RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SSTR3P32745 418 aaPredicted RBP10.25□□□□□ -0.77
USP28-202ENST00000535607 PSEN2P49810 448 aa10.25□□□□□ -0.77
USP28-202ENST00000535607 PROX2Q3B8N5 592 aa10.25□□□□□ -0.77
USP28-202ENST00000535607 RSPH4AQ5TD94 716 aa10.25□□□□□ -0.77
USP28-202ENST00000535607 SULF1Q8IWU6 871 aa10.25□□□□□ -0.77
USP28-202ENST00000535607 RCCD1A6NED2 376 aa10.24□□□□□ -0.77
USP28-202ENST00000535607 ZNF687Q8N1G0 1237 aa10.24□□□□□ -0.77
USP28-202ENST00000535607 STAC3Q96MF2 364 aa10.23□□□□□ -0.77
USP28-202ENST00000535607 PHOX2BQ99453 314 aa10.23□□□□□ -0.77
USP28-202ENST00000535607 ZBED2Q9BTP6 218 aa10.23□□□□□ -0.77
USP28-202ENST00000535607 KIAA1468Q9P260 1216 aa10.23□□□□□ -0.77
USP28-202ENST00000535607 TRIM26Q12899 539 aaPredicted RBP10.22□□□□□ -0.77
USP28-202ENST00000535607 NLRP7Q8WX94 980 aa10.22□□□□□ -0.77
USP28-202ENST00000535607 NBPF3Q9H094 633 aa10.22□□□□□ -0.77
USP28-202ENST00000535607 RSPH6AQ9H0K4 717 aa10.22□□□□□ -0.77
USP28-202ENST00000535607 RABGEF1Q9UJ41 708 aa10.22□□□□□ -0.77
USP28-202ENST00000535607 MS4A1P11836 297 aa10.21□□□□□ -0.77
USP28-202ENST00000535607 BEGAINQ9BUH8 593 aa10.21□□□□□ -0.77
USP28-202ENST00000535607 FAM217BQ9NTX9 383 aaPredicted RBP10.21□□□□□ -0.77
USP28-202ENST00000535607 FAM198AQ9UFP1 575 aa10.21□□□□□ -0.77
USP28-202ENST00000535607 AXIN2Q9Y2T1 843 aa10.21□□□□□ -0.77
USP28-202ENST00000535607 DIXDC1Q155Q3 683 aa10.2□□□□□ -0.78
USP28-202ENST00000535607 PCMTD1Q96MG8 357 aaPredicted RBP10.2□□□□□ -0.78
USP28-202ENST00000535607 HS3ST6Q96QI5 342 aa10.2□□□□□ -0.78
USP28-202ENST00000535607 EYA1Q99502 592 aa10.2□□□□□ -0.78
USP28-202ENST00000535607 SLC4A5Q9BY07 1137 aa10.2□□□□□ -0.78
USP28-202ENST00000535607 SMAPO00193 183 aa10.19□□□□□ -0.78
USP28-202ENST00000535607 REPIN1Q9BWE0 567 aaKnown RBP10.19□□□□□ -0.78
USP28-202ENST00000535607 DDX11L8A8MPP1 907 aa10.18□□□□□ -0.78
USP28-202ENST00000535607 RDH13Q8NBN7 331 aa10.18□□□□□ -0.78
USP28-202ENST00000535607 TMUB1Q9BVT8 246 aa10.18□□□□□ -0.78
USP28-202ENST00000535607 TMEM134Q9H6X4 195 aa10.17□□□□□ -0.78
USP28-202ENST00000535607 DMRTA1Q5VZB9 504 aa10.16□□□□□ -0.78
USP28-202ENST00000535607 NUTM1Q86Y26 1132 aa10.16□□□□□ -0.78
USP28-202ENST00000535607 SEPT9Q9UHD8 586 aaPredicted RBP10.16□□□□□ -0.78
USP28-202ENST00000535607 PLEKHG3A1L390 1219 aa10.15□□□□□ -0.78
USP28-202ENST00000535607 FAM98CQ17RN3 349 aaKnown RBP10.15□□□□□ -0.78
USP28-202ENST00000535607 C14orf37Q86TY3 774 aa10.15□□□□□ -0.78
USP28-202ENST00000535607 GOPCQ9HD26 462 aa10.15□□□□□ -0.78
USP28-202ENST00000535607 VPS9D1Q9Y2B5 631 aa10.15□□□□□ -0.78
USP28-202ENST00000535607 CCDC88BA6NC98 1476 aa10.15□□□□□ -0.78
USP28-202ENST00000535607 GOLGA8CPA6NN73 597 aa10.14□□□□□ -0.79
USP28-202ENST00000535607 RNF40O75150 1001 aa10.14□□□□□ -0.79
USP28-202ENST00000535607 PPARGC1BQ86YN6 1023 aaKnown RBP10.14□□□□□ -0.79
USP28-202ENST00000535607 MRPL50Q8N5N7 158 aaKnown RBP10.14□□□□□ -0.79
USP28-202ENST00000535607 TK2O00142 265 aa10.13□□□□□ -0.79
USP28-202ENST00000535607 LAPTM4BQ86VI4 370 aa10.13□□□□□ -0.79
USP28-202ENST00000535607 SH3D19Q5HYK7 790 aa10.12□□□□□ -0.79
USP28-202ENST00000535607 SLF2Q8IX21 1173 aa10.12□□□□□ -0.79
USP28-202ENST00000535607 NECTIN2Q92692 538 aa10.12□□□□□ -0.79
USP28-202ENST00000535607 LSM11P83369 360 aaKnown RBP eCLIP10.11□□□□□ -0.796e-18■■■■■ 77.1
USP28-202ENST00000535607 POTEEQ6S8J3 1075 aa10.11□□□□□ -0.79
USP28-202ENST00000535607 SWT1Q5T5J6 900 aaKnown RBP10.1□□□□□ -0.79
USP28-202ENST00000535607 ANKRD13DQ6ZTN6 518 aa10.1□□□□□ -0.79
USP28-202ENST00000535607 PRDM2Q13029 1718 aa10.1□□□□□ -0.79
USP28-202ENST00000535607 C3orf80F5H4A9 247 aa10.09□□□□□ -0.79
USP28-202ENST00000535607 CD46P15529 392 aa10.09□□□□□ -0.79
USP28-202ENST00000535607 SKIV2LQ15477 1246 aaKnown RBP10.09□□□□□ -0.79
USP28-202ENST00000535607 ADGRD1Q6QNK2 874 aa10.09□□□□□ -0.79
USP28-202ENST00000535607 TBC1D2Q9BYX2 928 aa10.08□□□□□ -0.8
USP28-202ENST00000535607 LAMC3Q9Y6N6 1575 aa10.08□□□□□ -0.8
USP28-202ENST00000535607 CFTRP13569 1480 aa10.07□□□□□ -0.8
USP28-202ENST00000535607 POLR3EQ9NVU0 708 aa10.07□□□□□ -0.8
USP28-202ENST00000535607 CLK2P49760 499 aaKnown RBP10.06□□□□□ -0.8
USP28-202ENST00000535607 GRIPAP1Q4V328 841 aa10.06□□□□□ -0.8
USP28-202ENST00000535607 SAMD7Q7Z3H4 446 aa10.06□□□□□ -0.8
USP28-202ENST00000535607 LRCH3Q96II8 777 aa10.06□□□□□ -0.8
USP28-202ENST00000535607 MYSM1Q5VVJ2 828 aa10.05□□□□□ -0.8
USP28-202ENST00000535607 ZFRQ96KR1 1074 aaKnown RBP10.05□□□□□ -0.8
USP28-202ENST00000535607 KDM4AO75164 1064 aa10.04□□□□□ -0.8
USP28-202ENST00000535607 USP46P62068 366 aa10.04□□□□□ -0.8
USP28-202ENST00000535607 KMT5BQ4FZB7 885 aa10.04□□□□□ -0.8
USP28-202ENST00000535607 ANKK1Q8NFD2 765 aa10.04□□□□□ -0.8
USP28-202ENST00000535607 SPIRE2Q8WWL2 714 aa10.04□□□□□ -0.8
USP28-202ENST00000535607 CADPSQ9ULU8 1353 aa10.03□□□□□ -0.8
USP28-202ENST00000535607 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.03□□□□□ -0.8
USP28-202ENST00000535607 POTEB3A0JP26 581 aa10.02□□□□□ -0.81
USP28-202ENST00000535607 POTEBQ6S5H4 581 aa10.02□□□□□ -0.81
USP28-202ENST00000535607 RIC3Q7Z5B4 369 aa10.02□□□□□ -0.81
USP28-202ENST00000535607 PRR14Q9BWN1 585 aa10.02□□□□□ -0.81
USP28-202ENST00000535607 TIMELESSQ9UNS1 1208 aa10.02□□□□□ -0.81
USP28-202ENST00000535607 BHMG1C9JSJ3 638 aaPredicted RBP10.01□□□□□ -0.81
USP28-202ENST00000535607 GCGRP47871 477 aa10.01□□□□□ -0.81
USP28-202ENST00000535607 FLIIQ13045 1269 aa10.01□□□□□ -0.81
USP28-202ENST00000535607 CFHP08603 1231 aa10□□□□□ -0.81
USP28-202ENST00000535607 NUTM2BA6NNL0 878 aaPredicted RBP9.99□□□□□ -0.81
USP28-202ENST00000535607 NUTM2EB1AL46 878 aaPredicted RBP9.99□□□□□ -0.81
USP28-202ENST00000535607 CSPP1Q1MSJ5 1256 aa9.99□□□□□ -0.81
USP28-202ENST00000535607 LCE2DQ5TA82 110 aaPredicted RBP9.99□□□□□ -0.81
USP28-202ENST00000535607 NUTM2DQ5VT03 806 aaPredicted RBP9.99□□□□□ -0.81
USP28-202ENST00000535607 NUTM2AQ8IVF1 878 aaPredicted RBP9.99□□□□□ -0.81
USP28-202ENST00000535607 CENPBP07199 599 aaPredicted RBP9.98□□□□□ -0.81
USP28-202ENST00000535607 PPP4CP60510 307 aa9.98□□□□□ -0.81
USP28-202ENST00000535607 WNT2BQ93097 391 aa9.98□□□□□ -0.81
USP28-202ENST00000535607 MOXD2PA6NHM9 499 aa9.97□□□□□ -0.81
USP28-202ENST00000535607 RSBN1LQ6PCB5 846 aaPredicted RBP9.97□□□□□ -0.81
USP28-202ENST00000535607 PROCA1Q8NCQ7 364 aaPredicted RBP9.97□□□□□ -0.81
USP28-202ENST00000535607 SPTLC1O15269 473 aa9.96□□□□□ -0.82
USP28-202ENST00000535607 SLC10A3P09131 477 aa9.96□□□□□ -0.82
USP28-202ENST00000535607 GJA5P36382 358 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms