RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TMEM131LA2VDJ0 1609 aa32.52■■■□□ 2.8
VPS53-216ENST00000574029 PHF23Q9BUL5 403 aaPredicted RBP32.52■■■□□ 2.8
VPS53-216ENST00000574029 FAM135BQ49AJ0 1406 aa32.51■■■□□ 2.8
VPS53-216ENST00000574029 NKTRP30414 1462 aaKnown RBP32.51■■■□□ 2.79
VPS53-216ENST00000574029 ROCK1Q13464 1354 aa32.51■■■□□ 2.79
VPS53-216ENST00000574029 PROSER2Q86WR7 435 aaPredicted RBP32.49■■■□□ 2.79
VPS53-216ENST00000574029 E9PCH4 1651 aa32.49■■■□□ 2.79
VPS53-216ENST00000574029 PLEKHG1Q9ULL1 1385 aa32.47■■■□□ 2.79
VPS53-216ENST00000574029 RIMS2Q9UQ26 1411 aa32.46■■■□□ 2.79
VPS53-216ENST00000574029 BCANQ96GW7 911 aa32.46■■■□□ 2.79
VPS53-216ENST00000574029 IQGAP3Q86VI3 1631 aa32.46■■■□□ 2.79
VPS53-216ENST00000574029 HDGFP51858 240 aaKnown RBP32.44■■■□□ 2.78
VPS53-216ENST00000574029 CHD2O14647 1828 aaKnown RBP32.44■■■□□ 2.78
VPS53-216ENST00000574029 RBM33Q96EV2 1170 aaKnown RBP32.43■■■□□ 2.78
VPS53-216ENST00000574029 ROBO1Q9Y6N7 1651 aa32.42■■■□□ 2.78
VPS53-216ENST00000574029 PPP1R15AO75807 674 aaPredicted RBP32.39■■■□□ 2.78
VPS53-216ENST00000574029 MSH6P52701 1360 aa32.36■■■□□ 2.77
VPS53-216ENST00000574029 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.36■■■□□ 2.77
VPS53-216ENST00000574029 TBX22Q9Y458 520 aa32.36■■■□□ 2.77
VPS53-216ENST00000574029 CHGAP10645 457 aaKnown RBP32.34■■■□□ 2.77
VPS53-216ENST00000574029 NUP155O75694 1391 aa32.33■■■□□ 2.77
VPS53-216ENST00000574029 RGS17Q9UGC6 210 aaPredicted RBP32.32■■■□□ 2.76
VPS53-216ENST00000574029 ADAMTS13Q76LX8 1427 aa32.31■■■□□ 2.76
VPS53-216ENST00000574029 DIP2AQ14689 1571 aa32.3■■■□□ 2.76
VPS53-216ENST00000574029 ITGAEP38570 1179 aa32.29■■■□□ 2.76
VPS53-216ENST00000574029 SLAIN2Q9P270 581 aa32.28■■■□□ 2.76
VPS53-216ENST00000574029 NCOA3Q9Y6Q9 1424 aa32.27■■■□□ 2.76
VPS53-216ENST00000574029 NUTM2DQ5VT03 806 aaPredicted RBP32.26■■■□□ 2.75
VPS53-216ENST00000574029 PIK3R4Q99570 1358 aa32.25■■■□□ 2.75
VPS53-216ENST00000574029 PPARGC1BQ86YN6 1023 aaKnown RBP32.23■■■□□ 2.75
VPS53-216ENST00000574029 PHLPP1O60346 1717 aa32.23■■■□□ 2.75
VPS53-216ENST00000574029 SPHKAPQ2M3C7 1700 aa32.21■■■□□ 2.75
VPS53-216ENST00000574029 TRPM2O94759 1503 aa32.2■■■□□ 2.74
VPS53-216ENST00000574029 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.17■■■□□ 2.74
VPS53-216ENST00000574029 COL16A1Q07092 1604 aaPredicted RBP32.14■■■□□ 2.74
VPS53-216ENST00000574029 C14orf37Q86TY3 774 aa32.13■■■□□ 2.73
VPS53-216ENST00000574029 PTPRUQ92729 1446 aa32.13■■■□□ 2.73
VPS53-216ENST00000574029 C19orf44Q9H6X5 657 aa32.13■■■□□ 2.73
VPS53-216ENST00000574029 NRXN3Q9Y4C0 1643 aa32.13■■■□□ 2.73
VPS53-216ENST00000574029 JCADQ9P266 1359 aa32.12■■■□□ 2.73
VPS53-216ENST00000574029 SETBP1Q9Y6X0 1596 aa32.11■■■□□ 2.73
VPS53-216ENST00000574029 CADPS2Q86UW7 1296 aa32.11■■■□□ 2.73
VPS53-216ENST00000574029 AMOTL2Q9Y2J4 779 aa32.11■■■□□ 2.73
VPS53-216ENST00000574029 POTEAQ6S8J7 498 aa32.1■■■□□ 2.73
VPS53-216ENST00000574029 RRBP1Q9P2E9 1410 aaKnown RBP32.09■■■□□ 2.73
VPS53-216ENST00000574029 XRN1Q8IZH2 1706 aaKnown RBP32.08■■■□□ 2.73
VPS53-216ENST00000574029 ATF3P18847 181 aa32.07■■■□□ 2.72
VPS53-216ENST00000574029 AHDC1Q5TGY3 1603 aaPredicted RBP32.06■■■□□ 2.72
VPS53-216ENST00000574029 CLTCL1P53675 1640 aa32.04■■■□□ 2.72
VPS53-216ENST00000574029 ZNF326Q5BKZ1 582 aaKnown RBP32.03■■■□□ 2.72
VPS53-216ENST00000574029 NAIPQ13075 1403 aa32.02■■■□□ 2.72
VPS53-216ENST00000574029 DCCP43146 1447 aa32■■■□□ 2.71
VPS53-216ENST00000574029 NEXMIFQ5QGS0 1516 aa32■■■□□ 2.71
VPS53-216ENST00000574029 METP08581 1390 aa31.98■■■□□ 2.71
VPS53-216ENST00000574029 SHPRHQ149N8 1683 aa31.98■■■□□ 2.71
VPS53-216ENST00000574029 KIF1BO60333 1816 aa31.98■■■□□ 2.71
VPS53-216ENST00000574029 SPATA31A6Q5VVP1 1343 aa31.98■■■□□ 2.71
VPS53-216ENST00000574029 LRP6O75581 1613 aa31.96■■■□□ 2.71
VPS53-216ENST00000574029 BRINP3Q76B58 766 aa31.95■■■□□ 2.71
VPS53-216ENST00000574029 MST1RQ04912 1400 aa31.91■■■□□ 2.7
VPS53-216ENST00000574029 ASXL1Q8IXJ9 1541 aa31.9■■■□□ 2.7
VPS53-216ENST00000574029 HFM1A2PYH4 1435 aa31.89■■■□□ 2.7
VPS53-216ENST00000574029 NHSL1Q5SYE7 1610 aa31.87■■■□□ 2.69
VPS53-216ENST00000574029 ADGRL3Q9HAR2 1447 aa31.86■■■□□ 2.69
VPS53-216ENST00000574029 NALCNQ8IZF0 1738 aa31.86■■■□□ 2.69
VPS53-216ENST00000574029 SETD1AO15047 1707 aaKnown RBP31.85■■■□□ 2.69
VPS53-216ENST00000574029 MEX3CQ5U5Q3 659 aaKnown RBP31.84■■■□□ 2.69
VPS53-216ENST00000574029 TRIM52Q96A61 297 aa31.83■■■□□ 2.69
VPS53-216ENST00000574029 SETD5Q9C0A6 1442 aa31.83■■■□□ 2.69
VPS53-216ENST00000574029 VGFO15240 615 aaPredicted RBP31.8■■■□□ 2.68
VPS53-216ENST00000574029 ZNF772Q68DY9 489 aaPredicted RBP31.8■■■□□ 2.68
VPS53-216ENST00000574029 SLC4A1APQ9BWU0 796 aaKnown RBP31.78■■■□□ 2.68
VPS53-216ENST00000574029 RPGRIP1LQ68CZ1 1315 aa31.77■■■□□ 2.68
VPS53-216ENST00000574029 PTCH1Q13635 1447 aa31.77■■■□□ 2.68
VPS53-216ENST00000574029 PPLO60437 1756 aa31.76■■■□□ 2.68
VPS53-216ENST00000574029 PRAG1Q86YV5 1406 aa31.75■■■□□ 2.67
VPS53-216ENST00000574029 NUTM2BA6NNL0 878 aaPredicted RBP31.73■■■□□ 2.67
VPS53-216ENST00000574029 NUTM2EB1AL46 878 aaPredicted RBP31.73■■■□□ 2.67
VPS53-216ENST00000574029 NUTM2AQ8IVF1 878 aaPredicted RBP31.73■■■□□ 2.67
VPS53-216ENST00000574029 LRRC59Q96AG4 307 aaKnown RBP31.73■■■□□ 2.67
VPS53-216ENST00000574029 ROBO2Q9HCK4 1378 aa31.71■■■□□ 2.67
VPS53-216ENST00000574029 C1orf167Q5SNV9 1468 aa31.71■■■□□ 2.67
VPS53-216ENST00000574029 LAMC1P11047 1609 aa31.69■■■□□ 2.66
VPS53-216ENST00000574029 DDX17Q92841 729 aaKnown RBP31.69■■■□□ 2.66
VPS53-216ENST00000574029 PNPLA6Q8IY17 1366 aa31.67■■■□□ 2.66
VPS53-216ENST00000574029 RXRBP28702 533 aa31.63■■■□□ 2.65
VPS53-216ENST00000574029 AFF2P51816 1311 aa31.63■■■□□ 2.65
VPS53-216ENST00000574029 FOXD1Q16676 465 aa31.62■■■□□ 2.65
VPS53-216ENST00000574029 CDK12Q9NYV4 1490 aaPredicted RBP31.6■■■□□ 2.65
VPS53-216ENST00000574029 ORAI2Q96SN7 254 aa31.59■■■□□ 2.65
VPS53-216ENST00000574029 SOS2Q07890 1332 aaPredicted RBP31.58■■■□□ 2.65
VPS53-216ENST00000574029 CCDC144AA2RUR9 1427 aa31.58■■■□□ 2.65
VPS53-216ENST00000574029 IFT172Q9UG01 1749 aa31.57■■■□□ 2.64
VPS53-216ENST00000574029 SPATA31E1Q6ZUB1 1445 aa31.56■■■□□ 2.64
VPS53-216ENST00000574029 ADGRF5Q8IZF2 1346 aa31.55■■■□□ 2.64
VPS53-216ENST00000574029 UPF1Q92900 1129 aaKnown RBP eCLIP31.55■■■□□ 2.645e-10■■■■■ 50.5
VPS53-216ENST00000574029 C8orf37Q96NL8 207 aa31.54■■■□□ 2.64
VPS53-216ENST00000574029 CDC42BPGQ6DT37 1551 aa31.54■■■□□ 2.64
VPS53-216ENST00000574029 MPHOSPH9Q99550 1183 aa31.53■■■□□ 2.64
VPS53-216ENST00000574029 ANKRD30BQ9BXX2 1392 aa31.5■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms