RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 ROBO1Q9Y6N7 1651 aa27.36■■□□□ 1.97
CLK3-221ENST00000568139 MYO5BQ9ULV0 1848 aa27.35■■□□□ 1.97
CLK3-221ENST00000568139 FAM50AQ14320 339 aaKnown RBP27.35■■□□□ 1.97
CLK3-221ENST00000568139 RBM33Q96EV2 1170 aaKnown RBP27.35■■□□□ 1.97
CLK3-221ENST00000568139 ZFYVE9O95405 1425 aa27.34■■□□□ 1.97
CLK3-221ENST00000568139 BCANQ96GW7 911 aa27.31■■□□□ 1.96
CLK3-221ENST00000568139 CHD2O14647 1828 aaKnown RBP27.31■■□□□ 1.96
CLK3-221ENST00000568139 PLEKHG1Q9ULL1 1385 aa27.31■■□□□ 1.96
CLK3-221ENST00000568139 TMEM131LA2VDJ0 1609 aa27.3■■□□□ 1.96
CLK3-221ENST00000568139 GCC2Q8IWJ2 1684 aa27.3■■□□□ 1.96
CLK3-221ENST00000568139 HDGFP51858 240 aaKnown RBP27.29■■□□□ 1.96
CLK3-221ENST00000568139 MSH6P52701 1360 aa27.29■■□□□ 1.96
CLK3-221ENST00000568139 RIMS2Q9UQ26 1411 aa27.28■■□□□ 1.96
CLK3-221ENST00000568139 UNC13BO14795 1591 aa27.26■■□□□ 1.95
CLK3-221ENST00000568139 SLAIN2Q9P270 581 aa27.25■■□□□ 1.95
CLK3-221ENST00000568139 TBX22Q9Y458 520 aa27.24■■□□□ 1.95
CLK3-221ENST00000568139 PPP1R15AO75807 674 aaPredicted RBP27.23■■□□□ 1.95
CLK3-221ENST00000568139 POTEAQ6S8J7 498 aa27.22■■□□□ 1.95
CLK3-221ENST00000568139 E9PCH4 1651 aa27.21■■□□□ 1.95
CLK3-221ENST00000568139 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.21■■□□□ 1.95
CLK3-221ENST00000568139 PHLPP1O60346 1717 aa27.2■■□□□ 1.94
CLK3-221ENST00000568139 NCOA3Q9Y6Q9 1424 aa27.2■■□□□ 1.94
CLK3-221ENST00000568139 ROCK1Q13464 1354 aa27.18■■□□□ 1.94
CLK3-221ENST00000568139 CHGAP10645 457 aaKnown RBP27.17■■□□□ 1.94
CLK3-221ENST00000568139 ADAMTS13Q76LX8 1427 aa27.16■■□□□ 1.94
CLK3-221ENST00000568139 IQGAP3Q86VI3 1631 aa27.16■■□□□ 1.94
CLK3-221ENST00000568139 JCADQ9P266 1359 aa27.15■■□□□ 1.94
CLK3-221ENST00000568139 DIP2AQ14689 1571 aa27.14■■□□□ 1.94
CLK3-221ENST00000568139 PIK3R4Q99570 1358 aa27.13■■□□□ 1.93
CLK3-221ENST00000568139 NUTM2DQ5VT03 806 aaPredicted RBP27.12■■□□□ 1.93
CLK3-221ENST00000568139 COL16A1Q07092 1604 aaPredicted RBP27.12■■□□□ 1.93
CLK3-221ENST00000568139 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.1■■□□□ 1.93
CLK3-221ENST00000568139 C19orf44Q9H6X5 657 aa27.08■■□□□ 1.93
CLK3-221ENST00000568139 NUP155O75694 1391 aa27.08■■□□□ 1.93
CLK3-221ENST00000568139 C14orf37Q86TY3 774 aa27.07■■□□□ 1.92
CLK3-221ENST00000568139 CADPS2Q86UW7 1296 aa27.07■■□□□ 1.92
CLK3-221ENST00000568139 TRPM2O94759 1503 aa27.05■■□□□ 1.92
CLK3-221ENST00000568139 ATF3P18847 181 aa27.03■■□□□ 1.92
CLK3-221ENST00000568139 AHDC1Q5TGY3 1603 aaPredicted RBP27.03■■□□□ 1.92
CLK3-221ENST00000568139 PTPRUQ92729 1446 aa27.03■■□□□ 1.92
CLK3-221ENST00000568139 AMOTL2Q9Y2J4 779 aa27.03■■□□□ 1.92
CLK3-221ENST00000568139 SPATA31A6Q5VVP1 1343 aa27.02■■□□□ 1.92
CLK3-221ENST00000568139 LRP6O75581 1613 aa27■■□□□ 1.91
CLK3-221ENST00000568139 SHPRHQ149N8 1683 aa26.98■■□□□ 1.91
CLK3-221ENST00000568139 NRXN3Q9Y4C0 1643 aa26.98■■□□□ 1.91
CLK3-221ENST00000568139 SETD1AO15047 1707 aaKnown RBP26.97■■□□□ 1.91
CLK3-221ENST00000568139 ITGAEP38570 1179 aa26.97■■□□□ 1.91
CLK3-221ENST00000568139 SPHKAPQ2M3C7 1700 aa26.96■■□□□ 1.91
CLK3-221ENST00000568139 SETBP1Q9Y6X0 1596 aa26.96■■□□□ 1.91
CLK3-221ENST00000568139 BRINP3Q76B58 766 aa26.95■■□□□ 1.9
CLK3-221ENST00000568139 DCCP43146 1447 aa26.95■■□□□ 1.9
CLK3-221ENST00000568139 XRN1Q8IZH2 1706 aaKnown RBP26.95■■□□□ 1.9
CLK3-221ENST00000568139 MEX3CQ5U5Q3 659 aaKnown RBP26.92■■□□□ 1.9
CLK3-221ENST00000568139 ZNF772Q68DY9 489 aaPredicted RBP26.92■■□□□ 1.9
CLK3-221ENST00000568139 METP08581 1390 aa26.88■■□□□ 1.89
CLK3-221ENST00000568139 ZNF326Q5BKZ1 582 aaKnown RBP26.88■■□□□ 1.89
CLK3-221ENST00000568139 ASXL1Q8IXJ9 1541 aa26.86■■□□□ 1.89
CLK3-221ENST00000568139 MST1RQ04912 1400 aa26.86■■□□□ 1.89
CLK3-221ENST00000568139 SETD5Q9C0A6 1442 aa26.84■■□□□ 1.89
CLK3-221ENST00000568139 PPARGC1BQ86YN6 1023 aaKnown RBP26.84■■□□□ 1.89
CLK3-221ENST00000568139 NHSL1Q5SYE7 1610 aa26.83■■□□□ 1.89
CLK3-221ENST00000568139 NEXMIFQ5QGS0 1516 aa26.83■■□□□ 1.89
CLK3-221ENST00000568139 CLTCL1P53675 1640 aa26.83■■□□□ 1.88
CLK3-221ENST00000568139 NUTM2BA6NNL0 878 aaPredicted RBP26.8■■□□□ 1.88
CLK3-221ENST00000568139 NUTM2EB1AL46 878 aaPredicted RBP26.8■■□□□ 1.88
CLK3-221ENST00000568139 NUTM2AQ8IVF1 878 aaPredicted RBP26.8■■□□□ 1.88
CLK3-221ENST00000568139 ADGRL3Q9HAR2 1447 aa26.8■■□□□ 1.88
CLK3-221ENST00000568139 KIF1BO60333 1816 aa26.79■■□□□ 1.88
CLK3-221ENST00000568139 UPF1Q92900 1129 aaKnown RBP eCLIP26.79■■□□□ 1.88
CLK3-221ENST00000568139 TRIM52Q96A61 297 aa26.79■■□□□ 1.88
CLK3-221ENST00000568139 RXRBP28702 533 aa26.78■■□□□ 1.88
CLK3-221ENST00000568139 LRRC59Q96AG4 307 aaKnown RBP26.78■■□□□ 1.88
CLK3-221ENST00000568139 NALCNQ8IZF0 1738 aa26.76■■□□□ 1.88
CLK3-221ENST00000568139 CDK12Q9NYV4 1490 aaPredicted RBP26.74■■□□□ 1.87
CLK3-221ENST00000568139 AFF2P51816 1311 aa26.74■■□□□ 1.87
CLK3-221ENST00000568139 NAIPQ13075 1403 aa26.73■■□□□ 1.87
CLK3-221ENST00000568139 RRBP1Q9P2E9 1410 aaKnown RBP26.73■■□□□ 1.87
CLK3-221ENST00000568139 DDX17Q92841 729 aaKnown RBP26.72■■□□□ 1.87
CLK3-221ENST00000568139 PNPLA6Q8IY17 1366 aa26.71■■□□□ 1.87
CLK3-221ENST00000568139 C1orf167Q5SNV9 1468 aa26.69■■□□□ 1.86
CLK3-221ENST00000568139 VGFO15240 615 aaPredicted RBP26.69■■□□□ 1.86
CLK3-221ENST00000568139 PTCH1Q13635 1447 aa26.69■■□□□ 1.86
CLK3-221ENST00000568139 LAMC1P11047 1609 aa26.68■■□□□ 1.86
CLK3-221ENST00000568139 C8orf37Q96NL8 207 aa26.65■■□□□ 1.86
CLK3-221ENST00000568139 ROBO2Q9HCK4 1378 aa26.65■■□□□ 1.86
CLK3-221ENST00000568139 PRAG1Q86YV5 1406 aa26.65■■□□□ 1.86
CLK3-221ENST00000568139 RPGRIP1LQ68CZ1 1315 aa26.65■■□□□ 1.86
CLK3-221ENST00000568139 QTRT2Q9H974 415 aaKnown RBP26.63■■□□□ 1.85
CLK3-221ENST00000568139 SOS2Q07890 1332 aaPredicted RBP26.62■■□□□ 1.85
CLK3-221ENST00000568139 RBM6P78332 1123 aaKnown RBP26.61■■□□□ 1.85
CLK3-221ENST00000568139 ORAI2Q96SN7 254 aa26.61■■□□□ 1.85
CLK3-221ENST00000568139 HFM1A2PYH4 1435 aa26.6■■□□□ 1.85
CLK3-221ENST00000568139 PPLO60437 1756 aa26.6■■□□□ 1.85
CLK3-221ENST00000568139 RGS12O14924 1447 aa26.58■■□□□ 1.85
CLK3-221ENST00000568139 SLC4A1APQ9BWU0 796 aaKnown RBP26.57■■□□□ 1.84
CLK3-221ENST00000568139 ADAMTS2O95450 1211 aa26.56■■□□□ 1.84
CLK3-221ENST00000568139 NGLY1Q96IV0 654 aa26.56■■□□□ 1.84
CLK3-221ENST00000568139 COL22A1Q8NFW1 1626 aaPredicted RBP26.5■■□□□ 1.83
CLK3-221ENST00000568139 FNBP4Q8N3X1 1017 aaPredicted RBP26.48■■□□□ 1.83
CLK3-221ENST00000568139 USP21Q9UK80 565 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms