RNA–Protein interactions for RNA: ENST00000546974.1

COL2A1-209, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL2A1, Length 703 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-209ENST00000546974 RRBP1Q9P2E9 1410 aaKnown RBP21.91■■□□□ 1.1
COL2A1-209ENST00000546974 KCNA6P17658 529 aa21.91■■□□□ 1.1
COL2A1-209ENST00000546974 SLC26A8Q96RN1 970 aa21.91■■□□□ 1.1
COL2A1-209ENST00000546974 ILDR2Q71H61 639 aa21.9■■□□□ 1.1
COL2A1-209ENST00000546974 RIMS2Q9UQ26 1411 aa21.89■■□□□ 1.09
COL2A1-209ENST00000546974 PLEKHG1Q9ULL1 1385 aa21.87■■□□□ 1.09
COL2A1-209ENST00000546974 BCANQ96GW7 911 aa21.87■■□□□ 1.09
COL2A1-209ENST00000546974 CHGAP10645 457 aaKnown RBP21.86■■□□□ 1.09
COL2A1-209ENST00000546974 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.86■■□□□ 1.09
COL2A1-209ENST00000546974 PPP1R15AO75807 674 aaPredicted RBP21.85■■□□□ 1.09
COL2A1-209ENST00000546974 NWD1Q149M9 1564 aa21.84■■□□□ 1.09
COL2A1-209ENST00000546974 TMEM94Q12767 1356 aa21.84■■□□□ 1.09
COL2A1-209ENST00000546974 PROSER2Q86WR7 435 aaPredicted RBP21.83■■□□□ 1.09
COL2A1-209ENST00000546974 NKTRP30414 1462 aaKnown RBP21.83■■□□□ 1.08
COL2A1-209ENST00000546974 CHD2O14647 1828 aaKnown RBP21.82■■□□□ 1.08
COL2A1-209ENST00000546974 TBX22Q9Y458 520 aa21.81■■□□□ 1.08
COL2A1-209ENST00000546974 NAIPQ13075 1403 aa21.8■■□□□ 1.08
COL2A1-209ENST00000546974 SPHKAPQ2M3C7 1700 aa21.8■■□□□ 1.08
COL2A1-209ENST00000546974 SENP3Q9H4L4 574 aaPredicted RBP21.79■■□□□ 1.08
COL2A1-209ENST00000546974 MED1Q15648 1581 aaPredicted RBP21.78■■□□□ 1.08
COL2A1-209ENST00000546974 FAM135BQ49AJ0 1406 aa21.77■■□□□ 1.08
COL2A1-209ENST00000546974 SOCS7O14512 581 aa21.76■■□□□ 1.07
COL2A1-209ENST00000546974 NUTM2DQ5VT03 806 aaPredicted RBP21.76■■□□□ 1.07
COL2A1-209ENST00000546974 RBM33Q96EV2 1170 aaKnown RBP21.76■■□□□ 1.07
COL2A1-209ENST00000546974 DIP2AQ14689 1571 aa21.75■■□□□ 1.07
COL2A1-209ENST00000546974 ADAMTS13Q76LX8 1427 aa21.75■■□□□ 1.07
COL2A1-209ENST00000546974 MSH6P52701 1360 aa21.73■■□□□ 1.07
COL2A1-209ENST00000546974 PIK3R4Q99570 1358 aa21.73■■□□□ 1.07
COL2A1-209ENST00000546974 HFM1A2PYH4 1435 aa21.72■■□□□ 1.07
COL2A1-209ENST00000546974 NCOA3Q9Y6Q9 1424 aa21.71■■□□□ 1.07
COL2A1-209ENST00000546974 TRPM2O94759 1503 aa21.69■■□□□ 1.06
COL2A1-209ENST00000546974 ROBO1Q9Y6N7 1651 aa21.69■■□□□ 1.06
COL2A1-209ENST00000546974 ZNF326Q5BKZ1 582 aaKnown RBP21.68■■□□□ 1.06
COL2A1-209ENST00000546974 CLTCL1P53675 1640 aa21.68■■□□□ 1.06
COL2A1-209ENST00000546974 TRIM52Q96A61 297 aa21.67■■□□□ 1.06
COL2A1-209ENST00000546974 KIF1BO60333 1816 aa21.66■■□□□ 1.06
COL2A1-209ENST00000546974 SLAIN2Q9P270 581 aa21.66■■□□□ 1.06
COL2A1-209ENST00000546974 SETBP1Q9Y6X0 1596 aa21.65■■□□□ 1.06
COL2A1-209ENST00000546974 NRXN3Q9Y4C0 1643 aa21.65■■□□□ 1.06
COL2A1-209ENST00000546974 PHF23Q9BUL5 403 aaPredicted RBP21.64■■□□□ 1.05
COL2A1-209ENST00000546974 AMOTL2Q9Y2J4 779 aa21.64■■□□□ 1.05
COL2A1-209ENST00000546974 PTPRUQ92729 1446 aa21.63■■□□□ 1.05
COL2A1-209ENST00000546974 SLC4A1APQ9BWU0 796 aaKnown RBP21.62■■□□□ 1.05
COL2A1-209ENST00000546974 NEXMIFQ5QGS0 1516 aa21.61■■□□□ 1.05
COL2A1-209ENST00000546974 C14orf37Q86TY3 774 aa21.61■■□□□ 1.05
COL2A1-209ENST00000546974 C19orf44Q9H6X5 657 aa21.61■■□□□ 1.05
COL2A1-209ENST00000546974 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.6■■□□□ 1.05
COL2A1-209ENST00000546974 XRN1Q8IZH2 1706 aaKnown RBP21.58■■□□□ 1.05
COL2A1-209ENST00000546974 CADPS2Q86UW7 1296 aa21.58■■□□□ 1.05
COL2A1-209ENST00000546974 ATF3P18847 181 aa21.57■■□□□ 1.04
COL2A1-209ENST00000546974 PHLPP1O60346 1717 aa21.57■■□□□ 1.04
COL2A1-209ENST00000546974 METP08581 1390 aa21.56■■□□□ 1.04
COL2A1-209ENST00000546974 VGFO15240 615 aaPredicted RBP21.54■■□□□ 1.04
COL2A1-209ENST00000546974 RPGRIP1LQ68CZ1 1315 aa21.54■■□□□ 1.04
COL2A1-209ENST00000546974 DCCP43146 1447 aa21.52■■□□□ 1.04
COL2A1-209ENST00000546974 RGS17Q9UGC6 210 aaPredicted RBP21.5■■□□□ 1.03
COL2A1-209ENST00000546974 JCADQ9P266 1359 aa21.49■■□□□ 1.03
COL2A1-209ENST00000546974 PPLO60437 1756 aa21.49■■□□□ 1.03
COL2A1-209ENST00000546974 COL16A1Q07092 1604 aaPredicted RBP21.49■■□□□ 1.03
COL2A1-209ENST00000546974 FOXD1Q16676 465 aa21.49■■□□□ 1.03
COL2A1-209ENST00000546974 MPHOSPH9Q99550 1183 aa21.48■■□□□ 1.03
COL2A1-209ENST00000546974 ACIN1Q9UKV3 1341 aaKnown RBP21.48■■□□□ 1.03
COL2A1-209ENST00000546974 AHDC1Q5TGY3 1603 aaPredicted RBP21.47■■□□□ 1.03
COL2A1-209ENST00000546974 SETD1AO15047 1707 aaKnown RBP21.47■■□□□ 1.03
COL2A1-209ENST00000546974 BRINP3Q76B58 766 aa21.45■■□□□ 1.02
COL2A1-209ENST00000546974 CCDC144AA2RUR9 1427 aa21.45■■□□□ 1.02
COL2A1-209ENST00000546974 ADGRL3Q9HAR2 1447 aa21.45■■□□□ 1.02
COL2A1-209ENST00000546974 MST1RQ04912 1400 aa21.43■■□□□ 1.02
COL2A1-209ENST00000546974 PTCH1Q13635 1447 aa21.42■■□□□ 1.02
COL2A1-209ENST00000546974 NALCNQ8IZF0 1738 aa21.41■■□□□ 1.02
COL2A1-209ENST00000546974 PRAG1Q86YV5 1406 aa21.41■■□□□ 1.02
COL2A1-209ENST00000546974 SETD5Q9C0A6 1442 aa21.41■■□□□ 1.02
COL2A1-209ENST00000546974 SPATA31E1Q6ZUB1 1445 aa21.4■■□□□ 1.02
COL2A1-209ENST00000546974 SPATA31A6Q5VVP1 1343 aa21.4■■□□□ 1.02
COL2A1-209ENST00000546974 ASXL1Q8IXJ9 1541 aa21.39■■□□□ 1.02
COL2A1-209ENST00000546974 SHPRHQ149N8 1683 aa21.39■■□□□ 1.01
COL2A1-209ENST00000546974 ROBO2Q9HCK4 1378 aa21.38■■□□□ 1.01
COL2A1-209ENST00000546974 RGL3Q3MIN7 710 aa21.38■■□□□ 1.01
COL2A1-209ENST00000546974 POTEAQ6S8J7 498 aa21.37■■□□□ 1.01
COL2A1-209ENST00000546974 IFT172Q9UG01 1749 aa21.37■■□□□ 1.01
COL2A1-209ENST00000546974 NHSL1Q5SYE7 1610 aa21.37■■□□□ 1.01
COL2A1-209ENST00000546974 ANKRD30BQ9BXX2 1392 aa21.36■■□□□ 1.01
COL2A1-209ENST00000546974 ADGRF5Q8IZF2 1346 aa21.36■■□□□ 1.01
COL2A1-209ENST00000546974 LRP6O75581 1613 aa21.33■■□□□ 1.01
COL2A1-209ENST00000546974 C1orf167Q5SNV9 1468 aa21.32■■□□□ 1
COL2A1-209ENST00000546974 LRRC59Q96AG4 307 aaKnown RBP21.31■■□□□ 1
COL2A1-209ENST00000546974 RAB3GAP2Q9H2M9 1393 aa21.31■■□□□ 1
COL2A1-209ENST00000546974 MEX3CQ5U5Q3 659 aaKnown RBP21.3■■□□□ 1
COL2A1-209ENST00000546974 PIK3C2GO75747 1445 aa21.29■■□□□ 1
COL2A1-209ENST00000546974 DDX17Q92841 729 aaKnown RBP21.28■■□□□ 1
COL2A1-209ENST00000546974 TECPR2O15040 1411 aa21.28■■□□□ 1
COL2A1-209ENST00000546974 LRPPRCP42704 1394 aaKnown RBP21.27■■□□□ 1
COL2A1-209ENST00000546974 LAMC1P11047 1609 aa21.27■■□□□ 1
COL2A1-209ENST00000546974 ABCC11Q96J66 1382 aa21.26■□□□□ 0.99
COL2A1-209ENST00000546974 ZNF772Q68DY9 489 aaPredicted RBP21.26■□□□□ 0.99
COL2A1-209ENST00000546974 KNDC1Q76NI1 1749 aa21.25■□□□□ 0.99
COL2A1-209ENST00000546974 ORAI2Q96SN7 254 aa21.25■□□□□ 0.99
COL2A1-209ENST00000546974 NUTM2BA6NNL0 878 aaPredicted RBP21.24■□□□□ 0.99
COL2A1-209ENST00000546974 NUTM2EB1AL46 878 aaPredicted RBP21.24■□□□□ 0.99
COL2A1-209ENST00000546974 TMEM132EQ6IEE7 984 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms