RNA–Protein interactions for RNA: ENST00000569653.1

GTF3C1-211, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 2

Gene GTF3C1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-211ENST00000569653 SLC26A8Q96RN1 970 aa21.3■■□□□ 1
GTF3C1-211ENST00000569653 MED1Q15648 1581 aaPredicted RBP21.3■■□□□ 1
GTF3C1-211ENST00000569653 SENP3Q9H4L4 574 aaPredicted RBP21.28■■□□□ 1
GTF3C1-211ENST00000569653 RRBP1Q9P2E9 1410 aaKnown RBP21.28■■□□□ 1
GTF3C1-211ENST00000569653 RIMS2Q9UQ26 1411 aa21.27■■□□□ 1
GTF3C1-211ENST00000569653 CHD2O14647 1828 aaKnown RBP21.26■□□□□ 0.99
GTF3C1-211ENST00000569653 NUP155O75694 1391 aa21.25■□□□□ 0.99
GTF3C1-211ENST00000569653 TMEM94Q12767 1356 aa21.24■□□□□ 0.99
GTF3C1-211ENST00000569653 KCNA6P17658 529 aa21.24■□□□□ 0.99
GTF3C1-211ENST00000569653 RBM33Q96EV2 1170 aaKnown RBP21.24■□□□□ 0.99
GTF3C1-211ENST00000569653 SPHKAPQ2M3C7 1700 aa21.24■□□□□ 0.99
GTF3C1-211ENST00000569653 PLEKHG1Q9ULL1 1385 aa21.23■□□□□ 0.99
GTF3C1-211ENST00000569653 NKTRP30414 1462 aaKnown RBP21.21■□□□□ 0.99
GTF3C1-211ENST00000569653 ADAMTS13Q76LX8 1427 aa21.21■□□□□ 0.99
GTF3C1-211ENST00000569653 NUTM2DQ5VT03 806 aaPredicted RBP21.19■□□□□ 0.98
GTF3C1-211ENST00000569653 NAIPQ13075 1403 aa21.19■□□□□ 0.98
GTF3C1-211ENST00000569653 NRXN3Q9Y4C0 1643 aa21.18■□□□□ 0.98
GTF3C1-211ENST00000569653 SOCS7O14512 581 aa21.17■□□□□ 0.98
GTF3C1-211ENST00000569653 CHGAP10645 457 aaKnown RBP21.17■□□□□ 0.98
GTF3C1-211ENST00000569653 ROBO1Q9Y6N7 1651 aa21.16■□□□□ 0.98
GTF3C1-211ENST00000569653 CLTCL1P53675 1640 aa21.16■□□□□ 0.98
GTF3C1-211ENST00000569653 PROSER2Q86WR7 435 aaPredicted RBP21.15■□□□□ 0.98
GTF3C1-211ENST00000569653 BCANQ96GW7 911 aa21.13■□□□□ 0.97
GTF3C1-211ENST00000569653 FAM135BQ49AJ0 1406 aa21.12■□□□□ 0.97
GTF3C1-211ENST00000569653 DIP2AQ14689 1571 aa21.12■□□□□ 0.97
GTF3C1-211ENST00000569653 PPP1R15AO75807 674 aaPredicted RBP21.12■□□□□ 0.97
GTF3C1-211ENST00000569653 TBX22Q9Y458 520 aa21.11■□□□□ 0.97
GTF3C1-211ENST00000569653 PTPRUQ92729 1446 aa21.11■□□□□ 0.97
GTF3C1-211ENST00000569653 TRPM2O94759 1503 aa21.1■□□□□ 0.97
GTF3C1-211ENST00000569653 HFM1A2PYH4 1435 aa21.08■□□□□ 0.97
GTF3C1-211ENST00000569653 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.08■□□□□ 0.97
GTF3C1-211ENST00000569653 SETBP1Q9Y6X0 1596 aa21.08■□□□□ 0.97
GTF3C1-211ENST00000569653 XRN1Q8IZH2 1706 aaKnown RBP21.07■□□□□ 0.96
GTF3C1-211ENST00000569653 NEXMIFQ5QGS0 1516 aa21.07■□□□□ 0.96
GTF3C1-211ENST00000569653 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.07■□□□□ 0.96
GTF3C1-211ENST00000569653 HDGFP51858 240 aaKnown RBP21.05■□□□□ 0.96
GTF3C1-211ENST00000569653 KIF1BO60333 1816 aa21.05■□□□□ 0.96
GTF3C1-211ENST00000569653 MSH6P52701 1360 aa21.04■□□□□ 0.96
GTF3C1-211ENST00000569653 PIK3R4Q99570 1358 aa21.03■□□□□ 0.96
GTF3C1-211ENST00000569653 PHLPP1O60346 1717 aa21.02■□□□□ 0.96
GTF3C1-211ENST00000569653 SETD1AO15047 1707 aaKnown RBP21.01■□□□□ 0.95
GTF3C1-211ENST00000569653 SLAIN2Q9P270 581 aa21■□□□□ 0.95
GTF3C1-211ENST00000569653 RGS17Q9UGC6 210 aaPredicted RBP21■□□□□ 0.95
GTF3C1-211ENST00000569653 COL16A1Q07092 1604 aaPredicted RBP21■□□□□ 0.95
GTF3C1-211ENST00000569653 METP08581 1390 aa20.99■□□□□ 0.95
GTF3C1-211ENST00000569653 NCOA3Q9Y6Q9 1424 aa20.99■□□□□ 0.95
GTF3C1-211ENST00000569653 AMOTL2Q9Y2J4 779 aa20.98■□□□□ 0.95
GTF3C1-211ENST00000569653 PPLO60437 1756 aa20.95■□□□□ 0.94
GTF3C1-211ENST00000569653 ZNF326Q5BKZ1 582 aaKnown RBP20.95■□□□□ 0.94
GTF3C1-211ENST00000569653 PHF23Q9BUL5 403 aaPredicted RBP20.95■□□□□ 0.94
GTF3C1-211ENST00000569653 TRIM52Q96A61 297 aa20.94■□□□□ 0.94
GTF3C1-211ENST00000569653 NALCNQ8IZF0 1738 aa20.94■□□□□ 0.94
GTF3C1-211ENST00000569653 FOXD1Q16676 465 aa20.92■□□□□ 0.94
GTF3C1-211ENST00000569653 AHDC1Q5TGY3 1603 aaPredicted RBP20.92■□□□□ 0.94
GTF3C1-211ENST00000569653 C14orf37Q86TY3 774 aa20.91■□□□□ 0.94
GTF3C1-211ENST00000569653 C19orf44Q9H6X5 657 aa20.91■□□□□ 0.94
GTF3C1-211ENST00000569653 SLC4A1APQ9BWU0 796 aaKnown RBP20.89■□□□□ 0.93
GTF3C1-211ENST00000569653 LRP6O75581 1613 aa20.88■□□□□ 0.93
GTF3C1-211ENST00000569653 MST1RQ04912 1400 aa20.87■□□□□ 0.93
GTF3C1-211ENST00000569653 CADPS2Q86UW7 1296 aa20.87■□□□□ 0.93
GTF3C1-211ENST00000569653 IFT172Q9UG01 1749 aa20.87■□□□□ 0.93
GTF3C1-211ENST00000569653 DCCP43146 1447 aa20.87■□□□□ 0.93
GTF3C1-211ENST00000569653 NHSL1Q5SYE7 1610 aa20.86■□□□□ 0.93
GTF3C1-211ENST00000569653 JCADQ9P266 1359 aa20.85■□□□□ 0.93
GTF3C1-211ENST00000569653 ASXL1Q8IXJ9 1541 aa20.85■□□□□ 0.93
GTF3C1-211ENST00000569653 POTEAQ6S8J7 498 aa20.85■□□□□ 0.93
GTF3C1-211ENST00000569653 BRINP3Q76B58 766 aa20.85■□□□□ 0.93
GTF3C1-211ENST00000569653 SHPRHQ149N8 1683 aa20.85■□□□□ 0.93
GTF3C1-211ENST00000569653 ADGRL3Q9HAR2 1447 aa20.85■□□□□ 0.93
GTF3C1-211ENST00000569653 ATF3P18847 181 aa20.84■□□□□ 0.93
GTF3C1-211ENST00000569653 SPATA31E1Q6ZUB1 1445 aa20.83■□□□□ 0.93
GTF3C1-211ENST00000569653 PRAG1Q86YV5 1406 aa20.82■□□□□ 0.92
GTF3C1-211ENST00000569653 ROBO2Q9HCK4 1378 aa20.82■□□□□ 0.92
GTF3C1-211ENST00000569653 PTCH1Q13635 1447 aa20.81■□□□□ 0.92
GTF3C1-211ENST00000569653 MPHOSPH9Q99550 1183 aa20.79■□□□□ 0.92
GTF3C1-211ENST00000569653 RPGRIP1LQ68CZ1 1315 aa20.78■□□□□ 0.92
GTF3C1-211ENST00000569653 VGFO15240 615 aaPredicted RBP20.78■□□□□ 0.92
GTF3C1-211ENST00000569653 ADGRF5Q8IZF2 1346 aa20.78■□□□□ 0.92
GTF3C1-211ENST00000569653 DDX17Q92841 729 aaKnown RBP20.76■□□□□ 0.91
GTF3C1-211ENST00000569653 CCDC144AA2RUR9 1427 aa20.76■□□□□ 0.91
GTF3C1-211ENST00000569653 C1orf167Q5SNV9 1468 aa20.75■□□□□ 0.91
GTF3C1-211ENST00000569653 LAMC1P11047 1609 aa20.75■□□□□ 0.91
GTF3C1-211ENST00000569653 SETD5Q9C0A6 1442 aa20.73■□□□□ 0.91
GTF3C1-211ENST00000569653 SPATA31A6Q5VVP1 1343 aa20.72■□□□□ 0.91
GTF3C1-211ENST00000569653 RGL3Q3MIN7 710 aa20.71■□□□□ 0.91
GTF3C1-211ENST00000569653 KNDC1Q76NI1 1749 aa20.7■□□□□ 0.9
GTF3C1-211ENST00000569653 PIK3C2GO75747 1445 aa20.7■□□□□ 0.9
GTF3C1-211ENST00000569653 RAB3GAP2Q9H2M9 1393 aa20.69■□□□□ 0.9
GTF3C1-211ENST00000569653 TECPR2O15040 1411 aa20.68■□□□□ 0.9
GTF3C1-211ENST00000569653 CDC42BPGQ6DT37 1551 aa20.68■□□□□ 0.9
GTF3C1-211ENST00000569653 PNPLA6Q8IY17 1366 aa20.67■□□□□ 0.9
GTF3C1-211ENST00000569653 ORAI2Q96SN7 254 aa20.66■□□□□ 0.9
GTF3C1-211ENST00000569653 ANKRD30BQ9BXX2 1392 aa20.66■□□□□ 0.9
GTF3C1-211ENST00000569653 NRXN1Q9ULB1 1477 aa20.65■□□□□ 0.9
GTF3C1-211ENST00000569653 PLEKHH1Q9ULM0 1364 aa20.65■□□□□ 0.9
GTF3C1-211ENST00000569653 LRPPRCP42704 1394 aaKnown RBP20.64■□□□□ 0.89
GTF3C1-211ENST00000569653 TMEM132EQ6IEE7 984 aa20.64■□□□□ 0.89
GTF3C1-211ENST00000569653 NUTM2BA6NNL0 878 aaPredicted RBP20.63■□□□□ 0.89
GTF3C1-211ENST00000569653 NUTM2EB1AL46 878 aaPredicted RBP20.63■□□□□ 0.89
GTF3C1-211ENST00000569653 NUTM2AQ8IVF1 878 aaPredicted RBP20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms