RNA–Protein interactions for RNA: ENST00000558314.5

TPM1-211, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-211ENST00000558314 KDM5AP29375 1690 aaKnown RBP23.69■■□□□ 1.38
TPM1-211ENST00000558314 UNC13BO14795 1591 aa23.69■■□□□ 1.38
TPM1-211ENST00000558314 KCNA6P17658 529 aa23.68■■□□□ 1.38
TPM1-211ENST00000558314 RIMS2Q9UQ26 1411 aa23.67■■□□□ 1.38
TPM1-211ENST00000558314 GCC2Q8IWJ2 1684 aa23.67■■□□□ 1.38
TPM1-211ENST00000558314 TMEM94Q12767 1356 aa23.66■■□□□ 1.38
TPM1-211ENST00000558314 HDGFP51858 240 aaKnown RBP23.65■■□□□ 1.38
TPM1-211ENST00000558314 PHF23Q9BUL5 403 aaPredicted RBP23.65■■□□□ 1.38
TPM1-211ENST00000558314 MED1Q15648 1581 aaPredicted RBP23.64■■□□□ 1.37
TPM1-211ENST00000558314 MYO5BQ9ULV0 1848 aa23.63■■□□□ 1.37
TPM1-211ENST00000558314 E9PCH4 1651 aa23.63■■□□□ 1.37
TPM1-211ENST00000558314 XIRP1Q702N8 1843 aaKnown RBP23.61■■□□□ 1.37
TPM1-211ENST00000558314 IQGAP3Q86VI3 1631 aa23.6■■□□□ 1.37
TPM1-211ENST00000558314 ZFYVE9O95405 1425 aa23.59■■□□□ 1.37
TPM1-211ENST00000558314 TMEM131LA2VDJ0 1609 aa23.59■■□□□ 1.37
TPM1-211ENST00000558314 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.59■■□□□ 1.37
TPM1-211ENST00000558314 PLEKHG1Q9ULL1 1385 aa23.59■■□□□ 1.37
TPM1-211ENST00000558314 C14orf37Q86TY3 774 aa23.56■■□□□ 1.36
TPM1-211ENST00000558314 ZNF326Q5BKZ1 582 aaKnown RBP23.54■■□□□ 1.36
TPM1-211ENST00000558314 MSH6P52701 1360 aa23.53■■□□□ 1.36
TPM1-211ENST00000558314 NKTRP30414 1462 aaKnown RBP23.53■■□□□ 1.36
TPM1-211ENST00000558314 TRIM52Q96A61 297 aa23.51■■□□□ 1.35
TPM1-211ENST00000558314 TBX22Q9Y458 520 aa23.51■■□□□ 1.35
TPM1-211ENST00000558314 NWD1Q149M9 1564 aa23.51■■□□□ 1.35
TPM1-211ENST00000558314 FAM135BQ49AJ0 1406 aa23.49■■□□□ 1.35
TPM1-211ENST00000558314 RRBP1Q9P2E9 1410 aaKnown RBP23.49■■□□□ 1.35
TPM1-211ENST00000558314 ADAMTS13Q76LX8 1427 aa23.46■■□□□ 1.35
TPM1-211ENST00000558314 SLAIN2Q9P270 581 aa23.46■■□□□ 1.35
TPM1-211ENST00000558314 ROBO1Q9Y6N7 1651 aa23.45■■□□□ 1.34
TPM1-211ENST00000558314 CHD2O14647 1828 aaKnown RBP23.45■■□□□ 1.34
TPM1-211ENST00000558314 NAIPQ13075 1403 aa23.43■■□□□ 1.34
TPM1-211ENST00000558314 SPHKAPQ2M3C7 1700 aa23.43■■□□□ 1.34
TPM1-211ENST00000558314 AMOTL2Q9Y2J4 779 aa23.43■■□□□ 1.34
TPM1-211ENST00000558314 DIP2AQ14689 1571 aa23.4■■□□□ 1.34
TPM1-211ENST00000558314 ATF3P18847 181 aa23.39■■□□□ 1.33
TPM1-211ENST00000558314 TRPM2O94759 1503 aa23.38■■□□□ 1.33
TPM1-211ENST00000558314 PIK3R4Q99570 1358 aa23.37■■□□□ 1.33
TPM1-211ENST00000558314 PTPRUQ92729 1446 aa23.36■■□□□ 1.33
TPM1-211ENST00000558314 SLC4A1APQ9BWU0 796 aaKnown RBP23.36■■□□□ 1.33
TPM1-211ENST00000558314 CLTCL1P53675 1640 aa23.36■■□□□ 1.33
TPM1-211ENST00000558314 C19orf44Q9H6X5 657 aa23.35■■□□□ 1.33
TPM1-211ENST00000558314 CADPS2Q86UW7 1296 aa23.34■■□□□ 1.33
TPM1-211ENST00000558314 PHLPP1O60346 1717 aa23.33■■□□□ 1.32
TPM1-211ENST00000558314 HFM1A2PYH4 1435 aa23.33■■□□□ 1.32
TPM1-211ENST00000558314 NCOA3Q9Y6Q9 1424 aa23.32■■□□□ 1.32
TPM1-211ENST00000558314 RGS17Q9UGC6 210 aaPredicted RBP23.31■■□□□ 1.32
TPM1-211ENST00000558314 METP08581 1390 aa23.3■■□□□ 1.32
TPM1-211ENST00000558314 FOXD1Q16676 465 aa23.3■■□□□ 1.32
TPM1-211ENST00000558314 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.3■■□□□ 1.32
TPM1-211ENST00000558314 NRXN3Q9Y4C0 1643 aa23.29■■□□□ 1.32
TPM1-211ENST00000558314 NEXMIFQ5QGS0 1516 aa23.28■■□□□ 1.32
TPM1-211ENST00000558314 JCADQ9P266 1359 aa23.27■■□□□ 1.32
TPM1-211ENST00000558314 SETBP1Q9Y6X0 1596 aa23.27■■□□□ 1.32
TPM1-211ENST00000558314 KIF1BO60333 1816 aa23.27■■□□□ 1.32
TPM1-211ENST00000558314 MEX3CQ5U5Q3 659 aaKnown RBP23.24■■□□□ 1.31
TPM1-211ENST00000558314 VGFO15240 615 aaPredicted RBP23.23■■□□□ 1.31
TPM1-211ENST00000558314 POTEAQ6S8J7 498 aa23.23■■□□□ 1.31
TPM1-211ENST00000558314 BRINP3Q76B58 766 aa23.23■■□□□ 1.31
TPM1-211ENST00000558314 XRN1Q8IZH2 1706 aaKnown RBP23.22■■□□□ 1.31
TPM1-211ENST00000558314 COL16A1Q07092 1604 aaPredicted RBP23.2■■□□□ 1.3
TPM1-211ENST00000558314 NUTM2BA6NNL0 878 aaPredicted RBP23.19■■□□□ 1.3
TPM1-211ENST00000558314 NUTM2EB1AL46 878 aaPredicted RBP23.19■■□□□ 1.3
TPM1-211ENST00000558314 RGL3Q3MIN7 710 aa23.19■■□□□ 1.3
TPM1-211ENST00000558314 NUTM2AQ8IVF1 878 aaPredicted RBP23.19■■□□□ 1.3
TPM1-211ENST00000558314 RPGRIP1LQ68CZ1 1315 aa23.16■■□□□ 1.3
TPM1-211ENST00000558314 DCCP43146 1447 aa23.16■■□□□ 1.3
TPM1-211ENST00000558314 DDX17Q92841 729 aaKnown RBP23.15■■□□□ 1.3
TPM1-211ENST00000558314 MPHOSPH9Q99550 1183 aa23.15■■□□□ 1.3
TPM1-211ENST00000558314 MST1RQ04912 1400 aa23.15■■□□□ 1.3
TPM1-211ENST00000558314 ADGRL3Q9HAR2 1447 aa23.15■■□□□ 1.3
TPM1-211ENST00000558314 AHDC1Q5TGY3 1603 aaPredicted RBP23.15■■□□□ 1.3
TPM1-211ENST00000558314 SPATA31A6Q5VVP1 1343 aa23.14■■□□□ 1.3
TPM1-211ENST00000558314 CCDC144AA2RUR9 1427 aa23.14■■□□□ 1.29
TPM1-211ENST00000558314 ASXL1Q8IXJ9 1541 aa23.13■■□□□ 1.29
TPM1-211ENST00000558314 LRP6O75581 1613 aa23.12■■□□□ 1.29
TPM1-211ENST00000558314 ROBO2Q9HCK4 1378 aa23.12■■□□□ 1.29
TPM1-211ENST00000558314 STK26Q9P289 416 aa23.1■■□□□ 1.29
TPM1-211ENST00000558314 NALCNQ8IZF0 1738 aa23.1■■□□□ 1.29
TPM1-211ENST00000558314 ADGRF5Q8IZF2 1346 aa23.08■■□□□ 1.29
TPM1-211ENST00000558314 PPLO60437 1756 aa23.08■■□□□ 1.29
TPM1-211ENST00000558314 PTCH1Q13635 1447 aa23.07■■□□□ 1.28
TPM1-211ENST00000558314 LRRC59Q96AG4 307 aaKnown RBP23.06■■□□□ 1.28
TPM1-211ENST00000558314 ZNF772Q68DY9 489 aaPredicted RBP23.05■■□□□ 1.28
TPM1-211ENST00000558314 ORAI2Q96SN7 254 aa23.05■■□□□ 1.28
TPM1-211ENST00000558314 SHPRHQ149N8 1683 aa23.05■■□□□ 1.28
TPM1-211ENST00000558314 SETD1AO15047 1707 aaKnown RBP23.05■■□□□ 1.28
TPM1-211ENST00000558314 C1orf167Q5SNV9 1468 aa23.04■■□□□ 1.28
TPM1-211ENST00000558314 SETD5Q9C0A6 1442 aa23.02■■□□□ 1.28
TPM1-211ENST00000558314 TMEM132EQ6IEE7 984 aa23.02■■□□□ 1.28
TPM1-211ENST00000558314 NUTM2FA1L443 756 aa23.01■■□□□ 1.27
TPM1-211ENST00000558314 NHSL1Q5SYE7 1610 aa23■■□□□ 1.27
TPM1-211ENST00000558314 C8orf37Q96NL8 207 aa23■■□□□ 1.27
TPM1-211ENST00000558314 ANKRD30BQ9BXX2 1392 aa23■■□□□ 1.27
TPM1-211ENST00000558314 SPATA31E1Q6ZUB1 1445 aa22.99■■□□□ 1.27
TPM1-211ENST00000558314 WAPLQ7Z5K2 1190 aa22.99■■□□□ 1.27
TPM1-211ENST00000558314 AFF2P51816 1311 aa22.99■■□□□ 1.27
TPM1-211ENST00000558314 ADAMTS2O95450 1211 aa22.98■■□□□ 1.27
TPM1-211ENST00000558314 ESCO1Q5FWF5 840 aa22.98■■□□□ 1.27
TPM1-211ENST00000558314 PNPLA6Q8IY17 1366 aa22.98■■□□□ 1.27
TPM1-211ENST00000558314 RXRBP28702 533 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms