RNA–Protein interactions for RNA: ENST00000578692.1

CRLF3-203, Transcript of cytokine receptor like factor 3, humanhuman

TSL 2

Gene CRLF3, Length 1,392 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-203ENST00000578692 MYO5BQ9ULV0 1848 aa24.1■■□□□ 1.45
CRLF3-203ENST00000578692 TMEM131LA2VDJ0 1609 aa24.1■■□□□ 1.45
CRLF3-203ENST00000578692 ALKQ9UM73 1620 aa24.09■■□□□ 1.45
CRLF3-203ENST00000578692 PPP1R15AO75807 674 aaPredicted RBP24.08■■□□□ 1.45
CRLF3-203ENST00000578692 ZFYVE9O95405 1425 aa24.08■■□□□ 1.44
CRLF3-203ENST00000578692 RIMS2Q9UQ26 1411 aa24.08■■□□□ 1.44
CRLF3-203ENST00000578692 SENP3Q9H4L4 574 aaPredicted RBP24.07■■□□□ 1.44
CRLF3-203ENST00000578692 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.06■■□□□ 1.44
CRLF3-203ENST00000578692 PLEKHG1Q9ULL1 1385 aa24.04■■□□□ 1.44
CRLF3-203ENST00000578692 PROSER2Q86WR7 435 aaPredicted RBP24.03■■□□□ 1.44
CRLF3-203ENST00000578692 XIRP1Q702N8 1843 aaKnown RBP24.03■■□□□ 1.44
CRLF3-203ENST00000578692 ILDR2Q71H61 639 aa24.03■■□□□ 1.44
CRLF3-203ENST00000578692 NAIPQ13075 1403 aa24.02■■□□□ 1.44
CRLF3-203ENST00000578692 NUTM2DQ5VT03 806 aaPredicted RBP24.01■■□□□ 1.43
CRLF3-203ENST00000578692 TMEM94Q12767 1356 aa24.01■■□□□ 1.43
CRLF3-203ENST00000578692 TBX22Q9Y458 520 aa24■■□□□ 1.43
CRLF3-203ENST00000578692 RBM33Q96EV2 1170 aaKnown RBP23.99■■□□□ 1.43
CRLF3-203ENST00000578692 SPHKAPQ2M3C7 1700 aa23.95■■□□□ 1.43
CRLF3-203ENST00000578692 TRIM52Q96A61 297 aa23.95■■□□□ 1.42
CRLF3-203ENST00000578692 NKTRP30414 1462 aaKnown RBP23.95■■□□□ 1.42
CRLF3-203ENST00000578692 NWD1Q149M9 1564 aa23.95■■□□□ 1.42
CRLF3-203ENST00000578692 CHD2O14647 1828 aaKnown RBP23.94■■□□□ 1.42
CRLF3-203ENST00000578692 HFM1A2PYH4 1435 aa23.93■■□□□ 1.42
CRLF3-203ENST00000578692 ZNF326Q5BKZ1 582 aaKnown RBP23.91■■□□□ 1.42
CRLF3-203ENST00000578692 ADAMTS13Q76LX8 1427 aa23.91■■□□□ 1.42
CRLF3-203ENST00000578692 FAM135BQ49AJ0 1406 aa23.89■■□□□ 1.42
CRLF3-203ENST00000578692 MSH6P52701 1360 aa23.88■■□□□ 1.41
CRLF3-203ENST00000578692 PIK3R4Q99570 1358 aa23.87■■□□□ 1.41
CRLF3-203ENST00000578692 DIP2AQ14689 1571 aa23.86■■□□□ 1.41
CRLF3-203ENST00000578692 SLC4A1APQ9BWU0 796 aaKnown RBP23.86■■□□□ 1.41
CRLF3-203ENST00000578692 MED1Q15648 1581 aaPredicted RBP23.86■■□□□ 1.41
CRLF3-203ENST00000578692 SOCS7O14512 581 aa23.84■■□□□ 1.41
CRLF3-203ENST00000578692 TRPM2O94759 1503 aa23.84■■□□□ 1.41
CRLF3-203ENST00000578692 CLTCL1P53675 1640 aa23.83■■□□□ 1.41
CRLF3-203ENST00000578692 SLAIN2Q9P270 581 aa23.83■■□□□ 1.41
CRLF3-203ENST00000578692 AMOTL2Q9Y2J4 779 aa23.83■■□□□ 1.41
CRLF3-203ENST00000578692 NCOA3Q9Y6Q9 1424 aa23.83■■□□□ 1.41
CRLF3-203ENST00000578692 C14orf37Q86TY3 774 aa23.81■■□□□ 1.4
CRLF3-203ENST00000578692 KIF1BO60333 1816 aa23.8■■□□□ 1.4
CRLF3-203ENST00000578692 ROBO1Q9Y6N7 1651 aa23.79■■□□□ 1.4
CRLF3-203ENST00000578692 PTPRUQ92729 1446 aa23.79■■□□□ 1.4
CRLF3-203ENST00000578692 PHF23Q9BUL5 403 aaPredicted RBP23.78■■□□□ 1.4
CRLF3-203ENST00000578692 C19orf44Q9H6X5 657 aa23.78■■□□□ 1.4
CRLF3-203ENST00000578692 SETBP1Q9Y6X0 1596 aa23.77■■□□□ 1.4
CRLF3-203ENST00000578692 NRXN3Q9Y4C0 1643 aa23.77■■□□□ 1.4
CRLF3-203ENST00000578692 NEXMIFQ5QGS0 1516 aa23.76■■□□□ 1.39
CRLF3-203ENST00000578692 CADPS2Q86UW7 1296 aa23.75■■□□□ 1.39
CRLF3-203ENST00000578692 VGFO15240 615 aaPredicted RBP23.74■■□□□ 1.39
CRLF3-203ENST00000578692 ATF3P18847 181 aa23.74■■□□□ 1.39
CRLF3-203ENST00000578692 METP08581 1390 aa23.73■■□□□ 1.39
CRLF3-203ENST00000578692 FOXD1Q16676 465 aa23.73■■□□□ 1.39
CRLF3-203ENST00000578692 RPGRIP1LQ68CZ1 1315 aa23.72■■□□□ 1.39
CRLF3-203ENST00000578692 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.71■■□□□ 1.39
CRLF3-203ENST00000578692 MPHOSPH9Q99550 1183 aa23.71■■□□□ 1.39
CRLF3-203ENST00000578692 XRN1Q8IZH2 1706 aaKnown RBP23.68■■□□□ 1.38
CRLF3-203ENST00000578692 ACIN1Q9UKV3 1341 aaKnown RBP23.65■■□□□ 1.38
CRLF3-203ENST00000578692 PHLPP1O60346 1717 aa23.65■■□□□ 1.38
CRLF3-203ENST00000578692 CCDC144AA2RUR9 1427 aa23.63■■□□□ 1.37
CRLF3-203ENST00000578692 DCCP43146 1447 aa23.62■■□□□ 1.37
CRLF3-203ENST00000578692 SETD5Q9C0A6 1442 aa23.62■■□□□ 1.37
CRLF3-203ENST00000578692 RGL3Q3MIN7 710 aa23.61■■□□□ 1.37
CRLF3-203ENST00000578692 RGS17Q9UGC6 210 aaPredicted RBP23.61■■□□□ 1.37
CRLF3-203ENST00000578692 PPLO60437 1756 aa23.61■■□□□ 1.37
CRLF3-203ENST00000578692 JCADQ9P266 1359 aa23.6■■□□□ 1.37
CRLF3-203ENST00000578692 BRINP3Q76B58 766 aa23.59■■□□□ 1.37
CRLF3-203ENST00000578692 COL16A1Q07092 1604 aaPredicted RBP23.57■■□□□ 1.36
CRLF3-203ENST00000578692 SETD1AO15047 1707 aaKnown RBP23.56■■□□□ 1.36
CRLF3-203ENST00000578692 ADGRL3Q9HAR2 1447 aa23.55■■□□□ 1.36
CRLF3-203ENST00000578692 ADGRF5Q8IZF2 1346 aa23.55■■□□□ 1.36
CRLF3-203ENST00000578692 MST1RQ04912 1400 aa23.55■■□□□ 1.36
CRLF3-203ENST00000578692 SPATA31E1Q6ZUB1 1445 aa23.55■■□□□ 1.36
CRLF3-203ENST00000578692 AHDC1Q5TGY3 1603 aaPredicted RBP23.54■■□□□ 1.36
CRLF3-203ENST00000578692 ANKRD30BQ9BXX2 1392 aa23.53■■□□□ 1.36
CRLF3-203ENST00000578692 ROBO2Q9HCK4 1378 aa23.53■■□□□ 1.36
CRLF3-203ENST00000578692 PTCH1Q13635 1447 aa23.52■■□□□ 1.36
CRLF3-203ENST00000578692 RAB3GAP2Q9H2M9 1393 aa23.52■■□□□ 1.36
CRLF3-203ENST00000578692 NALCNQ8IZF0 1738 aa23.51■■□□□ 1.35
CRLF3-203ENST00000578692 SPATA31A6Q5VVP1 1343 aa23.5■■□□□ 1.35
CRLF3-203ENST00000578692 ASXL1Q8IXJ9 1541 aa23.49■■□□□ 1.35
CRLF3-203ENST00000578692 PRAG1Q86YV5 1406 aa23.49■■□□□ 1.35
CRLF3-203ENST00000578692 POTEAQ6S8J7 498 aa23.48■■□□□ 1.35
CRLF3-203ENST00000578692 IFT172Q9UG01 1749 aa23.47■■□□□ 1.35
CRLF3-203ENST00000578692 LRRC59Q96AG4 307 aaKnown RBP23.45■■□□□ 1.34
CRLF3-203ENST00000578692 C1orf167Q5SNV9 1468 aa23.45■■□□□ 1.34
CRLF3-203ENST00000578692 DDX17Q92841 729 aaKnown RBP23.44■■□□□ 1.34
CRLF3-203ENST00000578692 STK26Q9P289 416 aa23.44■■□□□ 1.34
CRLF3-203ENST00000578692 SHPRHQ149N8 1683 aa23.44■■□□□ 1.34
CRLF3-203ENST00000578692 MEX3CQ5U5Q3 659 aaKnown RBP23.43■■□□□ 1.34
CRLF3-203ENST00000578692 TMEM132EQ6IEE7 984 aa23.43■■□□□ 1.34
CRLF3-203ENST00000578692 NHSL1Q5SYE7 1610 aa23.43■■□□□ 1.34
CRLF3-203ENST00000578692 ORAI2Q96SN7 254 aa23.41■■□□□ 1.34
CRLF3-203ENST00000578692 PIK3C2GO75747 1445 aa23.41■■□□□ 1.34
CRLF3-203ENST00000578692 LRP6O75581 1613 aa23.41■■□□□ 1.34
CRLF3-203ENST00000578692 LRPPRCP42704 1394 aaKnown RBP23.4■■□□□ 1.34
CRLF3-203ENST00000578692 NUTM2BA6NNL0 878 aaPredicted RBP23.4■■□□□ 1.34
CRLF3-203ENST00000578692 NUTM2EB1AL46 878 aaPredicted RBP23.4■■□□□ 1.34
CRLF3-203ENST00000578692 HRCP23327 699 aa23.4■■□□□ 1.34
CRLF3-203ENST00000578692 NUTM2AQ8IVF1 878 aaPredicted RBP23.4■■□□□ 1.34
CRLF3-203ENST00000578692 WAPLQ7Z5K2 1190 aa23.4■■□□□ 1.34
CRLF3-203ENST00000578692 ABCC11Q96J66 1382 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms