RNA–Protein interactions for RNA: ENST00000523328.5

PVT1-218, Transcript of Pvt1 oncogene, humanhuman

TSL 1 (best)

Gene PVT1, Length 343 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-218ENST00000523328 MYO5BQ9ULV0 1848 aa35.48■■■■□ 3.27
PVT1-218ENST00000523328 RPRD2Q5VT52 1461 aaKnown RBP35.48■■■■□ 3.27
PVT1-218ENST00000523328 ANKRD50Q9ULJ7 1429 aa35.44■■■■□ 3.26
PVT1-218ENST00000523328 ZFYVE9O95405 1425 aa35.43■■■■□ 3.26
PVT1-218ENST00000523328 GCC2Q8IWJ2 1684 aa35.41■■■■□ 3.26
PVT1-218ENST00000523328 CHD2O14647 1828 aaKnown RBP35.41■■■■□ 3.26
PVT1-218ENST00000523328 TMEM131LA2VDJ0 1609 aa35.38■■■■□ 3.25
PVT1-218ENST00000523328 PLEKHG1Q9ULL1 1385 aa35.38■■■■□ 3.25
PVT1-218ENST00000523328 FAM50AQ14320 339 aaKnown RBP35.37■■■■□ 3.25
PVT1-218ENST00000523328 BCANQ96GW7 911 aa35.37■■■■□ 3.25
PVT1-218ENST00000523328 MSH6P52701 1360 aa35.37■■■■□ 3.25
PVT1-218ENST00000523328 RIMS2Q9UQ26 1411 aa35.34■■■■□ 3.25
PVT1-218ENST00000523328 POTEAQ6S8J7 498 aa35.34■■■■□ 3.25
PVT1-218ENST00000523328 UNC13BO14795 1591 aa35.32■■■■□ 3.24
PVT1-218ENST00000523328 PHLPP1O60346 1717 aa35.32■■■■□ 3.24
PVT1-218ENST00000523328 SLAIN2Q9P270 581 aa35.3■■■■□ 3.24
PVT1-218ENST00000523328 PPP1R15AO75807 674 aaPredicted RBP35.27■■■■□ 3.24
PVT1-218ENST00000523328 HDGFP51858 240 aaKnown RBP35.27■■■■□ 3.24
PVT1-218ENST00000523328 E9PCH4 1651 aa35.26■■■■□ 3.23
PVT1-218ENST00000523328 TBX22Q9Y458 520 aa35.25■■■■□ 3.23
PVT1-218ENST00000523328 NCOA3Q9Y6Q9 1424 aa35.22■■■■□ 3.23
PVT1-218ENST00000523328 JCADQ9P266 1359 aa35.21■■■■□ 3.23
PVT1-218ENST00000523328 ADAMTS13Q76LX8 1427 aa35.21■■■■□ 3.23
PVT1-218ENST00000523328 COL16A1Q07092 1604 aaPredicted RBP35.21■■■■□ 3.23
PVT1-218ENST00000523328 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.19■■■■□ 3.22
PVT1-218ENST00000523328 IQGAP3Q86VI3 1631 aa35.17■■■■□ 3.22
PVT1-218ENST00000523328 DIP2AQ14689 1571 aa35.17■■■■□ 3.22
PVT1-218ENST00000523328 CHGAP10645 457 aaKnown RBP35.17■■■■□ 3.22
PVT1-218ENST00000523328 SIPA1L2Q9P2F8 1722 aaPredicted RBP35.15■■■■□ 3.22
PVT1-218ENST00000523328 NUTM2DQ5VT03 806 aaPredicted RBP35.14■■■■□ 3.22
PVT1-218ENST00000523328 ROCK1Q13464 1354 aa35.13■■■■□ 3.21
PVT1-218ENST00000523328 PIK3R4Q99570 1358 aa35.13■■■■□ 3.21
PVT1-218ENST00000523328 SETD1AO15047 1707 aaKnown RBP35.12■■■■□ 3.21
PVT1-218ENST00000523328 AHDC1Q5TGY3 1603 aaPredicted RBP35.08■■■■□ 3.21
PVT1-218ENST00000523328 C14orf37Q86TY3 774 aa35.08■■■■□ 3.21
PVT1-218ENST00000523328 LRP6O75581 1613 aa35.07■■■■□ 3.21
PVT1-218ENST00000523328 C19orf44Q9H6X5 657 aa35.07■■■■□ 3.2
PVT1-218ENST00000523328 CADPS2Q86UW7 1296 aa35.06■■■■□ 3.2
PVT1-218ENST00000523328 TRPM2O94759 1503 aa35.06■■■■□ 3.2
PVT1-218ENST00000523328 PTPRUQ92729 1446 aa35.04■■■■□ 3.2
PVT1-218ENST00000523328 SPATA31A6Q5VVP1 1343 aa35.03■■■■□ 3.2
PVT1-218ENST00000523328 NUP155O75694 1391 aa35.02■■■■□ 3.2
PVT1-218ENST00000523328 SHPRHQ149N8 1683 aa35.02■■■■□ 3.2
PVT1-218ENST00000523328 ATF3P18847 181 aa35.01■■■■□ 3.2
PVT1-218ENST00000523328 AMOTL2Q9Y2J4 779 aa34.99■■■■□ 3.19
PVT1-218ENST00000523328 NRXN3Q9Y4C0 1643 aa34.99■■■■□ 3.19
PVT1-218ENST00000523328 XRN1Q8IZH2 1706 aaKnown RBP34.96■■■■□ 3.19
PVT1-218ENST00000523328 SETBP1Q9Y6X0 1596 aa34.94■■■■□ 3.18
PVT1-218ENST00000523328 SPHKAPQ2M3C7 1700 aa34.94■■■■□ 3.18
PVT1-218ENST00000523328 BRINP3Q76B58 766 aa34.93■■■■□ 3.18
PVT1-218ENST00000523328 DCCP43146 1447 aa34.92■■■■□ 3.18
PVT1-218ENST00000523328 MEX3CQ5U5Q3 659 aaKnown RBP34.91■■■■□ 3.18
PVT1-218ENST00000523328 ZNF772Q68DY9 489 aaPredicted RBP34.89■■■■□ 3.18
PVT1-218ENST00000523328 ITGAEP38570 1179 aa34.88■■■■□ 3.17
PVT1-218ENST00000523328 ASXL1Q8IXJ9 1541 aa34.86■■■■□ 3.17
PVT1-218ENST00000523328 MST1RQ04912 1400 aa34.84■■■■□ 3.17
PVT1-218ENST00000523328 NHSL1Q5SYE7 1610 aa34.84■■■■□ 3.17
PVT1-218ENST00000523328 METP08581 1390 aa34.83■■■■□ 3.17
PVT1-218ENST00000523328 SETD5Q9C0A6 1442 aa34.81■■■■□ 3.16
PVT1-218ENST00000523328 ZNF326Q5BKZ1 582 aaKnown RBP34.79■■■■□ 3.16
PVT1-218ENST00000523328 TRIM52Q96A61 297 aa34.79■■■■□ 3.16
PVT1-218ENST00000523328 CLTCL1P53675 1640 aa34.77■■■■□ 3.16
PVT1-218ENST00000523328 NEXMIFQ5QGS0 1516 aa34.77■■■■□ 3.16
PVT1-218ENST00000523328 UPF1Q92900 1129 aaKnown RBP eCLIP34.77■■■■□ 3.16
PVT1-218ENST00000523328 NUTM2BA6NNL0 878 aaPredicted RBP34.76■■■■□ 3.16
PVT1-218ENST00000523328 NUTM2EB1AL46 878 aaPredicted RBP34.76■■■■□ 3.16
PVT1-218ENST00000523328 NUTM2AQ8IVF1 878 aaPredicted RBP34.76■■■■□ 3.16
PVT1-218ENST00000523328 ADGRL3Q9HAR2 1447 aa34.74■■■■□ 3.15
PVT1-218ENST00000523328 NALCNQ8IZF0 1738 aa34.74■■■■□ 3.15
PVT1-218ENST00000523328 RXRBP28702 533 aa34.72■■■■□ 3.15
PVT1-218ENST00000523328 CDK12Q9NYV4 1490 aaPredicted RBP34.71■■■■□ 3.15
PVT1-218ENST00000523328 PPARGC1BQ86YN6 1023 aaKnown RBP34.7■■■■□ 3.15
PVT1-218ENST00000523328 KIF1BO60333 1816 aa34.69■■■■□ 3.14
PVT1-218ENST00000523328 LRRC59Q96AG4 307 aaKnown RBP34.69■■■■□ 3.14
PVT1-218ENST00000523328 AFF2P51816 1311 aa34.69■■■■□ 3.14
PVT1-218ENST00000523328 DDX17Q92841 729 aaKnown RBP34.66■■■■□ 3.14
PVT1-218ENST00000523328 PNPLA6Q8IY17 1366 aa34.64■■■■□ 3.14
PVT1-218ENST00000523328 LAMC1P11047 1609 aa34.6■■■■□ 3.13
PVT1-218ENST00000523328 C1orf167Q5SNV9 1468 aa34.59■■■■□ 3.13
PVT1-218ENST00000523328 NAIPQ13075 1403 aa34.59■■■■□ 3.13
PVT1-218ENST00000523328 PTCH1Q13635 1447 aa34.58■■■■□ 3.13
PVT1-218ENST00000523328 C8orf37Q96NL8 207 aa34.57■■■■□ 3.12
PVT1-218ENST00000523328 RRBP1Q9P2E9 1410 aaKnown RBP34.55■■■■□ 3.12
PVT1-218ENST00000523328 RGS12O14924 1447 aa34.54■■■■□ 3.12
PVT1-218ENST00000523328 ROBO2Q9HCK4 1378 aa34.53■■■■□ 3.12
PVT1-218ENST00000523328 QTRT2Q9H974 415 aaKnown RBP34.52■■■■□ 3.12
PVT1-218ENST00000523328 PRAG1Q86YV5 1406 aa34.52■■■■□ 3.12
PVT1-218ENST00000523328 VGFO15240 615 aaPredicted RBP34.51■■■■□ 3.12
PVT1-218ENST00000523328 RBM6P78332 1123 aaKnown RBP34.5■■■■□ 3.11
PVT1-218ENST00000523328 SOS2Q07890 1332 aaPredicted RBP34.49■■■■□ 3.11
PVT1-218ENST00000523328 ORAI2Q96SN7 254 aa34.47■■■■□ 3.11
PVT1-218ENST00000523328 PPLO60437 1756 aa34.46■■■■□ 3.11
PVT1-218ENST00000523328 ADAMTS2O95450 1211 aa34.45■■■■□ 3.11
PVT1-218ENST00000523328 RPGRIP1LQ68CZ1 1315 aa34.44■■■■□ 3.1
PVT1-218ENST00000523328 NGLY1Q96IV0 654 aa34.43■■■■□ 3.1
PVT1-218ENST00000523328 HFM1A2PYH4 1435 aa34.41■■■■□ 3.1
PVT1-218ENST00000523328 COL22A1Q8NFW1 1626 aaPredicted RBP34.39■■■■□ 3.1
PVT1-218ENST00000523328 SLC4A1APQ9BWU0 796 aaKnown RBP34.35■■■■□ 3.09
PVT1-218ENST00000523328 CDC42BPGQ6DT37 1551 aa34.34■■■■□ 3.09
PVT1-218ENST00000523328 USP21Q9UK80 565 aa34.33■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms