RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 PCDHB3Q9Y5E6 796 aa9.73□□□□□ -0.85
LRRC28-218ENST00000560236 ZPR1O75312 459 aa9.71□□□□□ -0.86
LRRC28-218ENST00000560236 GGCXP38435 758 aa9.71□□□□□ -0.86
LRRC28-218ENST00000560236 TESPA1A2RU30 521 aaPredicted RBP9.7□□□□□ -0.86
LRRC28-218ENST00000560236 LAPTM4AQ15012 233 aa9.7□□□□□ -0.86
LRRC28-218ENST00000560236 SMYD5Q6GMV2 418 aa9.7□□□□□ -0.86
LRRC28-218ENST00000560236 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.69□□□□□ -0.86
LRRC28-218ENST00000560236 OATP04181 439 aa9.69□□□□□ -0.86
LRRC28-218ENST00000560236 HIC1Q14526 733 aa9.69□□□□□ -0.86
LRRC28-218ENST00000560236 RBM26Q5T8P6 1007 aaKnown RBP9.69□□□□□ -0.86
LRRC28-218ENST00000560236 BLOC1S3Q6QNY0 202 aa9.69□□□□□ -0.86
LRRC28-218ENST00000560236 V9GY48 417 aaPredicted RBP9.69□□□□□ -0.86
LRRC28-218ENST00000560236 GFRA3O60609 400 aa9.68□□□□□ -0.86
LRRC28-218ENST00000560236 KMT5BQ4FZB7 885 aa9.68□□□□□ -0.86
LRRC28-218ENST00000560236 CFHP08603 1231 aa9.67□□□□□ -0.86
LRRC28-218ENST00000560236 ACTN4O43707 911 aaKnown RBP9.66□□□□□ -0.86
LRRC28-218ENST00000560236 PXYLP1Q8TE99 480 aa9.66□□□□□ -0.86
LRRC28-218ENST00000560236 TMUB1Q9BVT8 246 aa9.66□□□□□ -0.86
LRRC28-218ENST00000560236 HAP1P54257 671 aaPredicted RBP9.65□□□□□ -0.86
LRRC28-218ENST00000560236 SLC10A3P09131 477 aa9.64□□□□□ -0.87
LRRC28-218ENST00000560236 METTL3Q86U44 580 aaKnown RBP9.64□□□□□ -0.87
LRRC28-218ENST00000560236 GNPATO15228 680 aa9.63□□□□□ -0.87
LRRC28-218ENST00000560236 TLL1O43897 1013 aa9.62□□□□□ -0.87
LRRC28-218ENST00000560236 NRG2O14511 850 aaPredicted RBP9.61□□□□□ -0.87
LRRC28-218ENST00000560236 FECHP22830 423 aa9.61□□□□□ -0.87
LRRC28-218ENST00000560236 RSPH4AQ5TD94 716 aa9.61□□□□□ -0.87
LRRC28-218ENST00000560236 RNF223E7ERA6 249 aa9.6□□□□□ -0.87
LRRC28-218ENST00000560236 NR1I2O75469 434 aa9.6□□□□□ -0.87
LRRC28-218ENST00000560236 GPR37O15354 613 aa9.59□□□□□ -0.87
LRRC28-218ENST00000560236 PDZRN3Q9UPQ7 1066 aa9.59□□□□□ -0.87
LRRC28-218ENST00000560236 S1PR4O95977 384 aa9.57□□□□□ -0.88
LRRC28-218ENST00000560236 TRAF7Q6Q0C0 670 aa9.57□□□□□ -0.88
LRRC28-218ENST00000560236 KDM2AQ9Y2K7 1162 aa9.57□□□□□ -0.88
LRRC28-218ENST00000560236 ADH1BP00325 375 aa9.56□□□□□ -0.88
LRRC28-218ENST00000560236 SLC19A1P41440 591 aa9.56□□□□□ -0.88
LRRC28-218ENST00000560236 DAXXQ9UER7 740 aaPredicted RBP9.56□□□□□ -0.88
LRRC28-218ENST00000560236 GPIHBP1Q8IV16 184 aa9.55□□□□□ -0.88
LRRC28-218ENST00000560236 ANKLE1Q8NAG6 615 aa9.55□□□□□ -0.88
LRRC28-218ENST00000560236 RDH13Q8NBN7 331 aa9.55□□□□□ -0.88
LRRC28-218ENST00000560236 LCE2BO14633 110 aa9.54□□□□□ -0.88
LRRC28-218ENST00000560236 PPEF1O14829 653 aaPredicted RBP9.54□□□□□ -0.88
LRRC28-218ENST00000560236 PUS10Q3MIT2 529 aaKnown RBP9.54□□□□□ -0.88
LRRC28-218ENST00000560236 SCUBE3Q8IX30 993 aa9.54□□□□□ -0.88
LRRC28-218ENST00000560236 DDX11L8A8MPP1 907 aa9.53□□□□□ -0.88
LRRC28-218ENST00000560236 NLRP7Q8WX94 980 aa9.53□□□□□ -0.88
LRRC28-218ENST00000560236 EMID1Q96A84 441 aaPredicted RBP9.52□□□□□ -0.89
LRRC28-218ENST00000560236 SLC6A16Q9GZN6 736 aa9.52□□□□□ -0.89
LRRC28-218ENST00000560236 SPRYD7Q5W111 196 aa9.5□□□□□ -0.89
LRRC28-218ENST00000560236 SULF1Q8IWU6 871 aa9.5□□□□□ -0.89
LRRC28-218ENST00000560236 PHOX2BQ99453 314 aa9.5□□□□□ -0.89
LRRC28-218ENST00000560236 SPSB2Q99619 263 aa9.5□□□□□ -0.89
LRRC28-218ENST00000560236 FUT2Q10981 343 aa9.48□□□□□ -0.89
LRRC28-218ENST00000560236 MORN1Q5T089 497 aa9.48□□□□□ -0.89
LRRC28-218ENST00000560236 LIAT1Q6ZQX7 453 aa9.48□□□□□ -0.89
LRRC28-218ENST00000560236 TRIM67Q6ZTA4 783 aa9.48□□□□□ -0.89
LRRC28-218ENST00000560236 ZNF598Q86UK7 904 aaKnown RBP9.48□□□□□ -0.89
LRRC28-218ENST00000560236 TULP1O00294 542 aaPredicted RBP9.47□□□□□ -0.89
LRRC28-218ENST00000560236 ATP6V1AP38606 617 aa9.47□□□□□ -0.89
LRRC28-218ENST00000560236 GCGRP47871 477 aa9.47□□□□□ -0.89
LRRC28-218ENST00000560236 ZNF697Q5TEC3 545 aa9.46□□□□□ -0.9
LRRC28-218ENST00000560236 VSIG10Q8N0Z9 540 aa9.46□□□□□ -0.9
LRRC28-218ENST00000560236 PLA2G2CQ5R387 149 aa9.44□□□□□ -0.9
LRRC28-218ENST00000560236 SLC27A5Q9Y2P5 690 aa9.44□□□□□ -0.9
LRRC28-218ENST00000560236 FMNL1O95466 1100 aaPredicted RBP9.43□□□□□ -0.9
LRRC28-218ENST00000560236 PRR20EP86478 221 aa9.43□□□□□ -0.9
LRRC28-218ENST00000560236 PRR20CP86479 221 aa9.43□□□□□ -0.9
LRRC28-218ENST00000560236 PRR20DP86480 221 aa9.43□□□□□ -0.9
LRRC28-218ENST00000560236 PRR20BP86481 221 aa9.43□□□□□ -0.9
LRRC28-218ENST00000560236 PRR20AP86496 221 aa9.43□□□□□ -0.9
LRRC28-218ENST00000560236 MAP2K5Q13163 448 aa9.43□□□□□ -0.9
LRRC28-218ENST00000560236 THAP11Q96EK4 314 aa9.43□□□□□ -0.9
LRRC28-218ENST00000560236 PKDCCQ504Y2 493 aa9.42□□□□□ -0.9
LRRC28-218ENST00000560236 TNFRSF10AO00220 468 aa9.41□□□□□ -0.9
LRRC28-218ENST00000560236 GRIPAP1Q4V328 841 aa9.41□□□□□ -0.9
LRRC28-218ENST00000560236 SALL2Q9Y467 1007 aaPredicted RBP9.4□□□□□ -0.9
LRRC28-218ENST00000560236 IRF6O14896 467 aa9.39□□□□□ -0.91
LRRC28-218ENST00000560236 GDF9O60383 454 aa9.39□□□□□ -0.91
LRRC28-218ENST00000560236 DGAT1O75907 488 aa9.39□□□□□ -0.91
LRRC28-218ENST00000560236 ZNF787Q6DD87 383 aa9.39□□□□□ -0.91
LRRC28-218ENST00000560236 FAM160A2Q8N612 972 aaPredicted RBP9.39□□□□□ -0.91
LRRC28-218ENST00000560236 FCF1Q9Y324 198 aaKnown RBP9.39□□□□□ -0.91
LRRC28-218ENST00000560236 BRICD5Q6PL45 260 aa9.38□□□□□ -0.91
LRRC28-218ENST00000560236 FAM187AA6NFU0 413 aa9.37□□□□□ -0.91
LRRC28-218ENST00000560236 RPIAP49247 311 aa9.37□□□□□ -0.91
LRRC28-218ENST00000560236 MINK1Q8N4C8 1332 aaPredicted RBP9.36□□□□□ -0.91
LRRC28-218ENST00000560236 CD2BP2O95400 341 aaKnown RBP9.36□□□□□ -0.91
LRRC28-218ENST00000560236 CD46P15529 392 aa9.36□□□□□ -0.91
LRRC28-218ENST00000560236 MDM2Q00987 491 aaPredicted RBP9.36□□□□□ -0.91
LRRC28-218ENST00000560236 FOXC1Q12948 553 aa9.36□□□□□ -0.91
LRRC28-218ENST00000560236 RNF19BQ6ZMZ0 732 aa9.36□□□□□ -0.91
LRRC28-218ENST00000560236 PRDM9Q9NQV7 894 aa9.36□□□□□ -0.91
LRRC28-218ENST00000560236 MYT1Q01538 1121 aa9.35□□□□□ -0.91
LRRC28-218ENST00000560236 Q3C1V9 767 aa9.35□□□□□ -0.91
LRRC28-218ENST00000560236 KDM4AO75164 1064 aa9.34□□□□□ -0.91
LRRC28-218ENST00000560236 MSS51Q4VC12 460 aa9.34□□□□□ -0.91
LRRC28-218ENST00000560236 LMOD2Q6P5Q4 547 aa9.34□□□□□ -0.91
LRRC28-218ENST00000560236 PKD2L1Q9P0L9 805 aa9.34□□□□□ -0.91
LRRC28-218ENST00000560236 CCDC102AQ96A19 550 aa9.33□□□□□ -0.92
LRRC28-218ENST00000560236 ZBTB24O43167 697 aaPredicted RBP9.31□□□□□ -0.92
LRRC28-218ENST00000560236 USP46P62068 366 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms