RNA–Protein interactions for RNA: ENST00000542685.5

XRCC4-206, Transcript of X-ray repair cross complementing 4, humanhuman

TSL 1 (best)

Gene XRCC4, Length 1,243 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-206ENST00000542685 METTL3Q86U44 580 aaKnown RBP12.26□□□□□ -0.45
XRCC4-206ENST00000542685 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.25□□□□□ -0.45
XRCC4-206ENST00000542685 A0A0G2JS52 829 aa12.25□□□□□ -0.45
XRCC4-206ENST00000542685 MTRQ99707 1265 aa12.24□□□□□ -0.45
XRCC4-206ENST00000542685 TJAP1Q5JTD0 557 aa12.23□□□□□ -0.45
XRCC4-206ENST00000542685 NLRP7Q8WX94 980 aa12.2□□□□□ -0.46
XRCC4-206ENST00000542685 COPS2P61201 443 aa12.19□□□□□ -0.46
XRCC4-206ENST00000542685 IL21Q9HBE4 155 aa12.19□□□□□ -0.46
XRCC4-206ENST00000542685 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.18□□□□□ -0.46
XRCC4-206ENST00000542685 ZNF516Q92618 1163 aa12.18□□□□□ -0.46
XRCC4-206ENST00000542685 PRR14Q9BWN1 585 aa12.18□□□□□ -0.46
XRCC4-206ENST00000542685 PHOX2BQ99453 314 aa12.17□□□□□ -0.46
XRCC4-206ENST00000542685 CFHP08603 1231 aa12.16□□□□□ -0.46
XRCC4-206ENST00000542685 SLC10A3P09131 477 aa12.16□□□□□ -0.46
XRCC4-206ENST00000542685 PCDHB3Q9Y5E6 796 aa12.16□□□□□ -0.46
XRCC4-206ENST00000542685 MAP2K5Q13163 448 aa12.14□□□□□ -0.47
XRCC4-206ENST00000542685 KMT5BQ4FZB7 885 aa12.14□□□□□ -0.47
XRCC4-206ENST00000542685 LMOD2Q6P5Q4 547 aa12.14□□□□□ -0.47
XRCC4-206ENST00000542685 RSPH4AQ5TD94 716 aa12.13□□□□□ -0.47
XRCC4-206ENST00000542685 DAXXQ9UER7 740 aaPredicted RBP12.13□□□□□ -0.47
XRCC4-206ENST00000542685 DDX11L8A8MPP1 907 aa12.11□□□□□ -0.47
XRCC4-206ENST00000542685 RGS20O76081 388 aa12.11□□□□□ -0.47
XRCC4-206ENST00000542685 BLOC1S3Q6QNY0 202 aa12.11□□□□□ -0.47
XRCC4-206ENST00000542685 NKX2-3Q8TAU0 364 aa12.11□□□□□ -0.47
XRCC4-206ENST00000542685 IRF6O14896 467 aa12.1□□□□□ -0.47
XRCC4-206ENST00000542685 ACTN4O43707 911 aaKnown RBP12.1□□□□□ -0.47
XRCC4-206ENST00000542685 RDH13Q8NBN7 331 aa12.1□□□□□ -0.47
XRCC4-206ENST00000542685 ZPR1O75312 459 aa12.09□□□□□ -0.47
XRCC4-206ENST00000542685 MINK1Q8N4C8 1332 aaPredicted RBP12.09□□□□□ -0.47
XRCC4-206ENST00000542685 PPP1R18Q6NYC8 613 aa12.06□□□□□ -0.48
XRCC4-206ENST00000542685 SULF1Q8IWU6 871 aa12.05□□□□□ -0.48
XRCC4-206ENST00000542685 CCDC102AQ96A19 550 aa12.05□□□□□ -0.48
XRCC4-206ENST00000542685 PUS10Q3MIT2 529 aaKnown RBP12.03□□□□□ -0.48
XRCC4-206ENST00000542685 KRI1Q8N9T8 703 aaKnown RBP12.03□□□□□ -0.48
XRCC4-206ENST00000542685 TLL1O43897 1013 aa12.02□□□□□ -0.49
XRCC4-206ENST00000542685 MDM2Q00987 491 aaPredicted RBP12.02□□□□□ -0.49
XRCC4-206ENST00000542685 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.01□□□□□ -0.49
XRCC4-206ENST00000542685 NR1I2O75469 434 aa12□□□□□ -0.49
XRCC4-206ENST00000542685 ZC3H15Q8WU90 426 aaKnown RBP12□□□□□ -0.49
XRCC4-206ENST00000542685 GCGRP47871 477 aa11.99□□□□□ -0.49
XRCC4-206ENST00000542685 FUT2Q10981 343 aa11.99□□□□□ -0.49
XRCC4-206ENST00000542685 GGCXP38435 758 aa11.98□□□□□ -0.49
XRCC4-206ENST00000542685 SCUBE3Q8IX30 993 aa11.98□□□□□ -0.49
XRCC4-206ENST00000542685 ZMYND10O75800 440 aa11.97□□□□□ -0.49
XRCC4-206ENST00000542685 BARGINQ6ZT62 677 aa11.97□□□□□ -0.49
XRCC4-206ENST00000542685 ATP6V1AP38606 617 aa11.95□□□□□ -0.5
XRCC4-206ENST00000542685 PRKD2Q9BZL6 878 aa11.95□□□□□ -0.5
XRCC4-206ENST00000542685 IRX2Q9BZI1 471 aaPredicted RBP11.94□□□□□ -0.5
XRCC4-206ENST00000542685 SLC24A1O60721 1099 aa11.93□□□□□ -0.5
XRCC4-206ENST00000542685 CD46P15529 392 aa11.93□□□□□ -0.5
XRCC4-206ENST00000542685 CLCN1P35523 988 aa11.93□□□□□ -0.5
XRCC4-206ENST00000542685 MORN1Q5T089 497 aa11.93□□□□□ -0.5
XRCC4-206ENST00000542685 TMUB1Q9BVT8 246 aa11.93□□□□□ -0.5
XRCC4-206ENST00000542685 GPCPD1Q9NPB8 672 aa11.93□□□□□ -0.5
XRCC4-206ENST00000542685 S1PR4O95977 384 aa11.92□□□□□ -0.5
XRCC4-206ENST00000542685 ADH1BP00325 375 aa11.92□□□□□ -0.5
XRCC4-206ENST00000542685 RNF223E7ERA6 249 aa11.91□□□□□ -0.5
XRCC4-206ENST00000542685 SLC27A5Q9Y2P5 690 aa11.91□□□□□ -0.5
XRCC4-206ENST00000542685 SPSB2Q99619 263 aa11.9□□□□□ -0.5
XRCC4-206ENST00000542685 PPEF1O14829 653 aaPredicted RBP11.89□□□□□ -0.51
XRCC4-206ENST00000542685 SLC6A16Q9GZN6 736 aa11.89□□□□□ -0.51
XRCC4-206ENST00000542685 KDM4AO75164 1064 aa11.88□□□□□ -0.51
XRCC4-206ENST00000542685 GRIPAP1Q4V328 841 aa11.88□□□□□ -0.51
XRCC4-206ENST00000542685 FAM217BQ9NTX9 383 aaPredicted RBP11.88□□□□□ -0.51
XRCC4-206ENST00000542685 REPIN1Q9BWE0 567 aaKnown RBP11.87□□□□□ -0.51
XRCC4-206ENST00000542685 V9GY48 417 aaPredicted RBP11.87□□□□□ -0.51
XRCC4-206ENST00000542685 TTLL12Q14166 644 aaPredicted RBP11.86□□□□□ -0.51
XRCC4-206ENST00000542685 FMNL1O95466 1100 aaPredicted RBP11.85□□□□□ -0.51
XRCC4-206ENST00000542685 ANKLE1Q8NAG6 615 aa11.84□□□□□ -0.51
XRCC4-206ENST00000542685 THAP11Q96EK4 314 aa11.84□□□□□ -0.51
XRCC4-206ENST00000542685 SSTR3P32745 418 aaPredicted RBP11.82□□□□□ -0.52
XRCC4-206ENST00000542685 AMHR2Q16671 573 aa11.82□□□□□ -0.52
XRCC4-206ENST00000542685 BRICD5Q6PL45 260 aa11.82□□□□□ -0.52
XRCC4-206ENST00000542685 HLA-CQ95604 372 aa11.82□□□□□ -0.52
XRCC4-206ENST00000542685 SLC19A1P41440 591 aa11.81□□□□□ -0.52
XRCC4-206ENST00000542685 RNF19BQ6ZMZ0 732 aa11.81□□□□□ -0.52
XRCC4-206ENST00000542685 SALL2Q9Y467 1007 aaPredicted RBP11.81□□□□□ -0.52
XRCC4-206ENST00000542685 USP46P62068 366 aa11.8□□□□□ -0.52
XRCC4-206ENST00000542685 NUTM1Q86Y26 1132 aa11.8□□□□□ -0.52
XRCC4-206ENST00000542685 FAM160A2Q8N612 972 aaPredicted RBP11.8□□□□□ -0.52
XRCC4-206ENST00000542685 EMID1Q96A84 441 aaPredicted RBP11.8□□□□□ -0.52
XRCC4-206ENST00000542685 AK7Q96M32 723 aa11.8□□□□□ -0.52
XRCC4-206ENST00000542685 TRIM66O15016 1216 aa11.79□□□□□ -0.52
XRCC4-206ENST00000542685 Q3C1V9 767 aa11.79□□□□□ -0.52
XRCC4-206ENST00000542685 GIGYF2Q6Y7W6 1299 aaKnown RBP11.79□□□□□ -0.52
XRCC4-206ENST00000542685 BCANQ96GW7 911 aa11.79□□□□□ -0.52
XRCC4-206ENST00000542685 HOXA2O43364 376 aa11.78□□□□□ -0.52
XRCC4-206ENST00000542685 GFRA3O60609 400 aa11.78□□□□□ -0.52
XRCC4-206ENST00000542685 PRDM9Q9NQV7 894 aa11.78□□□□□ -0.52
XRCC4-206ENST00000542685 GUCA2AQ02747 115 aa11.77□□□□□ -0.53
XRCC4-206ENST00000542685 PLA2G2CQ5R387 149 aa11.77□□□□□ -0.53
XRCC4-206ENST00000542685 LIAT1Q6ZQX7 453 aa11.76□□□□□ -0.53
XRCC4-206ENST00000542685 Q6ZNB5 142 aa11.75□□□□□ -0.53
XRCC4-206ENST00000542685 PARP9Q8IXQ6 854 aa11.75□□□□□ -0.53
XRCC4-206ENST00000542685 SLC24A3Q9HC58 644 aa11.75□□□□□ -0.53
XRCC4-206ENST00000542685 FCF1Q9Y324 198 aaKnown RBP11.75□□□□□ -0.53
XRCC4-206ENST00000542685 LAPTM4AQ15012 233 aa11.73□□□□□ -0.53
XRCC4-206ENST00000542685 MSS51Q4VC12 460 aa11.73□□□□□ -0.53
XRCC4-206ENST00000542685 SPRYD7Q5W111 196 aa11.73□□□□□ -0.53
XRCC4-206ENST00000542685 PDZRN3Q9UPQ7 1066 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms