RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-208ENST00000563911 WDR62O43379 1518 aa11.11□□□□□ -0.63
HERPUD1-208ENST00000563911 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.11□□□□□ -0.63
HERPUD1-208ENST00000563911 ST18O60284 1047 aa11.11□□□□□ -0.63
HERPUD1-208ENST00000563911 PROX2Q3B8N5 592 aa11.11□□□□□ -0.63
HERPUD1-208ENST00000563911 TATDN2Q93075 761 aa11.11□□□□□ -0.63
HERPUD1-208ENST00000563911 BEGAINQ9BUH8 593 aa11.11□□□□□ -0.63
HERPUD1-208ENST00000563911 PSEN2P49810 448 aa11.1□□□□□ -0.63
HERPUD1-208ENST00000563911 C3orf80F5H4A9 247 aa11.09□□□□□ -0.63
HERPUD1-208ENST00000563911 EMP3P54852 163 aa11.09□□□□□ -0.63
HERPUD1-208ENST00000563911 MARVELD3Q96A59 401 aa11.08□□□□□ -0.64
HERPUD1-208ENST00000563911 GOPCQ9HD26 462 aa11.08□□□□□ -0.64
HERPUD1-208ENST00000563911 SMAPO00193 183 aa11.07□□□□□ -0.64
HERPUD1-208ENST00000563911 ARHGAP33O14559 1287 aa11.07□□□□□ -0.64
HERPUD1-208ENST00000563911 ONECUT3O60422 494 aaPredicted RBP11.07□□□□□ -0.64
HERPUD1-208ENST00000563911 PCMTD1Q96MG8 357 aaPredicted RBP11.07□□□□□ -0.64
HERPUD1-208ENST00000563911 RSPH6AQ9H0K4 717 aa11.07□□□□□ -0.64
HERPUD1-208ENST00000563911 KIAA1468Q9P260 1216 aa11.07□□□□□ -0.64
HERPUD1-208ENST00000563911 DNAJB2P25686 324 aa11.06□□□□□ -0.64
HERPUD1-208ENST00000563911 ZBED2Q9BTP6 218 aa11.06□□□□□ -0.64
HERPUD1-208ENST00000563911 FAM163AQ96GL9 167 aaPredicted RBP11.05□□□□□ -0.64
HERPUD1-208ENST00000563911 ATP1B4Q9UN42 357 aaPredicted RBP11.05□□□□□ -0.64
HERPUD1-208ENST00000563911 AXIN2Q9Y2T1 843 aa11.05□□□□□ -0.64
HERPUD1-208ENST00000563911 FAM205CA6NFA0 338 aa11.04□□□□□ -0.64
HERPUD1-208ENST00000563911 SH3D19Q5HYK7 790 aa11.04□□□□□ -0.64
HERPUD1-208ENST00000563911 SULF1Q8IWU6 871 aa11.03□□□□□ -0.64
HERPUD1-208ENST00000563911 DDX11L8A8MPP1 907 aa11.02□□□□□ -0.65
HERPUD1-208ENST00000563911 SKIV2LQ15477 1246 aaKnown RBP11.02□□□□□ -0.65
HERPUD1-208ENST00000563911 DMRTA1Q5VZB9 504 aa11.02□□□□□ -0.65
HERPUD1-208ENST00000563911 POTEEQ6S8J3 1075 aa11.02□□□□□ -0.65
HERPUD1-208ENST00000563911 TMEM134Q9H6X4 195 aa11.02□□□□□ -0.65
HERPUD1-208ENST00000563911 PBX2P40425 430 aa11.01□□□□□ -0.65
HERPUD1-208ENST00000563911 RABGEF1Q9UJ41 708 aa11.01□□□□□ -0.65
HERPUD1-208ENST00000563911 WIZO95785 1651 aa11.01□□□□□ -0.65
HERPUD1-208ENST00000563911 ZNF687Q8N1G0 1237 aa11□□□□□ -0.65
HERPUD1-208ENST00000563911 POLR3EQ9NVU0 708 aa11□□□□□ -0.65
HERPUD1-208ENST00000563911 FANCD2Q9BXW9 1451 aa11□□□□□ -0.65
HERPUD1-208ENST00000563911 SLC4A5Q9BY07 1137 aa10.99□□□□□ -0.65
HERPUD1-208ENST00000563911 TBC1D2Q9BYX2 928 aa10.99□□□□□ -0.65
HERPUD1-208ENST00000563911 CEP164Q9UPV0 1460 aa10.99□□□□□ -0.65
HERPUD1-208ENST00000563911 URB2Q14146 1524 aaKnown RBP10.99□□□□□ -0.65
HERPUD1-208ENST00000563911 CD46P15529 392 aa10.98□□□□□ -0.65
HERPUD1-208ENST00000563911 DIXDC1Q155Q3 683 aa10.98□□□□□ -0.65
HERPUD1-208ENST00000563911 MYSM1Q5VVJ2 828 aa10.97□□□□□ -0.65
HERPUD1-208ENST00000563911 SEPT9Q9UHD8 586 aaPredicted RBP10.97□□□□□ -0.65
HERPUD1-208ENST00000563911 RIMBP3CA6NJZ7 1639 aa10.97□□□□□ -0.65
HERPUD1-208ENST00000563911 RIMBP3BA6NNM3 1639 aa10.97□□□□□ -0.65
HERPUD1-208ENST00000563911 RIMBP3Q9UFD9 1639 aa10.97□□□□□ -0.65
HERPUD1-208ENST00000563911 HDGFP51858 240 aaKnown RBP10.96□□□□□ -0.65
HERPUD1-208ENST00000563911 NUTM1Q86Y26 1132 aa10.96□□□□□ -0.65
HERPUD1-208ENST00000563911 RDH13Q8NBN7 331 aa10.96□□□□□ -0.65
HERPUD1-208ENST00000563911 PROCA1Q8NCQ7 364 aaPredicted RBP10.96□□□□□ -0.65
HERPUD1-208ENST00000563911 HS3ST6Q96QI5 342 aa10.96□□□□□ -0.65
HERPUD1-208ENST00000563911 VPS9D1Q9Y2B5 631 aa10.96□□□□□ -0.65
HERPUD1-208ENST00000563911 CFTRP13569 1480 aa10.94□□□□□ -0.66
HERPUD1-208ENST00000563911 RSPH4AQ5TD94 716 aa10.94□□□□□ -0.66
HERPUD1-208ENST00000563911 SPIRE2Q8WWL2 714 aa10.94□□□□□ -0.66
HERPUD1-208ENST00000563911 CLK2P49760 499 aaKnown RBP10.93□□□□□ -0.66
HERPUD1-208ENST00000563911 SWT1Q5T5J6 900 aaKnown RBP10.93□□□□□ -0.66
HERPUD1-208ENST00000563911 ZNF608Q9ULD9 1512 aaPredicted RBP10.93□□□□□ -0.66
HERPUD1-208ENST00000563911 POTEB3A0JP26 581 aa10.92□□□□□ -0.66
HERPUD1-208ENST00000563911 FAM98CQ17RN3 349 aaKnown RBP10.92□□□□□ -0.66
HERPUD1-208ENST00000563911 POTEBQ6S5H4 581 aa10.92□□□□□ -0.66
HERPUD1-208ENST00000563911 RIC3Q7Z5B4 369 aa10.91□□□□□ -0.66
HERPUD1-208ENST00000563911 NBPF3Q9H094 633 aa10.91□□□□□ -0.66
HERPUD1-208ENST00000563911 ARHGEF11O15085 1522 aa10.9□□□□□ -0.66
HERPUD1-208ENST00000563911 SLC4A3P48751 1232 aa10.9□□□□□ -0.66
HERPUD1-208ENST00000563911 FLIIQ13045 1269 aa10.9□□□□□ -0.66
HERPUD1-208ENST00000563911 CYB5RLQ6IPT4 315 aa10.89□□□□□ -0.67
HERPUD1-208ENST00000563911 LAPTM4BQ86VI4 370 aa10.88□□□□□ -0.67
HERPUD1-208ENST00000563911 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.88□□□□□ -0.67
HERPUD1-208ENST00000563911 LIMD1Q9UGP4 676 aa10.88□□□□□ -0.67
HERPUD1-208ENST00000563911 MOXD2PA6NHM9 499 aa10.87□□□□□ -0.67
HERPUD1-208ENST00000563911 TK2O00142 265 aa10.87□□□□□ -0.67
HERPUD1-208ENST00000563911 KDM4AO75164 1064 aa10.87□□□□□ -0.67
HERPUD1-208ENST00000563911 GCGRP47871 477 aa10.87□□□□□ -0.67
HERPUD1-208ENST00000563911 SAMD7Q7Z3H4 446 aa10.87□□□□□ -0.67
HERPUD1-208ENST00000563911 ZMYND15Q9H091 742 aa10.87□□□□□ -0.67
HERPUD1-208ENST00000563911 BHMG1C9JSJ3 638 aaPredicted RBP10.86□□□□□ -0.67
HERPUD1-208ENST00000563911 SLC10A3P09131 477 aa10.86□□□□□ -0.67
HERPUD1-208ENST00000563911 NDUFV2P19404 249 aa10.86□□□□□ -0.67
HERPUD1-208ENST00000563911 SLF2Q8IX21 1173 aa10.86□□□□□ -0.67
HERPUD1-208ENST00000563911 MRPL50Q8N5N7 158 aaKnown RBP10.86□□□□□ -0.67
HERPUD1-208ENST00000563911 SPTLC1O15269 473 aa10.85□□□□□ -0.67
HERPUD1-208ENST00000563911 RNF40O75150 1001 aa10.85□□□□□ -0.67
HERPUD1-208ENST00000563911 LSM11P83369 360 aaKnown RBP eCLIP10.85□□□□□ -0.67
HERPUD1-208ENST00000563911 CSPP1Q1MSJ5 1256 aa10.85□□□□□ -0.67
HERPUD1-208ENST00000563911 LCE2DQ5TA82 110 aaPredicted RBP10.85□□□□□ -0.67
HERPUD1-208ENST00000563911 RSBN1LQ6PCB5 846 aaPredicted RBP10.85□□□□□ -0.67
HERPUD1-208ENST00000563911 ADGRD1Q6QNK2 874 aa10.85□□□□□ -0.67
HERPUD1-208ENST00000563911 RSF1Q96T23 1441 aaPredicted RBP10.84□□□□□ -0.67
HERPUD1-208ENST00000563911 SUPT5HO00267 1087 aaKnown RBP10.84□□□□□ -0.67
HERPUD1-208ENST00000563911 ZFRQ96KR1 1074 aaKnown RBP10.84□□□□□ -0.67
HERPUD1-208ENST00000563911 USP46P62068 366 aa10.83□□□□□ -0.68
HERPUD1-208ENST00000563911 STAC3Q96MF2 364 aa10.83□□□□□ -0.68
HERPUD1-208ENST00000563911 ANKRD13DQ6ZTN6 518 aa10.82□□□□□ -0.68
HERPUD1-208ENST00000563911 ARAP1Q96P48 1450 aa10.81□□□□□ -0.68
HERPUD1-208ENST00000563911 GJA5P36382 358 aa10.81□□□□□ -0.68
HERPUD1-208ENST00000563911 RFC5P40937 340 aa10.81□□□□□ -0.68
HERPUD1-208ENST00000563911 TUSC1Q2TAM9 212 aa10.81□□□□□ -0.68
HERPUD1-208ENST00000563911 HOXA2O43364 376 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms