RNA–Protein interactions for RNA: ENST00000539372.5

TNFRSF1A-212, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,063 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-212ENST00000539372 RIMS2Q9UQ26 1411 aa28.88■■■□□ 2.21
TNFRSF1A-212ENST00000539372 NAIPQ13075 1403 aa28.87■■■□□ 2.21
TNFRSF1A-212ENST00000539372 PPP1R15AO75807 674 aaPredicted RBP28.86■■■□□ 2.21
TNFRSF1A-212ENST00000539372 ALKQ9UM73 1620 aa28.86■■■□□ 2.21
TNFRSF1A-212ENST00000539372 DISP3Q9P2K9 1392 aa28.85■■■□□ 2.21
TNFRSF1A-212ENST00000539372 HSPA1LP34931 641 aa28.84■■■□□ 2.21
TNFRSF1A-212ENST00000539372 NUTM2DQ5VT03 806 aaPredicted RBP28.83■■■□□ 2.21
TNFRSF1A-212ENST00000539372 KCNA6P17658 529 aa28.82■■■□□ 2.2
TNFRSF1A-212ENST00000539372 HDGFP51858 240 aaKnown RBP28.82■■■□□ 2.2
TNFRSF1A-212ENST00000539372 PLEKHG1Q9ULL1 1385 aa28.81■■■□□ 2.2
TNFRSF1A-212ENST00000539372 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.78■■■□□ 2.2
TNFRSF1A-212ENST00000539372 HFM1A2PYH4 1435 aa28.77■■■□□ 2.2
TNFRSF1A-212ENST00000539372 XIRP1Q702N8 1843 aaKnown RBP28.77■■■□□ 2.2
TNFRSF1A-212ENST00000539372 RBM33Q96EV2 1170 aaKnown RBP28.76■■■□□ 2.19
TNFRSF1A-212ENST00000539372 SPHKAPQ2M3C7 1700 aa28.76■■■□□ 2.19
TNFRSF1A-212ENST00000539372 TMEM94Q12767 1356 aa28.75■■■□□ 2.19
TNFRSF1A-212ENST00000539372 PROSER2Q86WR7 435 aaPredicted RBP28.75■■■□□ 2.19
TNFRSF1A-212ENST00000539372 TRIM52Q96A61 297 aa28.75■■■□□ 2.19
TNFRSF1A-212ENST00000539372 NWD1Q149M9 1564 aa28.71■■■□□ 2.19
TNFRSF1A-212ENST00000539372 TBX22Q9Y458 520 aa28.69■■■□□ 2.18
TNFRSF1A-212ENST00000539372 NKTRP30414 1462 aaKnown RBP28.69■■■□□ 2.18
TNFRSF1A-212ENST00000539372 ADAMTS13Q76LX8 1427 aa28.68■■■□□ 2.18
TNFRSF1A-212ENST00000539372 ZNF326Q5BKZ1 582 aaKnown RBP28.67■■■□□ 2.18
TNFRSF1A-212ENST00000539372 CLTCL1P53675 1640 aa28.66■■■□□ 2.18
TNFRSF1A-212ENST00000539372 TRPM2O94759 1503 aa28.65■■■□□ 2.18
TNFRSF1A-212ENST00000539372 ILDR2Q71H61 639 aa28.65■■■□□ 2.18
TNFRSF1A-212ENST00000539372 SLC4A1APQ9BWU0 796 aaKnown RBP28.64■■■□□ 2.18
TNFRSF1A-212ENST00000539372 CHD2O14647 1828 aaKnown RBP28.64■■■□□ 2.17
TNFRSF1A-212ENST00000539372 DIP2AQ14689 1571 aa28.62■■■□□ 2.17
TNFRSF1A-212ENST00000539372 MSH6P52701 1360 aa28.58■■■□□ 2.17
TNFRSF1A-212ENST00000539372 PIK3R4Q99570 1358 aa28.56■■■□□ 2.16
TNFRSF1A-212ENST00000539372 FOXD1Q16676 465 aa28.55■■■□□ 2.16
TNFRSF1A-212ENST00000539372 MED1Q15648 1581 aaPredicted RBP28.54■■■□□ 2.16
TNFRSF1A-212ENST00000539372 FAM135BQ49AJ0 1406 aa28.54■■■□□ 2.16
TNFRSF1A-212ENST00000539372 NRXN3Q9Y4C0 1643 aa28.54■■■□□ 2.16
TNFRSF1A-212ENST00000539372 NEXMIFQ5QGS0 1516 aa28.53■■■□□ 2.16
TNFRSF1A-212ENST00000539372 PTPRUQ92729 1446 aa28.53■■■□□ 2.16
TNFRSF1A-212ENST00000539372 KIF1BO60333 1816 aa28.53■■■□□ 2.16
TNFRSF1A-212ENST00000539372 C14orf37Q86TY3 774 aa28.53■■■□□ 2.16
TNFRSF1A-212ENST00000539372 AMOTL2Q9Y2J4 779 aa28.53■■■□□ 2.16
TNFRSF1A-212ENST00000539372 SETBP1Q9Y6X0 1596 aa28.53■■■□□ 2.16
TNFRSF1A-212ENST00000539372 ROBO1Q9Y6N7 1651 aa28.49■■■□□ 2.15
TNFRSF1A-212ENST00000539372 SLAIN2Q9P270 581 aa28.48■■■□□ 2.15
TNFRSF1A-212ENST00000539372 NCOA3Q9Y6Q9 1424 aa28.47■■■□□ 2.15
TNFRSF1A-212ENST00000539372 METP08581 1390 aa28.47■■■□□ 2.15
TNFRSF1A-212ENST00000539372 MPHOSPH9Q99550 1183 aa28.46■■■□□ 2.15
TNFRSF1A-212ENST00000539372 C19orf44Q9H6X5 657 aa28.42■■■□□ 2.14
TNFRSF1A-212ENST00000539372 XRN1Q8IZH2 1706 aaKnown RBP28.42■■■□□ 2.14
TNFRSF1A-212ENST00000539372 VGFO15240 615 aaPredicted RBP28.41■■■□□ 2.14
TNFRSF1A-212ENST00000539372 SETD5Q9C0A6 1442 aa28.41■■■□□ 2.14
TNFRSF1A-212ENST00000539372 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.4■■■□□ 2.14
TNFRSF1A-212ENST00000539372 RPGRIP1LQ68CZ1 1315 aa28.4■■■□□ 2.14
TNFRSF1A-212ENST00000539372 ATF3P18847 181 aa28.39■■■□□ 2.14
TNFRSF1A-212ENST00000539372 PHF23Q9BUL5 403 aaPredicted RBP28.39■■■□□ 2.14
TNFRSF1A-212ENST00000539372 CCDC144AA2RUR9 1427 aa28.38■■■□□ 2.13
TNFRSF1A-212ENST00000539372 CADPS2Q86UW7 1296 aa28.38■■■□□ 2.13
TNFRSF1A-212ENST00000539372 SOCS7O14512 581 aa28.36■■■□□ 2.13
TNFRSF1A-212ENST00000539372 RGL3Q3MIN7 710 aa28.34■■■□□ 2.13
TNFRSF1A-212ENST00000539372 PPLO60437 1756 aa28.33■■■□□ 2.13
TNFRSF1A-212ENST00000539372 RAB3GAP2Q9H2M9 1393 aa28.32■■■□□ 2.12
TNFRSF1A-212ENST00000539372 PHLPP1O60346 1717 aa28.32■■■□□ 2.12
TNFRSF1A-212ENST00000539372 SETD1AO15047 1707 aaKnown RBP28.29■■■□□ 2.12
TNFRSF1A-212ENST00000539372 SPATA31E1Q6ZUB1 1445 aa28.29■■■□□ 2.12
TNFRSF1A-212ENST00000539372 ACIN1Q9UKV3 1341 aaKnown RBP28.29■■■□□ 2.12
TNFRSF1A-212ENST00000539372 DCCP43146 1447 aa28.27■■■□□ 2.12
TNFRSF1A-212ENST00000539372 ADGRF5Q8IZF2 1346 aa28.27■■■□□ 2.12
TNFRSF1A-212ENST00000539372 ADGRL3Q9HAR2 1447 aa28.25■■■□□ 2.11
TNFRSF1A-212ENST00000539372 BRINP3Q76B58 766 aa28.24■■■□□ 2.11
TNFRSF1A-212ENST00000539372 ROBO2Q9HCK4 1378 aa28.24■■■□□ 2.11
TNFRSF1A-212ENST00000539372 COL16A1Q07092 1604 aaPredicted RBP28.23■■■□□ 2.11
TNFRSF1A-212ENST00000539372 MST1RQ04912 1400 aa28.22■■■□□ 2.11
TNFRSF1A-212ENST00000539372 PTCH1Q13635 1447 aa28.22■■■□□ 2.11
TNFRSF1A-212ENST00000539372 JCADQ9P266 1359 aa28.22■■■□□ 2.11
TNFRSF1A-212ENST00000539372 NALCNQ8IZF0 1738 aa28.21■■■□□ 2.11
TNFRSF1A-212ENST00000539372 ANKRD30BQ9BXX2 1392 aa28.21■■■□□ 2.11
TNFRSF1A-212ENST00000539372 RGS17Q9UGC6 210 aaPredicted RBP28.2■■■□□ 2.1
TNFRSF1A-212ENST00000539372 AHDC1Q5TGY3 1603 aaPredicted RBP28.2■■■□□ 2.1
TNFRSF1A-212ENST00000539372 IFT172Q9UG01 1749 aa28.18■■■□□ 2.1
TNFRSF1A-212ENST00000539372 ASXL1Q8IXJ9 1541 aa28.18■■■□□ 2.1
TNFRSF1A-212ENST00000539372 PRAG1Q86YV5 1406 aa28.15■■■□□ 2.1
TNFRSF1A-212ENST00000539372 STK26Q9P289 416 aa28.14■■■□□ 2.1
TNFRSF1A-212ENST00000539372 PIK3C2GO75747 1445 aa28.12■■■□□ 2.09
TNFRSF1A-212ENST00000539372 TMEM132EQ6IEE7 984 aa28.11■■■□□ 2.09
TNFRSF1A-212ENST00000539372 DDX17Q92841 729 aaKnown RBP28.1■■■□□ 2.09
TNFRSF1A-212ENST00000539372 C1orf167Q5SNV9 1468 aa28.08■■■□□ 2.09
TNFRSF1A-212ENST00000539372 LRPPRCP42704 1394 aaKnown RBP28.08■■■□□ 2.09
TNFRSF1A-212ENST00000539372 SPATA31A6Q5VVP1 1343 aa28.07■■■□□ 2.08
TNFRSF1A-212ENST00000539372 LRP6O75581 1613 aa28.07■■■□□ 2.08
TNFRSF1A-212ENST00000539372 NHSL1Q5SYE7 1610 aa28.07■■■□□ 2.08
TNFRSF1A-212ENST00000539372 WAPLQ7Z5K2 1190 aa28.06■■■□□ 2.08
TNFRSF1A-212ENST00000539372 HRCP23327 699 aa28.05■■■□□ 2.08
TNFRSF1A-212ENST00000539372 SHPRHQ149N8 1683 aa28.05■■■□□ 2.08
TNFRSF1A-212ENST00000539372 POTEAQ6S8J7 498 aa28.05■■■□□ 2.08
TNFRSF1A-212ENST00000539372 ORAI2Q96SN7 254 aa28.04■■■□□ 2.08
TNFRSF1A-212ENST00000539372 MYOM2P54296 1465 aa28.03■■■□□ 2.08
TNFRSF1A-212ENST00000539372 TECPR2O15040 1411 aa28.03■■■□□ 2.08
TNFRSF1A-212ENST00000539372 MEX3CQ5U5Q3 659 aaKnown RBP28.03■■■□□ 2.08
TNFRSF1A-212ENST00000539372 C14orf93Q9H972 538 aaKnown RBP28.03■■■□□ 2.08
TNFRSF1A-212ENST00000539372 NRXN1Q9ULB1 1477 aa28.02■■■□□ 2.08
TNFRSF1A-212ENST00000539372 ABCC11Q96J66 1382 aa28.02■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms