RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 XIRP1Q702N8 1843 aaKnown RBP26.55■■□□□ 1.84
DDX41-217ENST00000515562 PLEKHG1Q9ULL1 1385 aa26.55■■□□□ 1.84
DDX41-217ENST00000515562 NWD1Q149M9 1564 aa26.54■■□□□ 1.84
DDX41-217ENST00000515562 SLC26A8Q96RN1 970 aa26.54■■□□□ 1.84
DDX41-217ENST00000515562 PPP1R15AO75807 674 aaPredicted RBP26.53■■□□□ 1.84
DDX41-217ENST00000515562 NKTRP30414 1462 aaKnown RBP26.53■■□□□ 1.84
DDX41-217ENST00000515562 SPHKAPQ2M3C7 1700 aa26.53■■□□□ 1.84
DDX41-217ENST00000515562 KCNA6P17658 529 aa26.52■■□□□ 1.84
DDX41-217ENST00000515562 HSPA1LP34931 641 aa26.52■■□□□ 1.84
DDX41-217ENST00000515562 NAIPQ13075 1403 aa26.52■■□□□ 1.84
DDX41-217ENST00000515562 BCANQ96GW7 911 aa26.51■■□□□ 1.83
DDX41-217ENST00000515562 CHGAP10645 457 aaKnown RBP26.5■■□□□ 1.83
DDX41-217ENST00000515562 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.5■■□□□ 1.83
DDX41-217ENST00000515562 HFM1A2PYH4 1435 aa26.48■■□□□ 1.83
DDX41-217ENST00000515562 TMEM94Q12767 1356 aa26.46■■□□□ 1.83
DDX41-217ENST00000515562 DIP2AQ14689 1571 aa26.46■■□□□ 1.83
DDX41-217ENST00000515562 CHD2O14647 1828 aaKnown RBP26.43■■□□□ 1.82
DDX41-217ENST00000515562 TRPM2O94759 1503 aa26.41■■□□□ 1.82
DDX41-217ENST00000515562 PROSER2Q86WR7 435 aaPredicted RBP26.41■■□□□ 1.82
DDX41-217ENST00000515562 TBX22Q9Y458 520 aa26.4■■□□□ 1.82
DDX41-217ENST00000515562 MED1Q15648 1581 aaPredicted RBP26.39■■□□□ 1.82
DDX41-217ENST00000515562 ADAMTS13Q76LX8 1427 aa26.39■■□□□ 1.81
DDX41-217ENST00000515562 SENP3Q9H4L4 574 aaPredicted RBP26.38■■□□□ 1.81
DDX41-217ENST00000515562 PIK3R4Q99570 1358 aa26.37■■□□□ 1.81
DDX41-217ENST00000515562 CLTCL1P53675 1640 aa26.37■■□□□ 1.81
DDX41-217ENST00000515562 NUTM2DQ5VT03 806 aaPredicted RBP26.36■■□□□ 1.81
DDX41-217ENST00000515562 ILDR2Q71H61 639 aa26.36■■□□□ 1.81
DDX41-217ENST00000515562 MSH6P52701 1360 aa26.35■■□□□ 1.81
DDX41-217ENST00000515562 FAM135BQ49AJ0 1406 aa26.35■■□□□ 1.81
DDX41-217ENST00000515562 SETBP1Q9Y6X0 1596 aa26.33■■□□□ 1.8
DDX41-217ENST00000515562 RBM33Q96EV2 1170 aaKnown RBP26.32■■□□□ 1.8
DDX41-217ENST00000515562 NCOA3Q9Y6Q9 1424 aa26.31■■□□□ 1.8
DDX41-217ENST00000515562 KIF1BO60333 1816 aa26.31■■□□□ 1.8
DDX41-217ENST00000515562 TRIM52Q96A61 297 aa26.31■■□□□ 1.8
DDX41-217ENST00000515562 NRXN3Q9Y4C0 1643 aa26.3■■□□□ 1.8
DDX41-217ENST00000515562 ZNF326Q5BKZ1 582 aaKnown RBP26.3■■□□□ 1.8
DDX41-217ENST00000515562 ROBO1Q9Y6N7 1651 aa26.3■■□□□ 1.8
DDX41-217ENST00000515562 NEXMIFQ5QGS0 1516 aa26.29■■□□□ 1.8
DDX41-217ENST00000515562 SLC4A1APQ9BWU0 796 aaKnown RBP26.25■■□□□ 1.79
DDX41-217ENST00000515562 XRN1Q8IZH2 1706 aaKnown RBP26.23■■□□□ 1.79
DDX41-217ENST00000515562 SOCS7O14512 581 aa26.22■■□□□ 1.79
DDX41-217ENST00000515562 C14orf37Q86TY3 774 aa26.21■■□□□ 1.79
DDX41-217ENST00000515562 PTPRUQ92729 1446 aa26.21■■□□□ 1.79
DDX41-217ENST00000515562 SLAIN2Q9P270 581 aa26.2■■□□□ 1.78
DDX41-217ENST00000515562 AMOTL2Q9Y2J4 779 aa26.2■■□□□ 1.78
DDX41-217ENST00000515562 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.19■■□□□ 1.78
DDX41-217ENST00000515562 PHF23Q9BUL5 403 aaPredicted RBP26.18■■□□□ 1.78
DDX41-217ENST00000515562 CADPS2Q86UW7 1296 aa26.16■■□□□ 1.78
DDX41-217ENST00000515562 C19orf44Q9H6X5 657 aa26.16■■□□□ 1.78
DDX41-217ENST00000515562 METP08581 1390 aa26.15■■□□□ 1.78
DDX41-217ENST00000515562 DCCP43146 1447 aa26.14■■□□□ 1.78
DDX41-217ENST00000515562 PHLPP1O60346 1717 aa26.14■■□□□ 1.78
DDX41-217ENST00000515562 RPGRIP1LQ68CZ1 1315 aa26.14■■□□□ 1.77
DDX41-217ENST00000515562 ATF3P18847 181 aa26.13■■□□□ 1.77
DDX41-217ENST00000515562 ACIN1Q9UKV3 1341 aaKnown RBP26.13■■□□□ 1.77
DDX41-217ENST00000515562 PPLO60437 1756 aa26.12■■□□□ 1.77
DDX41-217ENST00000515562 VGFO15240 615 aaPredicted RBP26.12■■□□□ 1.77
DDX41-217ENST00000515562 CCDC144AA2RUR9 1427 aa26.11■■□□□ 1.77
DDX41-217ENST00000515562 SETD1AO15047 1707 aaKnown RBP26.1■■□□□ 1.77
DDX41-217ENST00000515562 COL16A1Q07092 1604 aaPredicted RBP26.07■■□□□ 1.76
DDX41-217ENST00000515562 FOXD1Q16676 465 aa26.07■■□□□ 1.76
DDX41-217ENST00000515562 MPHOSPH9Q99550 1183 aa26.07■■□□□ 1.76
DDX41-217ENST00000515562 AHDC1Q5TGY3 1603 aaPredicted RBP26.06■■□□□ 1.76
DDX41-217ENST00000515562 PTCH1Q13635 1447 aa26.05■■□□□ 1.76
DDX41-217ENST00000515562 SETD5Q9C0A6 1442 aa26.05■■□□□ 1.76
DDX41-217ENST00000515562 ADGRL3Q9HAR2 1447 aa26.05■■□□□ 1.76
DDX41-217ENST00000515562 JCADQ9P266 1359 aa26.04■■□□□ 1.76
DDX41-217ENST00000515562 PRAG1Q86YV5 1406 aa26.04■■□□□ 1.76
DDX41-217ENST00000515562 NALCNQ8IZF0 1738 aa26.02■■□□□ 1.76
DDX41-217ENST00000515562 SPATA31E1Q6ZUB1 1445 aa26.01■■□□□ 1.75
DDX41-217ENST00000515562 IFT172Q9UG01 1749 aa26■■□□□ 1.75
DDX41-217ENST00000515562 MST1RQ04912 1400 aa26■■□□□ 1.75
DDX41-217ENST00000515562 ASXL1Q8IXJ9 1541 aa25.98■■□□□ 1.75
DDX41-217ENST00000515562 ANKRD30BQ9BXX2 1392 aa25.97■■□□□ 1.75
DDX41-217ENST00000515562 BRINP3Q76B58 766 aa25.97■■□□□ 1.75
DDX41-217ENST00000515562 SHPRHQ149N8 1683 aa25.95■■□□□ 1.74
DDX41-217ENST00000515562 RAB3GAP2Q9H2M9 1393 aa25.95■■□□□ 1.74
DDX41-217ENST00000515562 ROBO2Q9HCK4 1378 aa25.95■■□□□ 1.74
DDX41-217ENST00000515562 NHSL1Q5SYE7 1610 aa25.93■■□□□ 1.74
DDX41-217ENST00000515562 RGS17Q9UGC6 210 aaPredicted RBP25.93■■□□□ 1.74
DDX41-217ENST00000515562 SPATA31A6Q5VVP1 1343 aa25.92■■□□□ 1.74
DDX41-217ENST00000515562 RGL3Q3MIN7 710 aa25.92■■□□□ 1.74
DDX41-217ENST00000515562 ADGRF5Q8IZF2 1346 aa25.9■■□□□ 1.74
DDX41-217ENST00000515562 PIK3C2GO75747 1445 aa25.88■■□□□ 1.73
DDX41-217ENST00000515562 C1orf167Q5SNV9 1468 aa25.87■■□□□ 1.73
DDX41-217ENST00000515562 TECPR2O15040 1411 aa25.86■■□□□ 1.73
DDX41-217ENST00000515562 LRP6O75581 1613 aa25.85■■□□□ 1.73
DDX41-217ENST00000515562 CDC42BPGQ6DT37 1551 aa25.85■■□□□ 1.73
DDX41-217ENST00000515562 KNDC1Q76NI1 1749 aa25.85■■□□□ 1.73
DDX41-217ENST00000515562 MYOM2P54296 1465 aa25.84■■□□□ 1.73
DDX41-217ENST00000515562 LAMC1P11047 1609 aa25.83■■□□□ 1.73
DDX41-217ENST00000515562 LRPPRCP42704 1394 aaKnown RBP25.82■■□□□ 1.72
DDX41-217ENST00000515562 NRXN1Q9ULB1 1477 aa25.81■■□□□ 1.72
DDX41-217ENST00000515562 MEX3CQ5U5Q3 659 aaKnown RBP25.8■■□□□ 1.72
DDX41-217ENST00000515562 POTEAQ6S8J7 498 aa25.79■■□□□ 1.72
DDX41-217ENST00000515562 LRRC59Q96AG4 307 aaKnown RBP25.79■■□□□ 1.72
DDX41-217ENST00000515562 ABCC11Q96J66 1382 aa25.79■■□□□ 1.72
DDX41-217ENST00000515562 HRCP23327 699 aa25.76■■□□□ 1.71
DDX41-217ENST00000515562 YTHDC2Q9H6S0 1430 aaKnown RBP25.76■■□□□ 1.71
DDX41-217ENST00000515562 STK26Q9P289 416 aa25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms