RNA–Protein interactions for RNA: ENST00000566200.1

ABCA3-204, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 3

Gene ABCA3, Length 1,232 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-204ENST00000566200 ROCK1Q13464 1354 aa29.06■■■□□ 2.24
ABCA3-204ENST00000566200 KCNA6P17658 529 aa29.06■■■□□ 2.24
ABCA3-204ENST00000566200 TMEM94Q12767 1356 aa29.05■■■□□ 2.24
ABCA3-204ENST00000566200 IQGAP3Q86VI3 1631 aa29.04■■■□□ 2.24
ABCA3-204ENST00000566200 NKTRP30414 1462 aaKnown RBP29■■■□□ 2.23
ABCA3-204ENST00000566200 RBM33Q96EV2 1170 aaKnown RBP29■■■□□ 2.23
ABCA3-204ENST00000566200 RIMS2Q9UQ26 1411 aa29■■■□□ 2.23
ABCA3-204ENST00000566200 PLEKHG1Q9ULL1 1385 aa28.99■■■□□ 2.23
ABCA3-204ENST00000566200 CHD2O14647 1828 aaKnown RBP28.97■■■□□ 2.23
ABCA3-204ENST00000566200 FAM135BQ49AJ0 1406 aa28.97■■■□□ 2.23
ABCA3-204ENST00000566200 PROSER2Q86WR7 435 aaPredicted RBP28.96■■■□□ 2.23
ABCA3-204ENST00000566200 PPARGC1BQ86YN6 1023 aaKnown RBP28.95■■■□□ 2.22
ABCA3-204ENST00000566200 ROBO1Q9Y6N7 1651 aa28.93■■■□□ 2.22
ABCA3-204ENST00000566200 BCANQ96GW7 911 aa28.93■■■□□ 2.22
ABCA3-204ENST00000566200 ITGAEP38570 1179 aa28.92■■■□□ 2.22
ABCA3-204ENST00000566200 NUP155O75694 1391 aa28.9■■■□□ 2.22
ABCA3-204ENST00000566200 PHF23Q9BUL5 403 aaPredicted RBP28.9■■■□□ 2.22
ABCA3-204ENST00000566200 PPP1R15AO75807 674 aaPredicted RBP28.88■■■□□ 2.21
ABCA3-204ENST00000566200 ADAMTS13Q76LX8 1427 aa28.87■■■□□ 2.21
ABCA3-204ENST00000566200 CHGAP10645 457 aaKnown RBP28.87■■■□□ 2.21
ABCA3-204ENST00000566200 HDGFP51858 240 aaKnown RBP28.86■■■□□ 2.21
ABCA3-204ENST00000566200 NUTM2DQ5VT03 806 aaPredicted RBP28.85■■■□□ 2.21
ABCA3-204ENST00000566200 TBX22Q9Y458 520 aa28.85■■■□□ 2.21
ABCA3-204ENST00000566200 MSH6P52701 1360 aa28.84■■■□□ 2.21
ABCA3-204ENST00000566200 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.83■■■□□ 2.21
ABCA3-204ENST00000566200 DIP2AQ14689 1571 aa28.83■■■□□ 2.21
ABCA3-204ENST00000566200 SPHKAPQ2M3C7 1700 aa28.82■■■□□ 2.2
ABCA3-204ENST00000566200 RGS17Q9UGC6 210 aaPredicted RBP28.81■■■□□ 2.2
ABCA3-204ENST00000566200 SLAIN2Q9P270 581 aa28.77■■■□□ 2.2
ABCA3-204ENST00000566200 RRBP1Q9P2E9 1410 aaKnown RBP28.76■■■□□ 2.19
ABCA3-204ENST00000566200 NCOA3Q9Y6Q9 1424 aa28.76■■■□□ 2.19
ABCA3-204ENST00000566200 NRXN3Q9Y4C0 1643 aa28.76■■■□□ 2.19
ABCA3-204ENST00000566200 PIK3R4Q99570 1358 aa28.75■■■□□ 2.19
ABCA3-204ENST00000566200 PHLPP1O60346 1717 aa28.75■■■□□ 2.19
ABCA3-204ENST00000566200 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.74■■■□□ 2.19
ABCA3-204ENST00000566200 TRPM2O94759 1503 aa28.74■■■□□ 2.19
ABCA3-204ENST00000566200 PTPRUQ92729 1446 aa28.73■■■□□ 2.19
ABCA3-204ENST00000566200 SETBP1Q9Y6X0 1596 aa28.7■■■□□ 2.18
ABCA3-204ENST00000566200 NAIPQ13075 1403 aa28.69■■■□□ 2.18
ABCA3-204ENST00000566200 CLTCL1P53675 1640 aa28.69■■■□□ 2.18
ABCA3-204ENST00000566200 COL16A1Q07092 1604 aaPredicted RBP28.69■■■□□ 2.18
ABCA3-204ENST00000566200 XRN1Q8IZH2 1706 aaKnown RBP28.68■■■□□ 2.18
ABCA3-204ENST00000566200 AMOTL2Q9Y2J4 779 aa28.65■■■□□ 2.18
ABCA3-204ENST00000566200 NEXMIFQ5QGS0 1516 aa28.64■■■□□ 2.17
ABCA3-204ENST00000566200 C14orf37Q86TY3 774 aa28.63■■■□□ 2.17
ABCA3-204ENST00000566200 C19orf44Q9H6X5 657 aa28.63■■■□□ 2.17
ABCA3-204ENST00000566200 POTEAQ6S8J7 498 aa28.62■■■□□ 2.17
ABCA3-204ENST00000566200 JCADQ9P266 1359 aa28.62■■■□□ 2.17
ABCA3-204ENST00000566200 CADPS2Q86UW7 1296 aa28.6■■■□□ 2.17
ABCA3-204ENST00000566200 AHDC1Q5TGY3 1603 aaPredicted RBP28.6■■■□□ 2.17
ABCA3-204ENST00000566200 ZNF326Q5BKZ1 582 aaKnown RBP28.59■■■□□ 2.17
ABCA3-204ENST00000566200 METP08581 1390 aa28.59■■■□□ 2.17
ABCA3-204ENST00000566200 KIF1BO60333 1816 aa28.58■■■□□ 2.17
ABCA3-204ENST00000566200 ATF3P18847 181 aa28.56■■■□□ 2.16
ABCA3-204ENST00000566200 HFM1A2PYH4 1435 aa28.54■■■□□ 2.16
ABCA3-204ENST00000566200 DCCP43146 1447 aa28.54■■■□□ 2.16
ABCA3-204ENST00000566200 LRP6O75581 1613 aa28.54■■■□□ 2.16
ABCA3-204ENST00000566200 SHPRHQ149N8 1683 aa28.52■■■□□ 2.16
ABCA3-204ENST00000566200 BRINP3Q76B58 766 aa28.51■■■□□ 2.15
ABCA3-204ENST00000566200 SETD1AO15047 1707 aaKnown RBP28.51■■■□□ 2.15
ABCA3-204ENST00000566200 NALCNQ8IZF0 1738 aa28.49■■■□□ 2.15
ABCA3-204ENST00000566200 MST1RQ04912 1400 aa28.49■■■□□ 2.15
ABCA3-204ENST00000566200 ASXL1Q8IXJ9 1541 aa28.48■■■□□ 2.15
ABCA3-204ENST00000566200 SPATA31A6Q5VVP1 1343 aa28.46■■■□□ 2.15
ABCA3-204ENST00000566200 TRIM52Q96A61 297 aa28.46■■■□□ 2.15
ABCA3-204ENST00000566200 NHSL1Q5SYE7 1610 aa28.46■■■□□ 2.15
ABCA3-204ENST00000566200 ADGRL3Q9HAR2 1447 aa28.45■■■□□ 2.15
ABCA3-204ENST00000566200 PPLO60437 1756 aa28.42■■■□□ 2.14
ABCA3-204ENST00000566200 SLC4A1APQ9BWU0 796 aaKnown RBP28.4■■■□□ 2.14
ABCA3-204ENST00000566200 SETD5Q9C0A6 1442 aa28.38■■■□□ 2.13
ABCA3-204ENST00000566200 PTCH1Q13635 1447 aa28.37■■■□□ 2.13
ABCA3-204ENST00000566200 VGFO15240 615 aaPredicted RBP28.36■■■□□ 2.13
ABCA3-204ENST00000566200 ROBO2Q9HCK4 1378 aa28.36■■■□□ 2.13
ABCA3-204ENST00000566200 PRAG1Q86YV5 1406 aa28.35■■■□□ 2.13
ABCA3-204ENST00000566200 RPGRIP1LQ68CZ1 1315 aa28.34■■■□□ 2.13
ABCA3-204ENST00000566200 FOXD1Q16676 465 aa28.33■■■□□ 2.13
ABCA3-204ENST00000566200 MEX3CQ5U5Q3 659 aaKnown RBP28.33■■■□□ 2.13
ABCA3-204ENST00000566200 DDX17Q92841 729 aaKnown RBP28.33■■■□□ 2.13
ABCA3-204ENST00000566200 C1orf167Q5SNV9 1468 aa28.31■■■□□ 2.12
ABCA3-204ENST00000566200 LAMC1P11047 1609 aa28.3■■■□□ 2.12
ABCA3-204ENST00000566200 NUTM2BA6NNL0 878 aaPredicted RBP28.29■■■□□ 2.12
ABCA3-204ENST00000566200 NUTM2EB1AL46 878 aaPredicted RBP28.29■■■□□ 2.12
ABCA3-204ENST00000566200 NUTM2AQ8IVF1 878 aaPredicted RBP28.29■■■□□ 2.12
ABCA3-204ENST00000566200 IFT172Q9UG01 1749 aa28.27■■■□□ 2.12
ABCA3-204ENST00000566200 ZNF772Q68DY9 489 aaPredicted RBP28.27■■■□□ 2.12
ABCA3-204ENST00000566200 LRRC59Q96AG4 307 aaKnown RBP28.26■■■□□ 2.11
ABCA3-204ENST00000566200 PNPLA6Q8IY17 1366 aa28.25■■■□□ 2.11
ABCA3-204ENST00000566200 SPATA31E1Q6ZUB1 1445 aa28.25■■■□□ 2.11
ABCA3-204ENST00000566200 ADGRF5Q8IZF2 1346 aa28.23■■■□□ 2.11
ABCA3-204ENST00000566200 CCDC144AA2RUR9 1427 aa28.23■■■□□ 2.11
ABCA3-204ENST00000566200 ORAI2Q96SN7 254 aa28.21■■■□□ 2.11
ABCA3-204ENST00000566200 MPHOSPH9Q99550 1183 aa28.21■■■□□ 2.11
ABCA3-204ENST00000566200 AFF2P51816 1311 aa28.19■■■□□ 2.1
ABCA3-204ENST00000566200 CDC42BPGQ6DT37 1551 aa28.18■■■□□ 2.1
ABCA3-204ENST00000566200 SOS2Q07890 1332 aaPredicted RBP28.17■■■□□ 2.1
ABCA3-204ENST00000566200 RGL3Q3MIN7 710 aa28.16■■■□□ 2.1
ABCA3-204ENST00000566200 RXRBP28702 533 aa28.14■■■□□ 2.1
ABCA3-204ENST00000566200 TECPR2O15040 1411 aa28.14■■■□□ 2.1
ABCA3-204ENST00000566200 CDK12Q9NYV4 1490 aaPredicted RBP28.14■■■□□ 2.09
ABCA3-204ENST00000566200 KNDC1Q76NI1 1749 aa28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms