RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ALKQ9UM73 1620 aa19.8■□□□□ 0.76
CPSF1-204ENST00000529288 TMEM94Q12767 1356 aa19.8■□□□□ 0.76
CPSF1-204ENST00000529288 PHF23Q9BUL5 403 aaPredicted RBP19.79■□□□□ 0.76
CPSF1-204ENST00000529288 RIMS2Q9UQ26 1411 aa19.78■□□□□ 0.76
CPSF1-204ENST00000529288 TET3O43151 1660 aa19.78■□□□□ 0.76
CPSF1-204ENST00000529288 KDM5AP29375 1690 aaKnown RBP19.76■□□□□ 0.75
CPSF1-204ENST00000529288 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.76■□□□□ 0.75
CPSF1-204ENST00000529288 UNC13BO14795 1591 aa19.75■□□□□ 0.75
CPSF1-204ENST00000529288 MED1Q15648 1581 aaPredicted RBP19.74■□□□□ 0.75
CPSF1-204ENST00000529288 PLEKHG1Q9ULL1 1385 aa19.73■□□□□ 0.75
CPSF1-204ENST00000529288 ZFYVE9O95405 1425 aa19.72■□□□□ 0.75
CPSF1-204ENST00000529288 C14orf37Q86TY3 774 aa19.71■□□□□ 0.75
CPSF1-204ENST00000529288 GCC2Q8IWJ2 1684 aa19.71■□□□□ 0.75
CPSF1-204ENST00000529288 ZNF326Q5BKZ1 582 aaKnown RBP19.7■□□□□ 0.74
CPSF1-204ENST00000529288 TMEM131LA2VDJ0 1609 aa19.69■□□□□ 0.74
CPSF1-204ENST00000529288 E9PCH4 1651 aa19.69■□□□□ 0.74
CPSF1-204ENST00000529288 TBX22Q9Y458 520 aa19.69■□□□□ 0.74
CPSF1-204ENST00000529288 MSH6P52701 1360 aa19.69■□□□□ 0.74
CPSF1-204ENST00000529288 IQGAP3Q86VI3 1631 aa19.69■□□□□ 0.74
CPSF1-204ENST00000529288 XIRP1Q702N8 1843 aaKnown RBP19.67■□□□□ 0.74
CPSF1-204ENST00000529288 FAM135BQ49AJ0 1406 aa19.67■□□□□ 0.74
CPSF1-204ENST00000529288 TRIM52Q96A61 297 aa19.66■□□□□ 0.74
CPSF1-204ENST00000529288 NKTRP30414 1462 aaKnown RBP19.66■□□□□ 0.74
CPSF1-204ENST00000529288 MYO5BQ9ULV0 1848 aa19.65■□□□□ 0.74
CPSF1-204ENST00000529288 SLAIN2Q9P270 581 aa19.65■□□□□ 0.74
CPSF1-204ENST00000529288 NWD1Q149M9 1564 aa19.62■□□□□ 0.73
CPSF1-204ENST00000529288 RRBP1Q9P2E9 1410 aaKnown RBP19.62■□□□□ 0.73
CPSF1-204ENST00000529288 ADAMTS13Q76LX8 1427 aa19.61■□□□□ 0.73
CPSF1-204ENST00000529288 AMOTL2Q9Y2J4 779 aa19.61■□□□□ 0.73
CPSF1-204ENST00000529288 ATF3P18847 181 aa19.59■□□□□ 0.73
CPSF1-204ENST00000529288 NAIPQ13075 1403 aa19.59■□□□□ 0.73
CPSF1-204ENST00000529288 ROBO1Q9Y6N7 1651 aa19.57■□□□□ 0.72
CPSF1-204ENST00000529288 PIK3R4Q99570 1358 aa19.56■□□□□ 0.72
CPSF1-204ENST00000529288 CADPS2Q86UW7 1296 aa19.55■□□□□ 0.72
CPSF1-204ENST00000529288 SLC4A1APQ9BWU0 796 aaKnown RBP19.55■□□□□ 0.72
CPSF1-204ENST00000529288 C19orf44Q9H6X5 657 aa19.55■□□□□ 0.72
CPSF1-204ENST00000529288 CHD2O14647 1828 aaKnown RBP19.55■□□□□ 0.72
CPSF1-204ENST00000529288 PTPRUQ92729 1446 aa19.53■□□□□ 0.72
CPSF1-204ENST00000529288 TRPM2O94759 1503 aa19.53■□□□□ 0.72
CPSF1-204ENST00000529288 RGS17Q9UGC6 210 aaPredicted RBP19.53■□□□□ 0.72
CPSF1-204ENST00000529288 DIP2AQ14689 1571 aa19.53■□□□□ 0.72
CPSF1-204ENST00000529288 NCOA3Q9Y6Q9 1424 aa19.52■□□□□ 0.72
CPSF1-204ENST00000529288 SPHKAPQ2M3C7 1700 aa19.52■□□□□ 0.72
CPSF1-204ENST00000529288 METP08581 1390 aa19.49■□□□□ 0.71
CPSF1-204ENST00000529288 HFM1A2PYH4 1435 aa19.49■□□□□ 0.71
CPSF1-204ENST00000529288 JCADQ9P266 1359 aa19.48■□□□□ 0.71
CPSF1-204ENST00000529288 FOXD1Q16676 465 aa19.48■□□□□ 0.71
CPSF1-204ENST00000529288 CLTCL1P53675 1640 aa19.47■□□□□ 0.71
CPSF1-204ENST00000529288 POTEAQ6S8J7 498 aa19.46■□□□□ 0.71
CPSF1-204ENST00000529288 PHLPP1O60346 1717 aa19.45■□□□□ 0.7
CPSF1-204ENST00000529288 VGFO15240 615 aaPredicted RBP19.45■□□□□ 0.7
CPSF1-204ENST00000529288 MEX3CQ5U5Q3 659 aaKnown RBP19.45■□□□□ 0.7
CPSF1-204ENST00000529288 BRINP3Q76B58 766 aa19.44■□□□□ 0.7
CPSF1-204ENST00000529288 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.44■□□□□ 0.7
CPSF1-204ENST00000529288 SETBP1Q9Y6X0 1596 aa19.44■□□□□ 0.7
CPSF1-204ENST00000529288 NEXMIFQ5QGS0 1516 aa19.42■□□□□ 0.7
CPSF1-204ENST00000529288 NRXN3Q9Y4C0 1643 aa19.42■□□□□ 0.7
CPSF1-204ENST00000529288 NUTM2BA6NNL0 878 aaPredicted RBP19.41■□□□□ 0.7
CPSF1-204ENST00000529288 NUTM2EB1AL46 878 aaPredicted RBP19.41■□□□□ 0.7
CPSF1-204ENST00000529288 NUTM2AQ8IVF1 878 aaPredicted RBP19.41■□□□□ 0.7
CPSF1-204ENST00000529288 RGL3Q3MIN7 710 aa19.4■□□□□ 0.7
CPSF1-204ENST00000529288 RPGRIP1LQ68CZ1 1315 aa19.39■□□□□ 0.69
CPSF1-204ENST00000529288 SPATA31A6Q5VVP1 1343 aa19.38■□□□□ 0.69
CPSF1-204ENST00000529288 MPHOSPH9Q99550 1183 aa19.38■□□□□ 0.69
CPSF1-204ENST00000529288 KIF1BO60333 1816 aa19.37■□□□□ 0.69
CPSF1-204ENST00000529288 COL16A1Q07092 1604 aaPredicted RBP19.37■□□□□ 0.69
CPSF1-204ENST00000529288 DDX17Q92841 729 aaKnown RBP19.37■□□□□ 0.69
CPSF1-204ENST00000529288 XRN1Q8IZH2 1706 aaKnown RBP19.37■□□□□ 0.69
CPSF1-204ENST00000529288 DCCP43146 1447 aa19.36■□□□□ 0.69
CPSF1-204ENST00000529288 MST1RQ04912 1400 aa19.35■□□□□ 0.69
CPSF1-204ENST00000529288 ADGRL3Q9HAR2 1447 aa19.34■□□□□ 0.69
CPSF1-204ENST00000529288 CCDC144AA2RUR9 1427 aa19.34■□□□□ 0.69
CPSF1-204ENST00000529288 AHDC1Q5TGY3 1603 aaPredicted RBP19.33■□□□□ 0.69
CPSF1-204ENST00000529288 STK26Q9P289 416 aa19.33■□□□□ 0.68
CPSF1-204ENST00000529288 ROBO2Q9HCK4 1378 aa19.32■□□□□ 0.68
CPSF1-204ENST00000529288 ASXL1Q8IXJ9 1541 aa19.32■□□□□ 0.68
CPSF1-204ENST00000529288 LRRC59Q96AG4 307 aaKnown RBP19.32■□□□□ 0.68
CPSF1-204ENST00000529288 LRP6O75581 1613 aa19.32■□□□□ 0.68
CPSF1-204ENST00000529288 ADGRF5Q8IZF2 1346 aa19.31■□□□□ 0.68
CPSF1-204ENST00000529288 ZNF772Q68DY9 489 aaPredicted RBP19.3■□□□□ 0.68
CPSF1-204ENST00000529288 ORAI2Q96SN7 254 aa19.29■□□□□ 0.68
CPSF1-204ENST00000529288 PTCH1Q13635 1447 aa19.27■□□□□ 0.68
CPSF1-204ENST00000529288 C1orf167Q5SNV9 1468 aa19.27■□□□□ 0.67
CPSF1-204ENST00000529288 TMEM132EQ6IEE7 984 aa19.26■□□□□ 0.67
CPSF1-204ENST00000529288 SETD5Q9C0A6 1442 aa19.25■□□□□ 0.67
CPSF1-204ENST00000529288 WAPLQ7Z5K2 1190 aa19.25■□□□□ 0.67
CPSF1-204ENST00000529288 C8orf37Q96NL8 207 aa19.25■□□□□ 0.67
CPSF1-204ENST00000529288 NALCNQ8IZF0 1738 aa19.25■□□□□ 0.67
CPSF1-204ENST00000529288 NUTM2FA1L443 756 aa19.24■□□□□ 0.67
CPSF1-204ENST00000529288 ESCO1Q5FWF5 840 aa19.24■□□□□ 0.67
CPSF1-204ENST00000529288 AFF2P51816 1311 aa19.24■□□□□ 0.67
CPSF1-204ENST00000529288 SHPRHQ149N8 1683 aa19.24■□□□□ 0.67
CPSF1-204ENST00000529288 ANKRD30BQ9BXX2 1392 aa19.23■□□□□ 0.67
CPSF1-204ENST00000529288 ADAMTS2O95450 1211 aa19.23■□□□□ 0.67
CPSF1-204ENST00000529288 RXRBP28702 533 aa19.23■□□□□ 0.67
CPSF1-204ENST00000529288 PPLO60437 1756 aa19.22■□□□□ 0.67
CPSF1-204ENST00000529288 SPATA31E1Q6ZUB1 1445 aa19.22■□□□□ 0.67
CPSF1-204ENST00000529288 PNPLA6Q8IY17 1366 aa19.21■□□□□ 0.67
CPSF1-204ENST00000529288 SETD1AO15047 1707 aaKnown RBP19.2■□□□□ 0.66
CPSF1-204ENST00000529288 ACIN1Q9UKV3 1341 aaKnown RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms