HOXA2O43364 376 aa7.9□□□□□ -1.14
CKS1BP3-201ENST00000600888 MORN1Q5T089 497 aa7.9□□□□□ -1.14
CKS1BP3-201ENST00000600888 RSPH6AQ9H0K4 717 aa7.9□□□□□ -1.14
CKS1BP3-201ENST00000600888 MOXD2PA6NHM9 499 aa7.89□□□□□ -1.15
CKS1BP3-201ENST00000600888 TJAP1Q5JTD0 557 aa7.89□□□□□ -1.15
CKS1BP3-201ENST00000600888 MYSM1Q5VVJ2 828 aa7.89□□□□□ -1.15
CKS1BP3-201ENST00000600888 BLOC1S3Q6QNY0 202 aa7.89□□□□□ -1.15
CKS1BP3-201ENST00000600888 MTRQ99707 1265 aa7.89□□□□□ -1.15
CKS1BP3-201ENST00000600888 NDUFV2P19404 249 aa7.88□□□□□ -1.15
CKS1BP3-201ENST00000600888 COPS2P61201 443 aa7.88□□□□□ -1.15
CKS1BP3-201ENST00000600888 SCUBE3Q8IX30 993 aa7.88□□□□□ -1.15
CKS1BP3-201ENST00000600888 HLA-CQ95604 372 aa7.88□□□□□ -1.15
CKS1BP3-201ENST00000600888 NR1I2O75469 434 aa7.87□□□□□ -1.15
CKS1BP3-201ENST00000600888 RIC3Q7Z5B4 369 aa7.87□□□□□ -1.15
CKS1BP3-201ENST00000600888 IL21Q9HBE4 155 aa7.87□□□□□ -1.15
CKS1BP3-201ENST00000600888 SLC27A5Q9Y2P5 690 aa7.87□□□□□ -1.15
CKS1BP3-201ENST00000600888 SPTLC1O15269 473 aa7.86□□□□□ -1.15
CKS1BP3-201ENST00000600888 FDX1P10109 184 aa7.86□□□□□ -1.15
CKS1BP3-201ENST00000600888 GJA5P36382 358 aa7.86□□□□□ -1.15
CKS1BP3-201ENST00000600888 GUCA2AQ02747 115 aa7.86□□□□□ -1.15
CKS1BP3-201ENST00000600888 SKIV2LQ15477 1246 aaKnown RBP7.86□□□□□ -1.15
CKS1BP3-201ENST00000600888 SH3D19Q5HYK7 790 aa7.86□□□□□ -1.15
CKS1BP3-201ENST00000600888 RSBN1LQ6PCB5 846 aaPredicted RBP7.86□□□□□ -1.15
CKS1BP3-201ENST00000600888 POLR3EQ9NVU0 708 aa7.86□□□□□ -1.15
CKS1BP3-201ENST00000600888 ZPR1O75312 459 aa7.85□□□□□ -1.15
CKS1BP3-201ENST00000600888 ITGBL1O95965 494 aaPredicted RBP7.85□□□□□ -1.15
CKS1BP3-201ENST00000600888 ZNF516Q92618 1163 aa7.85□□□□□ -1.15
CKS1BP3-201ENST00000600888 GOPCQ9HD26 462 aa7.85□□□□□ -1.15
CKS1BP3-201ENST00000600888 PCDHGC3Q9UN70 934 aa7.85□□□□□ -1.15
CKS1BP3-201ENST00000600888 KCNC4Q03721 635 aa7.84□□□□□ -1.15
CKS1BP3-201ENST00000600888 LIMD1Q9UGP4 676 aa7.84□□□□□ -1.15
CKS1BP3-201ENST00000600888 CLK2P49760 499 aaKnown RBP7.83□□□□□ -1.16
CKS1BP3-201ENST00000600888 BRICD5Q6PL45 260 aa7.83□□□□□ -1.16
CKS1BP3-201ENST00000600888 PROCA1Q8NCQ7 364 aaPredicted RBP7.83□□□□□ -1.16
CKS1BP3-201ENST00000600888 SALL2Q9Y467 1007 aaPredicted RBP7.83□□□□□ -1.16
CKS1BP3-201ENST00000600888 PCDHB15Q9Y5E8 787 aa7.83□□□□□ -1.16
CKS1BP3-201ENST00000600888 TUSC1Q2TAM9 212 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms