RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	STAC3	Q96MF2	364 aa		11.68	□□□□□ -0.54
LEMD3-205	ENST00000544506	DAXX	Q9UER7	740 aa	Predicted RBP	11.68	□□□□□ -0.54
LEMD3-205	ENST00000544506	SWT1	Q5T5J6	900 aa	Known RBP	11.67	□□□□□ -0.54
LEMD3-205	ENST00000544506	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.66	□□□□□ -0.54
LEMD3-205	ENST00000544506	MS4A1	P11836	297 aa		11.65	□□□□□ -0.54
LEMD3-205	ENST00000544506	SAMD7	Q7Z3H4	446 aa		11.65	□□□□□ -0.54
LEMD3-205	ENST00000544506	GOLGA8CP	A6NN73	597 aa		11.63	□□□□□ -0.55
LEMD3-205	ENST00000544506	SSTR3	P32745	418 aa	Predicted RBP	11.63	□□□□□ -0.55
LEMD3-205	ENST00000544506	HDGF	P51858	240 aa	Known RBP	11.62	□□□□□ -0.55
LEMD3-205	ENST00000544506	PCDH10	Q9P2E7	1040 aa		11.62	□□□□□ -0.55
LEMD3-205	ENST00000544506	DDX11L8	A8MPP1	907 aa		11.61	□□□□□ -0.55
LEMD3-205	ENST00000544506	SULF1	Q8IWU6	871 aa		11.6	□□□□□ -0.55
LEMD3-205	ENST00000544506	ANKK1	Q8NFD2	765 aa		11.6	□□□□□ -0.55
LEMD3-205	ENST00000544506	LRCH3	Q96II8	777 aa		11.6	□□□□□ -0.55
LEMD3-205	ENST00000544506	FAM117A	Q9C073	453 aa		11.6	□□□□□ -0.55
LEMD3-205	ENST00000544506	RNF40	O75150	1001 aa		11.59	□□□□□ -0.55
LEMD3-205	ENST00000544506	SLF2	Q8IX21	1173 aa		11.59	□□□□□ -0.55
LEMD3-205	ENST00000544506	WNT2B	Q93097	391 aa		11.59	□□□□□ -0.55
LEMD3-205	ENST00000544506	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.59	□□□□□ -0.55
LEMD3-205	ENST00000544506	CD46	P15529	392 aa		11.58	□□□□□ -0.56
LEMD3-205	ENST00000544506	SLC10A3	P09131	477 aa		11.57	□□□□□ -0.56
LEMD3-205	ENST00000544506	SLC4A3	P48751	1232 aa		11.57	□□□□□ -0.56
LEMD3-205	ENST00000544506	BCAM	P50895	628 aa		11.57	□□□□□ -0.56
LEMD3-205	ENST00000544506	RDH13	Q8NBN7	331 aa		11.57	□□□□□ -0.56
LEMD3-205	ENST00000544506	SOWAHB	A6NEL2	793 aa		11.56	□□□□□ -0.56
LEMD3-205	ENST00000544506	DDRGK1	Q96HY6	314 aa		11.56	□□□□□ -0.56
LEMD3-205	ENST00000544506	BEGAIN	Q9BUH8	593 aa		11.56	□□□□□ -0.56
LEMD3-205	ENST00000544506	PLEKHG3	A1L390	1219 aa		11.55	□□□□□ -0.56
LEMD3-205	ENST00000544506	IL27	Q8NEV9	243 aa		11.55	□□□□□ -0.56
LEMD3-205	ENST00000544506	KCTD12	Q96CX2	325 aa	Known RBP	11.54	□□□□□ -0.56
LEMD3-205	ENST00000544506	RSPH4A	Q5TD94	716 aa		11.52	□□□□□ -0.57
LEMD3-205	ENST00000544506	THSD4	Q6ZMP0	1018 aa		11.52	□□□□□ -0.57
LEMD3-205	ENST00000544506	MYT1L	Q9UL68	1186 aa		11.52	□□□□□ -0.57
LEMD3-205	ENST00000544506	HPS5	Q9UPZ3	1129 aa		11.52	□□□□□ -0.57
LEMD3-205	ENST00000544506	CFH	P08603	1231 aa		11.5	□□□□□ -0.57
LEMD3-205	ENST00000544506	SPNS2	Q8IVW8	549 aa		11.5	□□□□□ -0.57
LEMD3-205	ENST00000544506	TSR3	Q9UJK0	312 aa	Known RBP	11.5	□□□□□ -0.57
LEMD3-205	ENST00000544506	GCGR	P47871	477 aa		11.49	□□□□□ -0.57
LEMD3-205	ENST00000544506	TMEM132A	Q24JP5	1023 aa		11.49	□□□□□ -0.57
LEMD3-205	ENST00000544506	NECTIN2	Q92692	538 aa		11.49	□□□□□ -0.57
LEMD3-205	ENST00000544506	PPP4C	P60510	307 aa		11.48	□□□□□ -0.57
LEMD3-205	ENST00000544506	SPIRE2	Q8WWL2	714 aa		11.46	□□□□□ -0.57
LEMD3-205	ENST00000544506	TBC1D2	Q9BYX2	928 aa		11.46	□□□□□ -0.57
LEMD3-205	ENST00000544506	WBP1L	Q9NX94	342 aa		11.46	□□□□□ -0.57
LEMD3-205	ENST00000544506	KDM4A	O75164	1064 aa		11.45	□□□□□ -0.58
LEMD3-205	ENST00000544506	KMT5B	Q4FZB7	885 aa		11.45	□□□□□ -0.58
LEMD3-205	ENST00000544506	NUTM1	Q86Y26	1132 aa		11.45	□□□□□ -0.58
LEMD3-205	ENST00000544506	APLP1	P51693	650 aa		11.43	□□□□□ -0.58
LEMD3-205	ENST00000544506	PTPN5	P54829	565 aa		11.43	□□□□□ -0.58
LEMD3-205	ENST00000544506	DIXDC1	Q155Q3	683 aa		11.43	□□□□□ -0.58
LEMD3-205	ENST00000544506	SH3D19	Q5HYK7	790 aa		11.43	□□□□□ -0.58
LEMD3-205	ENST00000544506	MYSM1	Q5VVJ2	828 aa		11.43	□□□□□ -0.58
LEMD3-205	ENST00000544506	RNF166	Q96A37	237 aa	Predicted RBP	11.43	□□□□□ -0.58
LEMD3-205	ENST00000544506	FUT2	Q10981	343 aa		11.42	□□□□□ -0.58
LEMD3-205	ENST00000544506	RSPH6A	Q9H0K4	717 aa		11.42	□□□□□ -0.58
LEMD3-205	ENST00000544506	ACTN4	O43707	911 aa	Known RBP	11.41	□□□□□ -0.58
LEMD3-205	ENST00000544506	PRR14	Q9BWN1	585 aa		11.41	□□□□□ -0.58
LEMD3-205	ENST00000544506	HOXA2	O43364	376 aa		11.4	□□□□□ -0.58
LEMD3-205	ENST00000544506	USP46	P62068	366 aa		11.4	□□□□□ -0.58
LEMD3-205	ENST00000544506	MOXD2P	A6NHM9	499 aa		11.39	□□□□□ -0.59
LEMD3-205	ENST00000544506	GOPC	Q9HD26	462 aa		11.39	□□□□□ -0.59
LEMD3-205	ENST00000544506	HLA-C	Q95604	372 aa		11.38	□□□□□ -0.59
LEMD3-205	ENST00000544506	POLR3E	Q9NVU0	708 aa		11.38	□□□□□ -0.59
LEMD3-205	ENST00000544506	NDUFV2	P19404	249 aa		11.37	□□□□□ -0.59
LEMD3-205	ENST00000544506	CLK2	P49760	499 aa	Known RBP	11.37	□□□□□ -0.59
LEMD3-205	ENST00000544506	SKIV2L	Q15477	1246 aa	Known RBP	11.37	□□□□□ -0.59
LEMD3-205	ENST00000544506	ATP6V1A	P38606	617 aa		11.36	□□□□□ -0.59
LEMD3-205	ENST00000544506	MMRN1	Q13201	1228 aa		11.36	□□□□□ -0.59
LEMD3-205	ENST00000544506	PUS10	Q3MIT2	529 aa	Known RBP	11.36	□□□□□ -0.59
LEMD3-205	ENST00000544506	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.36	□□□□□ -0.59
LEMD3-205	ENST00000544506	NYAP1	Q6ZVC0	841 aa		11.36	□□□□□ -0.59
LEMD3-205	ENST00000544506	RIC3	Q7Z5B4	369 aa		11.36	□□□□□ -0.59
LEMD3-205	ENST00000544506	LIMD1	Q9UGP4	676 aa		11.36	□□□□□ -0.59
LEMD3-205	ENST00000544506	SPTLC1	O15269	473 aa		11.35	□□□□□ -0.59
LEMD3-205	ENST00000544506	GUCA2A	Q02747	115 aa		11.35	□□□□□ -0.59
LEMD3-205	ENST00000544506	GRIPAP1	Q4V328	841 aa		11.35	□□□□□ -0.59
LEMD3-205	ENST00000544506	PCDHB3	Q9Y5E6	796 aa		11.35	□□□□□ -0.59
LEMD3-205	ENST00000544506	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.34	□□□□□ -0.59
LEMD3-205	ENST00000544506	FDX1	P10109	184 aa		11.33	□□□□□ -0.6
LEMD3-205	ENST00000544506	MORN1	Q5T089	497 aa		11.33	□□□□□ -0.6
LEMD3-205	ENST00000544506	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.33	□□□□□ -0.6
LEMD3-205	ENST00000544506	GJA5	P36382	358 aa		11.32	□□□□□ -0.6
LEMD3-205	ENST00000544506	HCST	Q9UBK5	93 aa		11.32	□□□□□ -0.6
LEMD3-205	ENST00000544506	CSPP1	Q1MSJ5	1256 aa		11.31	□□□□□ -0.6
LEMD3-205	ENST00000544506	BLOC1S3	Q6QNY0	202 aa		11.31	□□□□□ -0.6
LEMD3-205	ENST00000544506	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.31	□□□□□ -0.6
LEMD3-205	ENST00000544506	PCDHGC3	Q9UN70	934 aa		11.31	□□□□□ -0.6
LEMD3-205	ENST00000544506	TUSC1	Q2TAM9	212 aa		11.3	□□□□□ -0.6
LEMD3-205	ENST00000544506	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
LEMD3-205	ENST00000544506	SLC27A5	Q9Y2P5	690 aa		11.3	□□□□□ -0.6
LEMD3-205	ENST00000544506	PCDHB15	Q9Y5E8	787 aa		11.3	□□□□□ -0.6
LEMD3-205	ENST00000544506	COPS2	P61201	443 aa		11.29	□□□□□ -0.6
LEMD3-205	ENST00000544506	MTR	Q99707	1265 aa		11.27	□□□□□ -0.61
LEMD3-205	ENST00000544506	NR1I2	O75469	434 aa		11.26	□□□□□ -0.61
LEMD3-205	ENST00000544506	QPCT	Q16769	361 aa		11.26	□□□□□ -0.61
LEMD3-205	ENST00000544506	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.25	□□□□□ -0.61
LEMD3-205	ENST00000544506	RNF19B	Q6ZMZ0	732 aa		11.25	□□□□□ -0.61
LEMD3-205	ENST00000544506	SCUBE3	Q8IX30	993 aa		11.25	□□□□□ -0.61
LEMD3-205	ENST00000544506	CABLES1	Q8TDN4	633 aa		11.25	□□□□□ -0.61
LEMD3-205	ENST00000544506	LILRB3	O75022	631 aa		11.24	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 136 ms