RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 NECTIN2Q92692 538 aa9.14□□□□□ -0.95
CD44-219ENST00000525685 SLC4A3P48751 1232 aa9.13□□□□□ -0.95
CD44-219ENST00000525685 A0A0G2JS52 829 aa9.12□□□□□ -0.95
CD44-219ENST00000525685 KCNC4Q03721 635 aa9.12□□□□□ -0.95
CD44-219ENST00000525685 TJAP1Q5JTD0 557 aa9.12□□□□□ -0.95
CD44-219ENST00000525685 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.12□□□□□ -0.95
CD44-219ENST00000525685 MTRQ99707 1265 aa9.09□□□□□ -0.95
CD44-219ENST00000525685 PHOX2BQ99453 314 aa9.08□□□□□ -0.96
CD44-219ENST00000525685 SLC10A3P09131 477 aa9.07□□□□□ -0.96
CD44-219ENST00000525685 MAP2K5Q13163 448 aa9.07□□□□□ -0.96
CD44-219ENST00000525685 LMOD2Q6P5Q4 547 aa9.07□□□□□ -0.96
CD44-219ENST00000525685 PRR14Q9BWN1 585 aa9.07□□□□□ -0.96
CD44-219ENST00000525685 IL21Q9HBE4 155 aa9.07□□□□□ -0.96
CD44-219ENST00000525685 NLRP7Q8WX94 980 aa9.06□□□□□ -0.96
CD44-219ENST00000525685 ZNF516Q92618 1163 aa9.05□□□□□ -0.96
CD44-219ENST00000525685 DAXXQ9UER7 740 aaPredicted RBP9.05□□□□□ -0.96
CD44-219ENST00000525685 IRF6O14896 467 aa9.04□□□□□ -0.96
CD44-219ENST00000525685 CFHP08603 1231 aa9.04□□□□□ -0.96
CD44-219ENST00000525685 ACTN4O43707 911 aaKnown RBP9.03□□□□□ -0.96
CD44-219ENST00000525685 RGS20O76081 388 aa9.03□□□□□ -0.96
CD44-219ENST00000525685 COPS2P61201 443 aa9.03□□□□□ -0.96
CD44-219ENST00000525685 KMT5BQ4FZB7 885 aa9.03□□□□□ -0.96
CD44-219ENST00000525685 PCDHB3Q9Y5E6 796 aa9.03□□□□□ -0.96
CD44-219ENST00000525685 MINK1Q8N4C8 1332 aaPredicted RBP9.03□□□□□ -0.96
CD44-219ENST00000525685 BLOC1S3Q6QNY0 202 aa9.01□□□□□ -0.97
CD44-219ENST00000525685 BCANQ96GW7 911 aa9.01□□□□□ -0.97
CD44-219ENST00000525685 RSPH4AQ5TD94 716 aa9□□□□□ -0.97
CD44-219ENST00000525685 CCDC102AQ96A19 550 aa9□□□□□ -0.97
CD44-219ENST00000525685 DDX11L8A8MPP1 907 aa8.99□□□□□ -0.97
CD44-219ENST00000525685 ZPR1O75312 459 aa8.99□□□□□ -0.97
CD44-219ENST00000525685 NKX2-3Q8TAU0 364 aa8.99□□□□□ -0.97
CD44-219ENST00000525685 SULF1Q8IWU6 871 aa8.98□□□□□ -0.97
CD44-219ENST00000525685 ZC3H15Q8WU90 426 aaKnown RBP8.98□□□□□ -0.97
CD44-219ENST00000525685 ZMYND10O75800 440 aa8.97□□□□□ -0.97
CD44-219ENST00000525685 BARGINQ6ZT62 677 aa8.97□□□□□ -0.97
CD44-219ENST00000525685 RDH13Q8NBN7 331 aa8.97□□□□□ -0.97
CD44-219ENST00000525685 PPP1R18Q6NYC8 613 aa8.95□□□□□ -0.98
CD44-219ENST00000525685 GCGRP47871 477 aa8.94□□□□□ -0.98
CD44-219ENST00000525685 MDM2Q00987 491 aaPredicted RBP8.94□□□□□ -0.98
CD44-219ENST00000525685 TLL1O43897 1013 aa8.93□□□□□ -0.98
CD44-219ENST00000525685 NR1I2O75469 434 aa8.93□□□□□ -0.98
CD44-219ENST00000525685 PUS10Q3MIT2 529 aaKnown RBP8.93□□□□□ -0.98
CD44-219ENST00000525685 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.93□□□□□ -0.98
CD44-219ENST00000525685 CD46P15529 392 aa8.92□□□□□ -0.98
CD44-219ENST00000525685 FUT2Q10981 343 aa8.92□□□□□ -0.98
CD44-219ENST00000525685 SCUBE3Q8IX30 993 aa8.91□□□□□ -0.98
CD44-219ENST00000525685 KRI1Q8N9T8 703 aaKnown RBP8.91□□□□□ -0.98
CD44-219ENST00000525685 TMUB1Q9BVT8 246 aa8.91□□□□□ -0.98
CD44-219ENST00000525685 CLCN1P35523 988 aa8.9□□□□□ -0.98
CD44-219ENST00000525685 ATP6V1AP38606 617 aa8.9□□□□□ -0.98
CD44-219ENST00000525685 MORN1Q5T089 497 aa8.9□□□□□ -0.98
CD44-219ENST00000525685 GPCPD1Q9NPB8 672 aa8.9□□□□□ -0.98
CD44-219ENST00000525685 ADH1BP00325 375 aa8.89□□□□□ -0.99
CD44-219ENST00000525685 GGCXP38435 758 aa8.89□□□□□ -0.99
CD44-219ENST00000525685 FAM217BQ9NTX9 383 aaPredicted RBP8.88□□□□□ -0.99
CD44-219ENST00000525685 REPIN1Q9BWE0 567 aaKnown RBP8.87□□□□□ -0.99
CD44-219ENST00000525685 RNF223E7ERA6 249 aa8.86□□□□□ -0.99
CD44-219ENST00000525685 AMHR2Q16671 573 aa8.86□□□□□ -0.99
CD44-219ENST00000525685 PRKD2Q9BZL6 878 aa8.86□□□□□ -0.99
CD44-219ENST00000525685 SLC27A5Q9Y2P5 690 aa8.86□□□□□ -0.99
CD44-219ENST00000525685 S1PR4O95977 384 aa8.85□□□□□ -0.99
CD44-219ENST00000525685 THAP11Q96EK4 314 aa8.85□□□□□ -0.99
CD44-219ENST00000525685 SPSB2Q99619 263 aa8.85□□□□□ -0.99
CD44-219ENST00000525685 KDM4AO75164 1064 aa8.84□□□□□ -0.99
CD44-219ENST00000525685 GRIPAP1Q4V328 841 aa8.84□□□□□ -0.99
CD44-219ENST00000525685 IRX2Q9BZI1 471 aaPredicted RBP8.84□□□□□ -0.99
CD44-219ENST00000525685 V9GY48 417 aaPredicted RBP8.84□□□□□ -0.99
CD44-219ENST00000525685 SLC6A16Q9GZN6 736 aa8.83□□□□□ -1
CD44-219ENST00000525685 SALL2Q9Y467 1007 aaPredicted RBP8.83□□□□□ -1
CD44-219ENST00000525685 USP46P62068 366 aa8.82□□□□□ -1
CD44-219ENST00000525685 ANKLE1Q8NAG6 615 aa8.82□□□□□ -1
CD44-219ENST00000525685 PPEF1O14829 653 aaPredicted RBP8.81□□□□□ -1
CD44-219ENST00000525685 TRIM66O15016 1216 aa8.81□□□□□ -1
CD44-219ENST00000525685 FMNL1O95466 1100 aaPredicted RBP8.81□□□□□ -1
CD44-219ENST00000525685 SSTR3P32745 418 aaPredicted RBP8.81□□□□□ -1
CD44-219ENST00000525685 TTLL12Q14166 644 aaPredicted RBP8.81□□□□□ -1
CD44-219ENST00000525685 BRICD5Q6PL45 260 aa8.81□□□□□ -1
CD44-219ENST00000525685 AK7Q96M32 723 aa8.81□□□□□ -1
CD44-219ENST00000525685 RNF19BQ6ZMZ0 732 aa8.8□□□□□ -1
CD44-219ENST00000525685 FAM160A2Q8N612 972 aaPredicted RBP8.8□□□□□ -1
CD44-219ENST00000525685 EMID1Q96A84 441 aaPredicted RBP8.8□□□□□ -1
CD44-219ENST00000525685 HOXA2O43364 376 aa8.79□□□□□ -1
CD44-219ENST00000525685 GIGYF2Q6Y7W6 1299 aaKnown RBP8.79□□□□□ -1
CD44-219ENST00000525685 HLA-CQ95604 372 aa8.79□□□□□ -1
CD44-219ENST00000525685 PARP9Q8IXQ6 854 aa8.78□□□□□ -1
CD44-219ENST00000525685 Q3C1V9 767 aa8.77□□□□□ -1.01
CD44-219ENST00000525685 SLC24A3Q9HC58 644 aa8.77□□□□□ -1.01
CD44-219ENST00000525685 SLC19A1P41440 591 aa8.76□□□□□ -1.01
CD44-219ENST00000525685 MSS51Q4VC12 460 aa8.76□□□□□ -1.01
CD44-219ENST00000525685 PLA2G2CQ5R387 149 aa8.76□□□□□ -1.01
CD44-219ENST00000525685 NUTM1Q86Y26 1132 aa8.76□□□□□ -1.01
CD44-219ENST00000525685 PRDM9Q9NQV7 894 aa8.76□□□□□ -1.01
CD44-219ENST00000525685 GUCA2AQ02747 115 aa8.75□□□□□ -1.01
CD44-219ENST00000525685 LIAT1Q6ZQX7 453 aa8.75□□□□□ -1.01
CD44-219ENST00000525685 SPIRE2Q8WWL2 714 aa8.74□□□□□ -1.01
CD44-219ENST00000525685 MS4A1P11836 297 aa8.73□□□□□ -1.01
CD44-219ENST00000525685 PDE4DQ08499 809 aa8.73□□□□□ -1.01
CD44-219ENST00000525685 SPRYD7Q5W111 196 aa8.73□□□□□ -1.01
CD44-219ENST00000525685 USB1Q9BQ65 265 aaKnown RBP8.73□□□□□ -1.01
CD44-219ENST00000525685 BEGAINQ9BUH8 593 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms