RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 MARVELD3Q96A59 401 aa10.79□□□□□ -0.68
CKS1BP1-201ENST00000555221 CLK2P49760 499 aaKnown RBP10.78□□□□□ -0.68
CKS1BP1-201ENST00000555221 POTEEQ6S8J3 1075 aa10.78□□□□□ -0.68
CKS1BP1-201ENST00000555221 NUTM1Q86Y26 1132 aa10.78□□□□□ -0.68
CKS1BP1-201ENST00000555221 POLR3EQ9NVU0 708 aa10.78□□□□□ -0.68
CKS1BP1-201ENST00000555221 FAM205CA6NFA0 338 aa10.77□□□□□ -0.69
CKS1BP1-201ENST00000555221 HDGFP51858 240 aaKnown RBP10.77□□□□□ -0.69
CKS1BP1-201ENST00000555221 DMRTA1Q5VZB9 504 aa10.77□□□□□ -0.69
CKS1BP1-201ENST00000555221 SPIRE2Q8WWL2 714 aa10.77□□□□□ -0.69
CKS1BP1-201ENST00000555221 AXIN2Q9Y2T1 843 aa10.77□□□□□ -0.69
CKS1BP1-201ENST00000555221 SLC4A3P48751 1232 aa10.76□□□□□ -0.69
CKS1BP1-201ENST00000555221 RDH13Q8NBN7 331 aa10.76□□□□□ -0.69
CKS1BP1-201ENST00000555221 VPS9D1Q9Y2B5 631 aa10.76□□□□□ -0.69
CKS1BP1-201ENST00000555221 FAM98CQ17RN3 349 aaKnown RBP10.75□□□□□ -0.69
CKS1BP1-201ENST00000555221 PROCA1Q8NCQ7 364 aaPredicted RBP10.75□□□□□ -0.69
CKS1BP1-201ENST00000555221 FAM163AQ96GL9 167 aaPredicted RBP10.75□□□□□ -0.69
CKS1BP1-201ENST00000555221 NBPF3Q9H094 633 aa10.75□□□□□ -0.69
CKS1BP1-201ENST00000555221 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.74□□□□□ -0.69
CKS1BP1-201ENST00000555221 SEPT9Q9UHD8 586 aaPredicted RBP10.74□□□□□ -0.69
CKS1BP1-201ENST00000555221 LAPTM4BQ86VI4 370 aa10.73□□□□□ -0.69
CKS1BP1-201ENST00000555221 ZMYND15Q9H091 742 aa10.73□□□□□ -0.69
CKS1BP1-201ENST00000555221 TK2O00142 265 aa10.72□□□□□ -0.69
CKS1BP1-201ENST00000555221 SWT1Q5T5J6 900 aaKnown RBP10.72□□□□□ -0.69
CKS1BP1-201ENST00000555221 RIC3Q7Z5B4 369 aa10.72□□□□□ -0.69
CKS1BP1-201ENST00000555221 SPTLC1O15269 473 aa10.71□□□□□ -0.69
CKS1BP1-201ENST00000555221 GJA5P36382 358 aa10.71□□□□□ -0.69
CKS1BP1-201ENST00000555221 USP46P62068 366 aa10.71□□□□□ -0.69
CKS1BP1-201ENST00000555221 TUSC1Q2TAM9 212 aa10.71□□□□□ -0.69
CKS1BP1-201ENST00000555221 HS3ST6Q96QI5 342 aa10.71□□□□□ -0.69
CKS1BP1-201ENST00000555221 KDM4AO75164 1064 aa10.7□□□□□ -0.7
CKS1BP1-201ENST00000555221 GCGRP47871 477 aa10.69□□□□□ -0.7
CKS1BP1-201ENST00000555221 RSBN1LQ6PCB5 846 aaPredicted RBP10.69□□□□□ -0.7
CKS1BP1-201ENST00000555221 SLF2Q8IX21 1173 aa10.69□□□□□ -0.7
CKS1BP1-201ENST00000555221 LIMD1Q9UGP4 676 aa10.69□□□□□ -0.7
CKS1BP1-201ENST00000555221 MOXD2PA6NHM9 499 aa10.67□□□□□ -0.7
CKS1BP1-201ENST00000555221 BHMG1C9JSJ3 638 aaPredicted RBP10.66□□□□□ -0.7
CKS1BP1-201ENST00000555221 SLC10A3P09131 477 aa10.66□□□□□ -0.7
CKS1BP1-201ENST00000555221 PPP2R2DQ66LE6 453 aa10.66□□□□□ -0.7
CKS1BP1-201ENST00000555221 SAMD7Q7Z3H4 446 aa10.66□□□□□ -0.7
CKS1BP1-201ENST00000555221 MRPL50Q8N5N7 158 aaKnown RBP10.66□□□□□ -0.7
CKS1BP1-201ENST00000555221 RFC5P40937 340 aa10.65□□□□□ -0.7
CKS1BP1-201ENST00000555221 LSM11P83369 360 aaKnown RBP eCLIP10.65□□□□□ -0.7
CKS1BP1-201ENST00000555221 MCM6Q14566 821 aa10.65□□□□□ -0.7
CKS1BP1-201ENST00000555221 TMEM259Q4ZIN3 620 aa10.65□□□□□ -0.7
CKS1BP1-201ENST00000555221 BANK1Q8NDB2 785 aa10.65□□□□□ -0.7
CKS1BP1-201ENST00000555221 NECTIN2Q92692 538 aa10.65□□□□□ -0.7
CKS1BP1-201ENST00000555221 POTEB3A0JP26 581 aa10.64□□□□□ -0.71
CKS1BP1-201ENST00000555221 SUPT5HO00267 1087 aaKnown RBP10.64□□□□□ -0.71
CKS1BP1-201ENST00000555221 HOXA2O43364 376 aa10.64□□□□□ -0.71
CKS1BP1-201ENST00000555221 NDUFV2P19404 249 aa10.64□□□□□ -0.71
CKS1BP1-201ENST00000555221 ADGRD1Q6QNK2 874 aa10.64□□□□□ -0.71
CKS1BP1-201ENST00000555221 POTEBQ6S5H4 581 aa10.64□□□□□ -0.71
CKS1BP1-201ENST00000555221 ZFRQ96KR1 1074 aaKnown RBP10.64□□□□□ -0.71
CKS1BP1-201ENST00000555221 UBTFP17480 764 aaKnown RBP10.63□□□□□ -0.71
CKS1BP1-201ENST00000555221 GRIPAP1Q4V328 841 aa10.63□□□□□ -0.71
CKS1BP1-201ENST00000555221 CSPP1Q1MSJ5 1256 aa10.62□□□□□ -0.71
CKS1BP1-201ENST00000555221 PRPF38BQ5VTL8 546 aaKnown RBP10.62□□□□□ -0.71
CKS1BP1-201ENST00000555221 SPDYE5A6NIY4 337 aa10.61□□□□□ -0.71
CKS1BP1-201ENST00000555221 RNF40O75150 1001 aa10.61□□□□□ -0.71
CKS1BP1-201ENST00000555221 LILRB3O75022 631 aa10.6□□□□□ -0.71
CKS1BP1-201ENST00000555221 CFHP08603 1231 aa10.6□□□□□ -0.71
CKS1BP1-201ENST00000555221 FDX1P10109 184 aa10.6□□□□□ -0.71
CKS1BP1-201ENST00000555221 LRCH3Q96II8 777 aa10.6□□□□□ -0.71
CKS1BP1-201ENST00000555221 STAC3Q96MF2 364 aa10.6□□□□□ -0.71
CKS1BP1-201ENST00000555221 A6NJR5 290 aa10.59□□□□□ -0.71
CKS1BP1-201ENST00000555221 NUTM2BA6NNL0 878 aaPredicted RBP10.59□□□□□ -0.71
CKS1BP1-201ENST00000555221 NUTM2EB1AL46 878 aaPredicted RBP10.59□□□□□ -0.71
CKS1BP1-201ENST00000555221 KMT5BQ4FZB7 885 aa10.59□□□□□ -0.71
CKS1BP1-201ENST00000555221 LCE2DQ5TA82 110 aaPredicted RBP10.59□□□□□ -0.71
CKS1BP1-201ENST00000555221 NUTM2DQ5VT03 806 aaPredicted RBP10.59□□□□□ -0.71
CKS1BP1-201ENST00000555221 NUTM2AQ8IVF1 878 aaPredicted RBP10.59□□□□□ -0.71
CKS1BP1-201ENST00000555221 ZBTB3Q9H5J0 574 aa10.59□□□□□ -0.71
CKS1BP1-201ENST00000555221 PCDHB15Q9Y5E8 787 aa10.59□□□□□ -0.71
CKS1BP1-201ENST00000555221 QPCTQ16769 361 aa10.58□□□□□ -0.72
CKS1BP1-201ENST00000555221 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.58□□□□□ -0.72
CKS1BP1-201ENST00000555221 GOLGA8CPA6NN73 597 aa10.57□□□□□ -0.72
CKS1BP1-201ENST00000555221 HRO43593 1189 aa10.57□□□□□ -0.72
CKS1BP1-201ENST00000555221 RAD21O60216 631 aa10.57□□□□□ -0.72
CKS1BP1-201ENST00000555221 FBXO31Q5XUX0 539 aaPredicted RBP10.57□□□□□ -0.72
CKS1BP1-201ENST00000555221 ATP6V1AP38606 617 aa10.56□□□□□ -0.72
CKS1BP1-201ENST00000555221 FUT2Q10981 343 aa10.56□□□□□ -0.72
CKS1BP1-201ENST00000555221 ANKRD13DQ6ZTN6 518 aa10.56□□□□□ -0.72
CKS1BP1-201ENST00000555221 ANKK1Q8NFD2 765 aa10.56□□□□□ -0.72
CKS1BP1-201ENST00000555221 PRR14Q9BWN1 585 aa10.56□□□□□ -0.72
CKS1BP1-201ENST00000555221 APBB1O00213 710 aa10.55□□□□□ -0.72
CKS1BP1-201ENST00000555221 HRCP23327 699 aa10.55□□□□□ -0.72
CKS1BP1-201ENST00000555221 SOCS7O14512 581 aa10.54□□□□□ -0.72
CKS1BP1-201ENST00000555221 RTL5Q5HYW3 569 aaPredicted RBP10.54□□□□□ -0.72
CKS1BP1-201ENST00000555221 CABLES1Q8TDN4 633 aa10.54□□□□□ -0.72
CKS1BP1-201ENST00000555221 CLUAP1Q96AJ1 413 aa10.54□□□□□ -0.72
CKS1BP1-201ENST00000555221 AP1G2O75843 785 aa10.53□□□□□ -0.72
CKS1BP1-201ENST00000555221 MTMR2Q13614 643 aa10.53□□□□□ -0.72
CKS1BP1-201ENST00000555221 ARXQ96QS3 562 aa10.53□□□□□ -0.72
CKS1BP1-201ENST00000555221 SNRKQ9NRH2 765 aa10.53□□□□□ -0.72
CKS1BP1-201ENST00000555221 PCDHGC3Q9UN70 934 aa10.53□□□□□ -0.72
CKS1BP1-201ENST00000555221 ACTN4O43707 911 aaKnown RBP10.52□□□□□ -0.73
CKS1BP1-201ENST00000555221 GUCA2AQ02747 115 aa10.52□□□□□ -0.73
CKS1BP1-201ENST00000555221 HLA-CQ95604 372 aa10.52□□□□□ -0.73
CKS1BP1-201ENST00000555221 PRM3Q9NNZ6 103 aa10.51□□□□□ -0.73
CKS1BP1-201ENST00000555221 SOWAHBA6NEL2 793 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms