RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TMEM131LA2VDJ0 1609 aa24.09■■□□□ 1.45
CLSTN3-213ENST00000541953 RPRD2Q5VT52 1461 aaKnown RBP24.08■■□□□ 1.45
CLSTN3-213ENST00000541953 KCNA6P17658 529 aa24.07■■□□□ 1.44
CLSTN3-213ENST00000541953 RGS17Q9UGC6 210 aaPredicted RBP24.07■■□□□ 1.44
CLSTN3-213ENST00000541953 E9PCH4 1651 aa24.07■■□□□ 1.44
CLSTN3-213ENST00000541953 FAM135BQ49AJ0 1406 aa24.06■■□□□ 1.44
CLSTN3-213ENST00000541953 NKTRP30414 1462 aaKnown RBP24.05■■□□□ 1.44
CLSTN3-213ENST00000541953 SLC52A1Q9NWF4 448 aa24.04■■□□□ 1.44
CLSTN3-213ENST00000541953 CHD2O14647 1828 aaKnown RBP24.03■■□□□ 1.44
CLSTN3-213ENST00000541953 RIMS2Q9UQ26 1411 aa24.02■■□□□ 1.44
CLSTN3-213ENST00000541953 PROSER2Q86WR7 435 aaPredicted RBP24.02■■□□□ 1.44
CLSTN3-213ENST00000541953 IQGAP3Q86VI3 1631 aa24■■□□□ 1.43
CLSTN3-213ENST00000541953 PLEKHG1Q9ULL1 1385 aa24■■□□□ 1.43
CLSTN3-213ENST00000541953 BCANQ96GW7 911 aa23.96■■□□□ 1.43
CLSTN3-213ENST00000541953 ADAMTS13Q76LX8 1427 aa23.95■■□□□ 1.42
CLSTN3-213ENST00000541953 NUTM2DQ5VT03 806 aaPredicted RBP23.95■■□□□ 1.42
CLSTN3-213ENST00000541953 ROCK1Q13464 1354 aa23.93■■□□□ 1.42
CLSTN3-213ENST00000541953 PHLPP1O60346 1717 aa23.93■■□□□ 1.42
CLSTN3-213ENST00000541953 MSH6P52701 1360 aa23.91■■□□□ 1.42
CLSTN3-213ENST00000541953 PPP1R15AO75807 674 aaPredicted RBP23.91■■□□□ 1.42
CLSTN3-213ENST00000541953 CHGAP10645 457 aaKnown RBP23.91■■□□□ 1.42
CLSTN3-213ENST00000541953 PPARGC1BQ86YN6 1023 aaKnown RBP23.9■■□□□ 1.42
CLSTN3-213ENST00000541953 COL16A1Q07092 1604 aaPredicted RBP23.89■■□□□ 1.42
CLSTN3-213ENST00000541953 POTEAQ6S8J7 498 aa23.89■■□□□ 1.41
CLSTN3-213ENST00000541953 ITGAEP38570 1179 aa23.87■■□□□ 1.41
CLSTN3-213ENST00000541953 NRXN3Q9Y4C0 1643 aa23.87■■□□□ 1.41
CLSTN3-213ENST00000541953 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.87■■□□□ 1.41
CLSTN3-213ENST00000541953 SLAIN2Q9P270 581 aa23.86■■□□□ 1.41
CLSTN3-213ENST00000541953 TBX22Q9Y458 520 aa23.86■■□□□ 1.41
CLSTN3-213ENST00000541953 NUP155O75694 1391 aa23.86■■□□□ 1.41
CLSTN3-213ENST00000541953 DIP2AQ14689 1571 aa23.86■■□□□ 1.41
CLSTN3-213ENST00000541953 PTPRUQ92729 1446 aa23.85■■□□□ 1.41
CLSTN3-213ENST00000541953 SETD1AO15047 1707 aaKnown RBP23.84■■□□□ 1.41
CLSTN3-213ENST00000541953 SPHKAPQ2M3C7 1700 aa23.83■■□□□ 1.41
CLSTN3-213ENST00000541953 LRP6O75581 1613 aa23.81■■□□□ 1.4
CLSTN3-213ENST00000541953 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.8■■□□□ 1.4
CLSTN3-213ENST00000541953 TRPM2O94759 1503 aa23.79■■□□□ 1.4
CLSTN3-213ENST00000541953 XRN1Q8IZH2 1706 aaKnown RBP23.79■■□□□ 1.4
CLSTN3-213ENST00000541953 HDGFP51858 240 aaKnown RBP23.78■■□□□ 1.4
CLSTN3-213ENST00000541953 JCADQ9P266 1359 aa23.78■■□□□ 1.4
CLSTN3-213ENST00000541953 NCOA3Q9Y6Q9 1424 aa23.77■■□□□ 1.4
CLSTN3-213ENST00000541953 AHDC1Q5TGY3 1603 aaPredicted RBP23.77■■□□□ 1.4
CLSTN3-213ENST00000541953 PIK3R4Q99570 1358 aa23.77■■□□□ 1.4
CLSTN3-213ENST00000541953 SETBP1Q9Y6X0 1596 aa23.76■■□□□ 1.39
CLSTN3-213ENST00000541953 CLTCL1P53675 1640 aa23.76■■□□□ 1.39
CLSTN3-213ENST00000541953 C14orf37Q86TY3 774 aa23.75■■□□□ 1.39
CLSTN3-213ENST00000541953 AMOTL2Q9Y2J4 779 aa23.73■■□□□ 1.39
CLSTN3-213ENST00000541953 SHPRHQ149N8 1683 aa23.72■■□□□ 1.39
CLSTN3-213ENST00000541953 NEXMIFQ5QGS0 1516 aa23.71■■□□□ 1.39
CLSTN3-213ENST00000541953 METP08581 1390 aa23.7■■□□□ 1.38
CLSTN3-213ENST00000541953 C19orf44Q9H6X5 657 aa23.7■■□□□ 1.38
CLSTN3-213ENST00000541953 CADPS2Q86UW7 1296 aa23.68■■□□□ 1.38
CLSTN3-213ENST00000541953 ATF3P18847 181 aa23.67■■□□□ 1.38
CLSTN3-213ENST00000541953 BRINP3Q76B58 766 aa23.67■■□□□ 1.38
CLSTN3-213ENST00000541953 ASXL1Q8IXJ9 1541 aa23.67■■□□□ 1.38
CLSTN3-213ENST00000541953 NALCNQ8IZF0 1738 aa23.67■■□□□ 1.38
CLSTN3-213ENST00000541953 MST1RQ04912 1400 aa23.66■■□□□ 1.38
CLSTN3-213ENST00000541953 NAIPQ13075 1403 aa23.66■■□□□ 1.38
CLSTN3-213ENST00000541953 RRBP1Q9P2E9 1410 aaKnown RBP23.66■■□□□ 1.38
CLSTN3-213ENST00000541953 NHSL1Q5SYE7 1610 aa23.65■■□□□ 1.38
CLSTN3-213ENST00000541953 ZNF326Q5BKZ1 582 aaKnown RBP23.64■■□□□ 1.37
CLSTN3-213ENST00000541953 DCCP43146 1447 aa23.63■■□□□ 1.37
CLSTN3-213ENST00000541953 SPATA31A6Q5VVP1 1343 aa23.61■■□□□ 1.37
CLSTN3-213ENST00000541953 KIF1BO60333 1816 aa23.61■■□□□ 1.37
CLSTN3-213ENST00000541953 DDX17Q92841 729 aaKnown RBP23.59■■□□□ 1.37
CLSTN3-213ENST00000541953 ADGRL3Q9HAR2 1447 aa23.59■■□□□ 1.37
CLSTN3-213ENST00000541953 MEX3CQ5U5Q3 659 aaKnown RBP23.56■■□□□ 1.36
CLSTN3-213ENST00000541953 SETD5Q9C0A6 1442 aa23.55■■□□□ 1.36
CLSTN3-213ENST00000541953 NUTM2BA6NNL0 878 aaPredicted RBP23.54■■□□□ 1.36
CLSTN3-213ENST00000541953 NUTM2EB1AL46 878 aaPredicted RBP23.54■■□□□ 1.36
CLSTN3-213ENST00000541953 NUTM2AQ8IVF1 878 aaPredicted RBP23.54■■□□□ 1.36
CLSTN3-213ENST00000541953 TRIM52Q96A61 297 aa23.52■■□□□ 1.36
CLSTN3-213ENST00000541953 ROBO2Q9HCK4 1378 aa23.51■■□□□ 1.35
CLSTN3-213ENST00000541953 PPLO60437 1756 aa23.5■■□□□ 1.35
CLSTN3-213ENST00000541953 HFM1A2PYH4 1435 aa23.5■■□□□ 1.35
CLSTN3-213ENST00000541953 PTCH1Q13635 1447 aa23.49■■□□□ 1.35
CLSTN3-213ENST00000541953 C1orf167Q5SNV9 1468 aa23.49■■□□□ 1.35
CLSTN3-213ENST00000541953 ZNF772Q68DY9 489 aaPredicted RBP23.48■■□□□ 1.35
CLSTN3-213ENST00000541953 PNPLA6Q8IY17 1366 aa23.48■■□□□ 1.35
CLSTN3-213ENST00000541953 LAMC1P11047 1609 aa23.47■■□□□ 1.35
CLSTN3-213ENST00000541953 AFF2P51816 1311 aa23.46■■□□□ 1.35
CLSTN3-213ENST00000541953 FOXD1Q16676 465 aa23.44■■□□□ 1.34
CLSTN3-213ENST00000541953 UPF1Q92900 1129 aaKnown RBP eCLIP23.44■■□□□ 1.34
CLSTN3-213ENST00000541953 PRAG1Q86YV5 1406 aa23.43■■□□□ 1.34
CLSTN3-213ENST00000541953 LRRC59Q96AG4 307 aaKnown RBP23.41■■□□□ 1.34
CLSTN3-213ENST00000541953 ORAI2Q96SN7 254 aa23.41■■□□□ 1.34
CLSTN3-213ENST00000541953 SLC4A1APQ9BWU0 796 aaKnown RBP23.4■■□□□ 1.34
CLSTN3-213ENST00000541953 CDK12Q9NYV4 1490 aaPredicted RBP23.39■■□□□ 1.34
CLSTN3-213ENST00000541953 RXRBP28702 533 aa23.39■■□□□ 1.33
CLSTN3-213ENST00000541953 C8orf37Q96NL8 207 aa23.39■■□□□ 1.33
CLSTN3-213ENST00000541953 RGS12O14924 1447 aa23.39■■□□□ 1.33
CLSTN3-213ENST00000541953 VGFO15240 615 aaPredicted RBP23.38■■□□□ 1.33
CLSTN3-213ENST00000541953 IFT172Q9UG01 1749 aa23.38■■□□□ 1.33
CLSTN3-213ENST00000541953 SOS2Q07890 1332 aaPredicted RBP23.35■■□□□ 1.33
CLSTN3-213ENST00000541953 RPGRIP1LQ68CZ1 1315 aa23.34■■□□□ 1.33
CLSTN3-213ENST00000541953 ADGRF5Q8IZF2 1346 aa23.34■■□□□ 1.33
CLSTN3-213ENST00000541953 ADAMTS2O95450 1211 aa23.34■■□□□ 1.33
CLSTN3-213ENST00000541953 CDC42BPGQ6DT37 1551 aa23.34■■□□□ 1.33
CLSTN3-213ENST00000541953 SPATA31E1Q6ZUB1 1445 aa23.33■■□□□ 1.33
CLSTN3-213ENST00000541953 COL22A1Q8NFW1 1626 aaPredicted RBP23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms