RNA–Protein interactions for RNA: ENST00000550013.1

RAB5C-205, Transcript of RAB5C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB5C, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5C-205ENST00000550013 PROSER2Q86WR7 435 aaPredicted RBP23.88■■□□□ 1.41
RAB5C-205ENST00000550013 FAM135BQ49AJ0 1406 aa23.87■■□□□ 1.41
RAB5C-205ENST00000550013 BCANQ96GW7 911 aa23.86■■□□□ 1.41
RAB5C-205ENST00000550013 UNC13BO14795 1591 aa23.86■■□□□ 1.41
RAB5C-205ENST00000550013 ZFYVE9O95405 1425 aa23.85■■□□□ 1.41
RAB5C-205ENST00000550013 NKTRP30414 1462 aaKnown RBP23.85■■□□□ 1.41
RAB5C-205ENST00000550013 ROBO1Q9Y6N7 1651 aa23.85■■□□□ 1.41
RAB5C-205ENST00000550013 TMEM131LA2VDJ0 1609 aa23.84■■□□□ 1.41
RAB5C-205ENST00000550013 RIMS2Q9UQ26 1411 aa23.83■■□□□ 1.4
RAB5C-205ENST00000550013 PLEKHG1Q9ULL1 1385 aa23.81■■□□□ 1.4
RAB5C-205ENST00000550013 E9PCH4 1651 aa23.81■■□□□ 1.4
RAB5C-205ENST00000550013 RGS17Q9UGC6 210 aaPredicted RBP23.81■■□□□ 1.4
RAB5C-205ENST00000550013 CHD2O14647 1828 aaKnown RBP23.81■■□□□ 1.4
RAB5C-205ENST00000550013 PPP1R15AO75807 674 aaPredicted RBP23.79■■□□□ 1.4
RAB5C-205ENST00000550013 MSH6P52701 1360 aa23.77■■□□□ 1.4
RAB5C-205ENST00000550013 CHGAP10645 457 aaKnown RBP23.76■■□□□ 1.39
RAB5C-205ENST00000550013 IQGAP3Q86VI3 1631 aa23.76■■□□□ 1.39
RAB5C-205ENST00000550013 ROCK1Q13464 1354 aa23.76■■□□□ 1.39
RAB5C-205ENST00000550013 HDGFP51858 240 aaKnown RBP23.73■■□□□ 1.39
RAB5C-205ENST00000550013 NUTM2DQ5VT03 806 aaPredicted RBP23.73■■□□□ 1.39
RAB5C-205ENST00000550013 PHLPP1O60346 1717 aa23.71■■□□□ 1.39
RAB5C-205ENST00000550013 SLAIN2Q9P270 581 aa23.71■■□□□ 1.39
RAB5C-205ENST00000550013 TBX22Q9Y458 520 aa23.71■■□□□ 1.39
RAB5C-205ENST00000550013 ADAMTS13Q76LX8 1427 aa23.7■■□□□ 1.38
RAB5C-205ENST00000550013 ITGAEP38570 1179 aa23.7■■□□□ 1.38
RAB5C-205ENST00000550013 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.7■■□□□ 1.38
RAB5C-205ENST00000550013 NUP155O75694 1391 aa23.68■■□□□ 1.38
RAB5C-205ENST00000550013 DIP2AQ14689 1571 aa23.67■■□□□ 1.38
RAB5C-205ENST00000550013 POTEAQ6S8J7 498 aa23.67■■□□□ 1.38
RAB5C-205ENST00000550013 PPARGC1BQ86YN6 1023 aaKnown RBP23.66■■□□□ 1.38
RAB5C-205ENST00000550013 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.64■■□□□ 1.37
RAB5C-205ENST00000550013 C14orf37Q86TY3 774 aa23.63■■□□□ 1.37
RAB5C-205ENST00000550013 NCOA3Q9Y6Q9 1424 aa23.63■■□□□ 1.37
RAB5C-205ENST00000550013 COL16A1Q07092 1604 aaPredicted RBP23.62■■□□□ 1.37
RAB5C-205ENST00000550013 TRPM2O94759 1503 aa23.61■■□□□ 1.37
RAB5C-205ENST00000550013 PIK3R4Q99570 1358 aa23.61■■□□□ 1.37
RAB5C-205ENST00000550013 JCADQ9P266 1359 aa23.61■■□□□ 1.37
RAB5C-205ENST00000550013 PTPRUQ92729 1446 aa23.6■■□□□ 1.37
RAB5C-205ENST00000550013 SPHKAPQ2M3C7 1700 aa23.6■■□□□ 1.37
RAB5C-205ENST00000550013 AMOTL2Q9Y2J4 779 aa23.57■■□□□ 1.36
RAB5C-205ENST00000550013 NRXN3Q9Y4C0 1643 aa23.57■■□□□ 1.36
RAB5C-205ENST00000550013 C19orf44Q9H6X5 657 aa23.56■■□□□ 1.36
RAB5C-205ENST00000550013 ATF3P18847 181 aa23.55■■□□□ 1.36
RAB5C-205ENST00000550013 CADPS2Q86UW7 1296 aa23.55■■□□□ 1.36
RAB5C-205ENST00000550013 AHDC1Q5TGY3 1603 aaPredicted RBP23.54■■□□□ 1.36
RAB5C-205ENST00000550013 XRN1Q8IZH2 1706 aaKnown RBP23.53■■□□□ 1.36
RAB5C-205ENST00000550013 SETBP1Q9Y6X0 1596 aa23.53■■□□□ 1.36
RAB5C-205ENST00000550013 LRP6O75581 1613 aa23.53■■□□□ 1.36
RAB5C-205ENST00000550013 SETD1AO15047 1707 aaKnown RBP23.53■■□□□ 1.36
RAB5C-205ENST00000550013 ZNF326Q5BKZ1 582 aaKnown RBP23.51■■□□□ 1.35
RAB5C-205ENST00000550013 CLTCL1P53675 1640 aa23.5■■□□□ 1.35
RAB5C-205ENST00000550013 SHPRHQ149N8 1683 aa23.49■■□□□ 1.35
RAB5C-205ENST00000550013 BRINP3Q76B58 766 aa23.48■■□□□ 1.35
RAB5C-205ENST00000550013 METP08581 1390 aa23.48■■□□□ 1.35
RAB5C-205ENST00000550013 SPATA31A6Q5VVP1 1343 aa23.47■■□□□ 1.35
RAB5C-205ENST00000550013 DCCP43146 1447 aa23.46■■□□□ 1.35
RAB5C-205ENST00000550013 NEXMIFQ5QGS0 1516 aa23.46■■□□□ 1.35
RAB5C-205ENST00000550013 MEX3CQ5U5Q3 659 aaKnown RBP23.44■■□□□ 1.34
RAB5C-205ENST00000550013 ASXL1Q8IXJ9 1541 aa23.43■■□□□ 1.34
RAB5C-205ENST00000550013 RRBP1Q9P2E9 1410 aaKnown RBP23.43■■□□□ 1.34
RAB5C-205ENST00000550013 KIF1BO60333 1816 aa23.43■■□□□ 1.34
RAB5C-205ENST00000550013 MST1RQ04912 1400 aa23.42■■□□□ 1.34
RAB5C-205ENST00000550013 NAIPQ13075 1403 aa23.42■■□□□ 1.34
RAB5C-205ENST00000550013 NALCNQ8IZF0 1738 aa23.4■■□□□ 1.34
RAB5C-205ENST00000550013 NHSL1Q5SYE7 1610 aa23.4■■□□□ 1.34
RAB5C-205ENST00000550013 NUTM2BA6NNL0 878 aaPredicted RBP23.38■■□□□ 1.33
RAB5C-205ENST00000550013 NUTM2EB1AL46 878 aaPredicted RBP23.38■■□□□ 1.33
RAB5C-205ENST00000550013 NUTM2AQ8IVF1 878 aaPredicted RBP23.38■■□□□ 1.33
RAB5C-205ENST00000550013 ADGRL3Q9HAR2 1447 aa23.38■■□□□ 1.33
RAB5C-205ENST00000550013 ZNF772Q68DY9 489 aaPredicted RBP23.36■■□□□ 1.33
RAB5C-205ENST00000550013 SETD5Q9C0A6 1442 aa23.35■■□□□ 1.33
RAB5C-205ENST00000550013 DDX17Q92841 729 aaKnown RBP23.34■■□□□ 1.33
RAB5C-205ENST00000550013 TRIM52Q96A61 297 aa23.34■■□□□ 1.33
RAB5C-205ENST00000550013 HFM1A2PYH4 1435 aa23.3■■□□□ 1.32
RAB5C-205ENST00000550013 LRRC59Q96AG4 307 aaKnown RBP23.29■■□□□ 1.32
RAB5C-205ENST00000550013 AFF2P51816 1311 aa23.29■■□□□ 1.32
RAB5C-205ENST00000550013 ROBO2Q9HCK4 1378 aa23.28■■□□□ 1.32
RAB5C-205ENST00000550013 PTCH1Q13635 1447 aa23.28■■□□□ 1.32
RAB5C-205ENST00000550013 C1orf167Q5SNV9 1468 aa23.28■■□□□ 1.32
RAB5C-205ENST00000550013 PNPLA6Q8IY17 1366 aa23.27■■□□□ 1.32
RAB5C-205ENST00000550013 PPLO60437 1756 aa23.27■■□□□ 1.32
RAB5C-205ENST00000550013 VGFO15240 615 aaPredicted RBP23.27■■□□□ 1.32
RAB5C-205ENST00000550013 RXRBP28702 533 aa23.27■■□□□ 1.32
RAB5C-205ENST00000550013 SLC4A1APQ9BWU0 796 aaKnown RBP23.26■■□□□ 1.31
RAB5C-205ENST00000550013 UPF1Q92900 1129 aaKnown RBP eCLIP23.25■■□□□ 1.31
RAB5C-205ENST00000550013 LAMC1P11047 1609 aa23.23■■□□□ 1.31
RAB5C-205ENST00000550013 C8orf37Q96NL8 207 aa23.23■■□□□ 1.31
RAB5C-205ENST00000550013 RPGRIP1LQ68CZ1 1315 aa23.23■■□□□ 1.31
RAB5C-205ENST00000550013 PRAG1Q86YV5 1406 aa23.22■■□□□ 1.31
RAB5C-205ENST00000550013 ORAI2Q96SN7 254 aa23.21■■□□□ 1.31
RAB5C-205ENST00000550013 CDK12Q9NYV4 1490 aaPredicted RBP23.21■■□□□ 1.31
RAB5C-205ENST00000550013 FOXD1Q16676 465 aa23.2■■□□□ 1.3
RAB5C-205ENST00000550013 SOS2Q07890 1332 aaPredicted RBP23.16■■□□□ 1.3
RAB5C-205ENST00000550013 ADAMTS2O95450 1211 aa23.16■■□□□ 1.3
RAB5C-205ENST00000550013 RGS12O14924 1447 aa23.16■■□□□ 1.3
RAB5C-205ENST00000550013 QTRT2Q9H974 415 aaKnown RBP23.15■■□□□ 1.3
RAB5C-205ENST00000550013 ADGRF5Q8IZF2 1346 aa23.14■■□□□ 1.3
RAB5C-205ENST00000550013 NGLY1Q96IV0 654 aa23.13■■□□□ 1.29
RAB5C-205ENST00000550013 RBM6P78332 1123 aaKnown RBP23.12■■□□□ 1.29
RAB5C-205ENST00000550013 CDC42BPGQ6DT37 1551 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms