RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 KDM5AP29375 1690 aaKnown RBP12.99□□□□□ -0.33
USP28-203ENST00000537490 MED1Q15648 1581 aaPredicted RBP12.98□□□□□ -0.33
USP28-203ENST00000537490 CHGAP10645 457 aaKnown RBP12.98□□□□□ -0.33
USP28-203ENST00000537490 ZFYVE9O95405 1425 aa12.96□□□□□ -0.33
USP28-203ENST00000537490 RIMS2Q9UQ26 1411 aa12.96□□□□□ -0.33
USP28-203ENST00000537490 HDGFP51858 240 aaKnown RBP12.96□□□□□ -0.33
USP28-203ENST00000537490 NUP155O75694 1391 aa12.95□□□□□ -0.34
USP28-203ENST00000537490 UNC13BO14795 1591 aa12.95□□□□□ -0.34
USP28-203ENST00000537490 PPP1R15AO75807 674 aaPredicted RBP12.95□□□□□ -0.34
USP28-203ENST00000537490 NUTM2DQ5VT03 806 aaPredicted RBP12.95□□□□□ -0.34
USP28-203ENST00000537490 XIRP1Q702N8 1843 aaKnown RBP12.95□□□□□ -0.34
USP28-203ENST00000537490 PLEKHG1Q9ULL1 1385 aa12.94□□□□□ -0.34
USP28-203ENST00000537490 FAM135BQ49AJ0 1406 aa12.94□□□□□ -0.34
USP28-203ENST00000537490 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.93□□□□□ -0.34
USP28-203ENST00000537490 TBX22Q9Y458 520 aa12.93□□□□□ -0.34
USP28-203ENST00000537490 TMEM131LA2VDJ0 1609 aa12.92□□□□□ -0.34
USP28-203ENST00000537490 E9PCH4 1651 aa12.91□□□□□ -0.34
USP28-203ENST00000537490 GCC2Q8IWJ2 1684 aa12.91□□□□□ -0.34
USP28-203ENST00000537490 NKTRP30414 1462 aaKnown RBP12.91□□□□□ -0.34
USP28-203ENST00000537490 NWD1Q149M9 1564 aa12.9□□□□□ -0.34
USP28-203ENST00000537490 IQGAP3Q86VI3 1631 aa12.9□□□□□ -0.34
USP28-203ENST00000537490 ADAMTS13Q76LX8 1427 aa12.89□□□□□ -0.35
USP28-203ENST00000537490 SLAIN2Q9P270 581 aa12.89□□□□□ -0.35
USP28-203ENST00000537490 RGS17Q9UGC6 210 aaPredicted RBP12.89□□□□□ -0.35
USP28-203ENST00000537490 MYO5BQ9ULV0 1848 aa12.89□□□□□ -0.35
USP28-203ENST00000537490 MSH6P52701 1360 aa12.89□□□□□ -0.35
USP28-203ENST00000537490 RRBP1Q9P2E9 1410 aaKnown RBP12.86□□□□□ -0.35
USP28-203ENST00000537490 AMOTL2Q9Y2J4 779 aa12.85□□□□□ -0.35
USP28-203ENST00000537490 CHD2O14647 1828 aaKnown RBP12.85□□□□□ -0.35
USP28-203ENST00000537490 PIK3R4Q99570 1358 aa12.84□□□□□ -0.35
USP28-203ENST00000537490 ROBO1Q9Y6N7 1651 aa12.84□□□□□ -0.35
USP28-203ENST00000537490 C14orf37Q86TY3 774 aa12.84□□□□□ -0.35
USP28-203ENST00000537490 PTPRUQ92729 1446 aa12.84□□□□□ -0.35
USP28-203ENST00000537490 NCOA3Q9Y6Q9 1424 aa12.84□□□□□ -0.35
USP28-203ENST00000537490 NAIPQ13075 1403 aa12.83□□□□□ -0.36
USP28-203ENST00000537490 ZNF326Q5BKZ1 582 aaKnown RBP12.83□□□□□ -0.36
USP28-203ENST00000537490 C19orf44Q9H6X5 657 aa12.83□□□□□ -0.36
USP28-203ENST00000537490 POTEAQ6S8J7 498 aa12.81□□□□□ -0.36
USP28-203ENST00000537490 CADPS2Q86UW7 1296 aa12.81□□□□□ -0.36
USP28-203ENST00000537490 DIP2AQ14689 1571 aa12.81□□□□□ -0.36
USP28-203ENST00000537490 ATF3P18847 181 aa12.8□□□□□ -0.36
USP28-203ENST00000537490 TRPM2O94759 1503 aa12.79□□□□□ -0.36
USP28-203ENST00000537490 TRIM52Q96A61 297 aa12.79□□□□□ -0.36
USP28-203ENST00000537490 METP08581 1390 aa12.79□□□□□ -0.36
USP28-203ENST00000537490 JCADQ9P266 1359 aa12.79□□□□□ -0.36
USP28-203ENST00000537490 SPHKAPQ2M3C7 1700 aa12.77□□□□□ -0.36
USP28-203ENST00000537490 NRXN3Q9Y4C0 1643 aa12.77□□□□□ -0.37
USP28-203ENST00000537490 BRINP3Q76B58 766 aa12.76□□□□□ -0.37
USP28-203ENST00000537490 SETBP1Q9Y6X0 1596 aa12.76□□□□□ -0.37
USP28-203ENST00000537490 CLTCL1P53675 1640 aa12.76□□□□□ -0.37
USP28-203ENST00000537490 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.76□□□□□ -0.37
USP28-203ENST00000537490 HFM1A2PYH4 1435 aa12.75□□□□□ -0.37
USP28-203ENST00000537490 PHLPP1O60346 1717 aa12.75□□□□□ -0.37
USP28-203ENST00000537490 SLC4A1APQ9BWU0 796 aaKnown RBP12.75□□□□□ -0.37
USP28-203ENST00000537490 NEXMIFQ5QGS0 1516 aa12.74□□□□□ -0.37
USP28-203ENST00000537490 COL16A1Q07092 1604 aaPredicted RBP12.73□□□□□ -0.37
USP28-203ENST00000537490 VGFO15240 615 aaPredicted RBP12.73□□□□□ -0.37
USP28-203ENST00000537490 DCCP43146 1447 aa12.72□□□□□ -0.37
USP28-203ENST00000537490 SPATA31A6Q5VVP1 1343 aa12.72□□□□□ -0.37
USP28-203ENST00000537490 XRN1Q8IZH2 1706 aaKnown RBP12.72□□□□□ -0.37
USP28-203ENST00000537490 MST1RQ04912 1400 aa12.71□□□□□ -0.37
USP28-203ENST00000537490 LRP6O75581 1613 aa12.71□□□□□ -0.37
USP28-203ENST00000537490 AHDC1Q5TGY3 1603 aaPredicted RBP12.71□□□□□ -0.37
USP28-203ENST00000537490 RPGRIP1LQ68CZ1 1315 aa12.7□□□□□ -0.38
USP28-203ENST00000537490 DDX17Q92841 729 aaKnown RBP12.7□□□□□ -0.38
USP28-203ENST00000537490 ADGRL3Q9HAR2 1447 aa12.7□□□□□ -0.38
USP28-203ENST00000537490 MEX3CQ5U5Q3 659 aaKnown RBP12.69□□□□□ -0.38
USP28-203ENST00000537490 NUTM2BA6NNL0 878 aaPredicted RBP12.68□□□□□ -0.38
USP28-203ENST00000537490 NUTM2EB1AL46 878 aaPredicted RBP12.68□□□□□ -0.38
USP28-203ENST00000537490 NUTM2AQ8IVF1 878 aaPredicted RBP12.68□□□□□ -0.38
USP28-203ENST00000537490 ROBO2Q9HCK4 1378 aa12.68□□□□□ -0.38
USP28-203ENST00000537490 ASXL1Q8IXJ9 1541 aa12.67□□□□□ -0.38
USP28-203ENST00000537490 KIF1BO60333 1816 aa12.67□□□□□ -0.38
USP28-203ENST00000537490 MPHOSPH9Q99550 1183 aa12.67□□□□□ -0.38
USP28-203ENST00000537490 SETD5Q9C0A6 1442 aa12.66□□□□□ -0.38
USP28-203ENST00000537490 RGL3Q3MIN7 710 aa12.66□□□□□ -0.38
USP28-203ENST00000537490 ZNF772Q68DY9 489 aaPredicted RBP12.66□□□□□ -0.38
USP28-203ENST00000537490 LRRC59Q96AG4 307 aaKnown RBP12.66□□□□□ -0.38
USP28-203ENST00000537490 ADGRF5Q8IZF2 1346 aa12.65□□□□□ -0.38
USP28-203ENST00000537490 PTCH1Q13635 1447 aa12.65□□□□□ -0.38
USP28-203ENST00000537490 ORAI2Q96SN7 254 aa12.65□□□□□ -0.38
USP28-203ENST00000537490 C1orf167Q5SNV9 1468 aa12.64□□□□□ -0.39
USP28-203ENST00000537490 SHPRHQ149N8 1683 aa12.64□□□□□ -0.39
USP28-203ENST00000537490 CCDC144AA2RUR9 1427 aa12.62□□□□□ -0.39
USP28-203ENST00000537490 SETD1AO15047 1707 aaKnown RBP12.62□□□□□ -0.39
USP28-203ENST00000537490 NALCNQ8IZF0 1738 aa12.62□□□□□ -0.39
USP28-203ENST00000537490 PNPLA6Q8IY17 1366 aa12.62□□□□□ -0.39
USP28-203ENST00000537490 SPATA31E1Q6ZUB1 1445 aa12.62□□□□□ -0.39
USP28-203ENST00000537490 PRAG1Q86YV5 1406 aa12.62□□□□□ -0.39
USP28-203ENST00000537490 AFF2P51816 1311 aa12.62□□□□□ -0.39
USP28-203ENST00000537490 RXRBP28702 533 aa12.61□□□□□ -0.39
USP28-203ENST00000537490 STK26Q9P289 416 aa12.61□□□□□ -0.39
USP28-203ENST00000537490 NHSL1Q5SYE7 1610 aa12.61□□□□□ -0.39
USP28-203ENST00000537490 SOS2Q07890 1332 aaPredicted RBP12.61□□□□□ -0.39
USP28-203ENST00000537490 TMEM132EQ6IEE7 984 aa12.6□□□□□ -0.39
USP28-203ENST00000537490 WAPLQ7Z5K2 1190 aa12.6□□□□□ -0.39
USP28-203ENST00000537490 ANKRD30BQ9BXX2 1392 aa12.59□□□□□ -0.39
USP28-203ENST00000537490 PPLO60437 1756 aa12.59□□□□□ -0.39
USP28-203ENST00000537490 C8orf37Q96NL8 207 aa12.59□□□□□ -0.39
USP28-203ENST00000537490 ADAMTS2O95450 1211 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms