RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 KCNA6P17658 529 aa24.58■■□□□ 1.53
CLSTN3-204ENST00000535313 RIMS2Q9UQ26 1411 aa24.57■■□□□ 1.52
CLSTN3-204ENST00000535313 ALKQ9UM73 1620 aa24.57■■□□□ 1.52
CLSTN3-204ENST00000535313 ZFYVE9O95405 1425 aa24.56■■□□□ 1.52
CLSTN3-204ENST00000535313 TMEM131LA2VDJ0 1609 aa24.56■■□□□ 1.52
CLSTN3-204ENST00000535313 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.54■■□□□ 1.52
CLSTN3-204ENST00000535313 MYO5BQ9ULV0 1848 aa24.54■■□□□ 1.52
CLSTN3-204ENST00000535313 PLEKHG1Q9ULL1 1385 aa24.54■■□□□ 1.52
CLSTN3-204ENST00000535313 SENP3Q9H4L4 574 aaPredicted RBP24.53■■□□□ 1.52
CLSTN3-204ENST00000535313 ILDR2Q71H61 639 aa24.52■■□□□ 1.52
CLSTN3-204ENST00000535313 PROSER2Q86WR7 435 aaPredicted RBP24.52■■□□□ 1.52
CLSTN3-204ENST00000535313 TMEM94Q12767 1356 aa24.51■■□□□ 1.51
CLSTN3-204ENST00000535313 XIRP1Q702N8 1843 aaKnown RBP24.48■■□□□ 1.51
CLSTN3-204ENST00000535313 NKTRP30414 1462 aaKnown RBP24.47■■□□□ 1.51
CLSTN3-204ENST00000535313 NAIPQ13075 1403 aa24.46■■□□□ 1.51
CLSTN3-204ENST00000535313 NUTM2DQ5VT03 806 aaPredicted RBP24.46■■□□□ 1.51
CLSTN3-204ENST00000535313 TBX22Q9Y458 520 aa24.46■■□□□ 1.51
CLSTN3-204ENST00000535313 NWD1Q149M9 1564 aa24.46■■□□□ 1.51
CLSTN3-204ENST00000535313 RBM33Q96EV2 1170 aaKnown RBP24.44■■□□□ 1.5
CLSTN3-204ENST00000535313 SPHKAPQ2M3C7 1700 aa24.41■■□□□ 1.5
CLSTN3-204ENST00000535313 MED1Q15648 1581 aaPredicted RBP24.4■■□□□ 1.5
CLSTN3-204ENST00000535313 MSH6P52701 1360 aa24.4■■□□□ 1.5
CLSTN3-204ENST00000535313 HFM1A2PYH4 1435 aa24.39■■□□□ 1.5
CLSTN3-204ENST00000535313 ZNF326Q5BKZ1 582 aaKnown RBP24.39■■□□□ 1.49
CLSTN3-204ENST00000535313 TRIM52Q96A61 297 aa24.39■■□□□ 1.49
CLSTN3-204ENST00000535313 CHD2O14647 1828 aaKnown RBP24.38■■□□□ 1.49
CLSTN3-204ENST00000535313 FAM135BQ49AJ0 1406 aa24.38■■□□□ 1.49
CLSTN3-204ENST00000535313 ADAMTS13Q76LX8 1427 aa24.38■■□□□ 1.49
CLSTN3-204ENST00000535313 DIP2AQ14689 1571 aa24.37■■□□□ 1.49
CLSTN3-204ENST00000535313 SOCS7O14512 581 aa24.37■■□□□ 1.49
CLSTN3-204ENST00000535313 PIK3R4Q99570 1358 aa24.36■■□□□ 1.49
CLSTN3-204ENST00000535313 C14orf37Q86TY3 774 aa24.33■■□□□ 1.49
CLSTN3-204ENST00000535313 TRPM2O94759 1503 aa24.33■■□□□ 1.49
CLSTN3-204ENST00000535313 PHF23Q9BUL5 403 aaPredicted RBP24.32■■□□□ 1.48
CLSTN3-204ENST00000535313 NCOA3Q9Y6Q9 1424 aa24.32■■□□□ 1.48
CLSTN3-204ENST00000535313 SLC4A1APQ9BWU0 796 aaKnown RBP24.31■■□□□ 1.48
CLSTN3-204ENST00000535313 SLAIN2Q9P270 581 aa24.3■■□□□ 1.48
CLSTN3-204ENST00000535313 CLTCL1P53675 1640 aa24.3■■□□□ 1.48
CLSTN3-204ENST00000535313 AMOTL2Q9Y2J4 779 aa24.29■■□□□ 1.48
CLSTN3-204ENST00000535313 ROBO1Q9Y6N7 1651 aa24.28■■□□□ 1.48
CLSTN3-204ENST00000535313 SETBP1Q9Y6X0 1596 aa24.26■■□□□ 1.47
CLSTN3-204ENST00000535313 C19orf44Q9H6X5 657 aa24.25■■□□□ 1.47
CLSTN3-204ENST00000535313 KIF1BO60333 1816 aa24.24■■□□□ 1.47
CLSTN3-204ENST00000535313 CADPS2Q86UW7 1296 aa24.24■■□□□ 1.47
CLSTN3-204ENST00000535313 PTPRUQ92729 1446 aa24.24■■□□□ 1.47
CLSTN3-204ENST00000535313 ATF3P18847 181 aa24.23■■□□□ 1.47
CLSTN3-204ENST00000535313 NEXMIFQ5QGS0 1516 aa24.23■■□□□ 1.47
CLSTN3-204ENST00000535313 NRXN3Q9Y4C0 1643 aa24.23■■□□□ 1.47
CLSTN3-204ENST00000535313 METP08581 1390 aa24.19■■□□□ 1.46
CLSTN3-204ENST00000535313 VGFO15240 615 aaPredicted RBP24.19■■□□□ 1.46
CLSTN3-204ENST00000535313 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.18■■□□□ 1.46
CLSTN3-204ENST00000535313 RPGRIP1LQ68CZ1 1315 aa24.17■■□□□ 1.46
CLSTN3-204ENST00000535313 XRN1Q8IZH2 1706 aaKnown RBP24.16■■□□□ 1.46
CLSTN3-204ENST00000535313 FOXD1Q16676 465 aa24.16■■□□□ 1.46
CLSTN3-204ENST00000535313 PHLPP1O60346 1717 aa24.14■■□□□ 1.45
CLSTN3-204ENST00000535313 MPHOSPH9Q99550 1183 aa24.13■■□□□ 1.45
CLSTN3-204ENST00000535313 DCCP43146 1447 aa24.12■■□□□ 1.45
CLSTN3-204ENST00000535313 ACIN1Q9UKV3 1341 aaKnown RBP24.11■■□□□ 1.45
CLSTN3-204ENST00000535313 JCADQ9P266 1359 aa24.11■■□□□ 1.45
CLSTN3-204ENST00000535313 CCDC144AA2RUR9 1427 aa24.1■■□□□ 1.45
CLSTN3-204ENST00000535313 RGS17Q9UGC6 210 aaPredicted RBP24.07■■□□□ 1.44
CLSTN3-204ENST00000535313 BRINP3Q76B58 766 aa24.06■■□□□ 1.44
CLSTN3-204ENST00000535313 COL16A1Q07092 1604 aaPredicted RBP24.06■■□□□ 1.44
CLSTN3-204ENST00000535313 SETD5Q9C0A6 1442 aa24.05■■□□□ 1.44
CLSTN3-204ENST00000535313 ADGRL3Q9HAR2 1447 aa24.05■■□□□ 1.44
CLSTN3-204ENST00000535313 PPLO60437 1756 aa24.05■■□□□ 1.44
CLSTN3-204ENST00000535313 AHDC1Q5TGY3 1603 aaPredicted RBP24.05■■□□□ 1.44
CLSTN3-204ENST00000535313 RGL3Q3MIN7 710 aa24.04■■□□□ 1.44
CLSTN3-204ENST00000535313 MST1RQ04912 1400 aa24.02■■□□□ 1.44
CLSTN3-204ENST00000535313 PTCH1Q13635 1447 aa24.02■■□□□ 1.44
CLSTN3-204ENST00000535313 SETD1AO15047 1707 aaKnown RBP24.01■■□□□ 1.43
CLSTN3-204ENST00000535313 SPATA31A6Q5VVP1 1343 aa24■■□□□ 1.43
CLSTN3-204ENST00000535313 ANKRD30BQ9BXX2 1392 aa24■■□□□ 1.43
CLSTN3-204ENST00000535313 ROBO2Q9HCK4 1378 aa24■■□□□ 1.43
CLSTN3-204ENST00000535313 SPATA31E1Q6ZUB1 1445 aa24■■□□□ 1.43
CLSTN3-204ENST00000535313 ASXL1Q8IXJ9 1541 aa24■■□□□ 1.43
CLSTN3-204ENST00000535313 ADGRF5Q8IZF2 1346 aa23.99■■□□□ 1.43
CLSTN3-204ENST00000535313 NALCNQ8IZF0 1738 aa23.98■■□□□ 1.43
CLSTN3-204ENST00000535313 PRAG1Q86YV5 1406 aa23.97■■□□□ 1.43
CLSTN3-204ENST00000535313 RAB3GAP2Q9H2M9 1393 aa23.95■■□□□ 1.42
CLSTN3-204ENST00000535313 MEX3CQ5U5Q3 659 aaKnown RBP23.95■■□□□ 1.42
CLSTN3-204ENST00000535313 POTEAQ6S8J7 498 aa23.95■■□□□ 1.42
CLSTN3-204ENST00000535313 SHPRHQ149N8 1683 aa23.93■■□□□ 1.42
CLSTN3-204ENST00000535313 C1orf167Q5SNV9 1468 aa23.92■■□□□ 1.42
CLSTN3-204ENST00000535313 LRRC59Q96AG4 307 aaKnown RBP23.91■■□□□ 1.42
CLSTN3-204ENST00000535313 LRP6O75581 1613 aa23.91■■□□□ 1.42
CLSTN3-204ENST00000535313 STK26Q9P289 416 aa23.9■■□□□ 1.42
CLSTN3-204ENST00000535313 NHSL1Q5SYE7 1610 aa23.9■■□□□ 1.42
CLSTN3-204ENST00000535313 IFT172Q9UG01 1749 aa23.9■■□□□ 1.42
CLSTN3-204ENST00000535313 PIK3C2GO75747 1445 aa23.88■■□□□ 1.41
CLSTN3-204ENST00000535313 NUTM2BA6NNL0 878 aaPredicted RBP23.88■■□□□ 1.41
CLSTN3-204ENST00000535313 NUTM2EB1AL46 878 aaPredicted RBP23.88■■□□□ 1.41
CLSTN3-204ENST00000535313 NUTM2AQ8IVF1 878 aaPredicted RBP23.88■■□□□ 1.41
CLSTN3-204ENST00000535313 DDX17Q92841 729 aaKnown RBP23.88■■□□□ 1.41
CLSTN3-204ENST00000535313 LRPPRCP42704 1394 aaKnown RBP23.87■■□□□ 1.41
CLSTN3-204ENST00000535313 ZNF772Q68DY9 489 aaPredicted RBP23.86■■□□□ 1.41
CLSTN3-204ENST00000535313 TMEM132EQ6IEE7 984 aa23.86■■□□□ 1.41
CLSTN3-204ENST00000535313 ORAI2Q96SN7 254 aa23.85■■□□□ 1.41
CLSTN3-204ENST00000535313 TECPR2O15040 1411 aa23.84■■□□□ 1.41
CLSTN3-204ENST00000535313 ABCC11Q96J66 1382 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms