RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 ROCK2O75116 1388 aaKnown RBP15.86■□□□□ 0.13
USP3-218ENST00000560202 TRPM1Q7Z4N2 1603 aa15.86■□□□□ 0.13
USP3-218ENST00000560202 CARD11Q9BXL7 1154 aa15.86■□□□□ 0.13
USP3-218ENST00000560202 RIMS1Q86UR5 1692 aaKnown RBP15.85■□□□□ 0.13
USP3-218ENST00000560202 A2ML1A8K2U0 1454 aa15.85■□□□□ 0.13
USP3-218ENST00000560202 NRXN1Q9ULB1 1477 aa15.85■□□□□ 0.13
USP3-218ENST00000560202 VGFO15240 615 aaPredicted RBP15.85■□□□□ 0.13
USP3-218ENST00000560202 HSPA5P11021 654 aaKnown RBP15.85■□□□□ 0.13
USP3-218ENST00000560202 NBPF1Q3BBV0 1214 aa15.85■□□□□ 0.13
USP3-218ENST00000560202 HIRIP3Q9BW71 556 aaPredicted RBP15.85■□□□□ 0.13
USP3-218ENST00000560202 NEXMIFQ5QGS0 1516 aa15.85■□□□□ 0.13
USP3-218ENST00000560202 NLRP1Q9C000 1473 aa15.84■□□□□ 0.13
USP3-218ENST00000560202 PPLO60437 1756 aa15.83■□□□□ 0.13
USP3-218ENST00000560202 GPRASP1Q5JY77 1395 aa15.83■□□□□ 0.12
USP3-218ENST00000560202 NUTM2DQ5VT03 806 aaPredicted RBP15.83■□□□□ 0.12
USP3-218ENST00000560202 ZFYVE9O95405 1425 aa15.82■□□□□ 0.12
USP3-218ENST00000560202 USP47Q96K76 1375 aa15.81■□□□□ 0.12
USP3-218ENST00000560202 MYO5BQ9ULV0 1848 aa15.81■□□□□ 0.12
USP3-218ENST00000560202 PIK3C2GO75747 1445 aa15.81■□□□□ 0.12
USP3-218ENST00000560202 CFAP70Q5T0N1 1121 aa15.8■□□□□ 0.12
USP3-218ENST00000560202 C14orf93Q9H972 538 aaKnown RBP15.79■□□□□ 0.12
USP3-218ENST00000560202 RIMS2Q9UQ26 1411 aa15.79■□□□□ 0.12
USP3-218ENST00000560202 KDM5AP29375 1690 aaKnown RBP15.78■□□□□ 0.12
USP3-218ENST00000560202 KIAA1210Q9ULL0 1709 aa15.78■□□□□ 0.12
USP3-218ENST00000560202 LAMC1P11047 1609 aa15.78■□□□□ 0.12
USP3-218ENST00000560202 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.77■□□□□ 0.12
USP3-218ENST00000560202 PTPRMP28827 1452 aa15.77■□□□□ 0.12
USP3-218ENST00000560202 UBR1Q8IWV7 1749 aa15.77■□□□□ 0.12
USP3-218ENST00000560202 HDGFP51858 240 aaKnown RBP15.76■□□□□ 0.11
USP3-218ENST00000560202 TMEM2Q9UHN6 1383 aa15.76■□□□□ 0.11
USP3-218ENST00000560202 MYO3AQ8NEV4 1616 aa15.75■□□□□ 0.11
USP3-218ENST00000560202 ST20-MTHFSA0A0A6YYL1 179 aa15.74■□□□□ 0.11
USP3-218ENST00000560202 THEMISQ8N1K5 641 aaPredicted RBP15.73■□□□□ 0.11
USP3-218ENST00000560202 DIEXFQ68CQ4 756 aaKnown RBP15.73■□□□□ 0.11
USP3-218ENST00000560202 SCAF11Q99590 1463 aaKnown RBP15.73■□□□□ 0.11
USP3-218ENST00000560202 SETBP1Q9Y6X0 1596 aa15.72■□□□□ 0.11
USP3-218ENST00000560202 CEP170BQ9Y4F5 1589 aaPredicted RBP15.71■□□□□ 0.11
USP3-218ENST00000560202 ADGRB1O14514 1584 aa15.71■□□□□ 0.11
USP3-218ENST00000560202 TMEM132EQ6IEE7 984 aa15.7■□□□□ 0.1
USP3-218ENST00000560202 SLIT1O75093 1534 aa15.7■□□□□ 0.1
USP3-218ENST00000560202 ARHGAP23Q9P227 1491 aa15.7■□□□□ 0.1
USP3-218ENST00000560202 C11orf95C9JLR9 678 aaPredicted RBP15.7■□□□□ 0.1
USP3-218ENST00000560202 IQGAP1P46940 1657 aa15.69■□□□□ 0.1
USP3-218ENST00000560202 WASHC2AQ641Q2 1341 aa15.69■□□□□ 0.1
USP3-218ENST00000560202 LTKP29376 864 aa15.69■□□□□ 0.1
USP3-218ENST00000560202 TXNDC2Q86VQ3 553 aa15.69■□□□□ 0.1
USP3-218ENST00000560202 EID1Q9Y6B2 187 aa15.69■□□□□ 0.1
USP3-218ENST00000560202 KDM4FA0A1W2PPD8 638 aa15.68■□□□□ 0.1
USP3-218ENST00000560202 ALKQ9UM73 1620 aa15.68■□□□□ 0.1
USP3-218ENST00000560202 EIF3AQ14152 1382 aaKnown RBP15.68■□□□□ 0.1
USP3-218ENST00000560202 CCDC7Q96M83 1385 aa15.66■□□□□ 0.1
USP3-218ENST00000560202 PLEKHG1Q9ULL1 1385 aa15.66■□□□□ 0.1
USP3-218ENST00000560202 ZNF142P52746 1687 aaPredicted RBP15.66■□□□□ 0.1
USP3-218ENST00000560202 SETD1BQ9UPS6 1966 aaKnown RBP15.66■□□□□ 0.1
USP3-218ENST00000560202 DDX10Q13206 875 aaKnown RBP15.66■□□□□ 0.1
USP3-218ENST00000560202 TESK2Q96S53 571 aa15.66■□□□□ 0.1
USP3-218ENST00000560202 TRAK1Q9UPV9 953 aa15.66■□□□□ 0.1
USP3-218ENST00000560202 KIF7Q2M1P5 1343 aa15.65■□□□□ 0.1
USP3-218ENST00000560202 BCANQ96GW7 911 aa15.65■□□□□ 0.1
USP3-218ENST00000560202 ASXL1Q8IXJ9 1541 aa15.65■□□□□ 0.1
USP3-218ENST00000560202 NRXN3Q9Y4C0 1643 aa15.64■□□□□ 0.09
USP3-218ENST00000560202 YTHDC2Q9H6S0 1430 aaKnown RBP15.62■□□□□ 0.09
USP3-218ENST00000560202 STK26Q9P289 416 aa15.62■□□□□ 0.09
USP3-218ENST00000560202 ADAMTS13Q76LX8 1427 aa15.62■□□□□ 0.09
USP3-218ENST00000560202 TMF1P82094 1093 aa15.61■□□□□ 0.09
USP3-218ENST00000560202 ANKLE2Q86XL3 938 aa15.61■□□□□ 0.09
USP3-218ENST00000560202 CENPJQ9HC77 1338 aaPredicted RBP15.61■□□□□ 0.09
USP3-218ENST00000560202 METP08581 1390 aa15.61■□□□□ 0.09
USP3-218ENST00000560202 SETD1AO15047 1707 aaKnown RBP15.6■□□□□ 0.09
USP3-218ENST00000560202 SLC24A1O60721 1099 aa15.6■□□□□ 0.09
USP3-218ENST00000560202 LRPPRCP42704 1394 aaKnown RBP15.59■□□□□ 0.09
USP3-218ENST00000560202 DISP3Q9P2K9 1392 aa15.59■□□□□ 0.09
USP3-218ENST00000560202 POLR1AO95602 1720 aaPredicted RBP15.59■□□□□ 0.09
USP3-218ENST00000560202 POLR3GLQ9BT43 218 aa15.59■□□□□ 0.09
USP3-218ENST00000560202 MED14O60244 1454 aa15.59■□□□□ 0.09
USP3-218ENST00000560202 SLC26A8Q96RN1 970 aa15.58■□□□□ 0.08
USP3-218ENST00000560202 SBNO2Q9Y2G9 1366 aa15.58■□□□□ 0.08
USP3-218ENST00000560202 TBX22Q9Y458 520 aa15.57■□□□□ 0.08
USP3-218ENST00000560202 ABCC11Q96J66 1382 aa15.57■□□□□ 0.08
USP3-218ENST00000560202 ARHGEF28Q8N1W1 1705 aaKnown RBP15.56■□□□□ 0.08
USP3-218ENST00000560202 CDCA8Q53HL2 280 aa15.55■□□□□ 0.08
USP3-218ENST00000560202 PRAM1Q96QH2 718 aa15.55■□□□□ 0.08
USP3-218ENST00000560202 DLC1Q96QB1 1528 aa15.55■□□□□ 0.08
USP3-218ENST00000560202 POGKQ9P215 609 aa15.54■□□□□ 0.08
USP3-218ENST00000560202 DIP2AQ14689 1571 aa15.54■□□□□ 0.08
USP3-218ENST00000560202 SAFB2Q14151 953 aaKnown RBP eCLIP15.53■□□□□ 0.08
USP3-218ENST00000560202 SIRT1Q96EB6 747 aa15.53■□□□□ 0.08
USP3-218ENST00000560202 QRICH2Q9H0J4 1663 aa15.53■□□□□ 0.08
USP3-218ENST00000560202 TECPR2O15040 1411 aa15.52■□□□□ 0.08
USP3-218ENST00000560202 NPHP4O75161 1426 aaPredicted RBP15.51■□□□□ 0.07
USP3-218ENST00000560202 SCAF1Q9H7N4 1312 aaKnown RBP15.51■□□□□ 0.07
USP3-218ENST00000560202 NCKAP5LQ9HCH0 1330 aa15.51■□□□□ 0.07
USP3-218ENST00000560202 MIER1Q8N108 512 aa15.51■□□□□ 0.07
USP3-218ENST00000560202 PTPRUQ92729 1446 aa15.51■□□□□ 0.07
USP3-218ENST00000560202 WAPLQ7Z5K2 1190 aa15.51■□□□□ 0.07
USP3-218ENST00000560202 FAM135BQ49AJ0 1406 aa15.5■□□□□ 0.07
USP3-218ENST00000560202 PIK3R4Q99570 1358 aa15.49■□□□□ 0.07
USP3-218ENST00000560202 PLEKHH1Q9ULM0 1364 aa15.49■□□□□ 0.07
USP3-218ENST00000560202 EVC2Q86UK5 1308 aa15.49■□□□□ 0.07
USP3-218ENST00000560202 AMOTL2Q9Y2J4 779 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms