RNA–Protein interactions for RNA: ENST00000508500.1

LMNA-222, Transcript of lamin A/C, humanhuman

TSL 1 (best)

Gene LMNA, Length 848 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-222ENST00000508500 RRBP1Q9P2E9 1410 aaKnown RBP24.85■■□□□ 1.57
LMNA-222ENST00000508500 NUP155O75694 1391 aa24.8■■□□□ 1.56
LMNA-222ENST00000508500 ZFYVE9O95405 1425 aa24.79■■□□□ 1.56
LMNA-222ENST00000508500 NWD1Q149M9 1564 aa24.77■■□□□ 1.56
LMNA-222ENST00000508500 SLC26A8Q96RN1 970 aa24.76■■□□□ 1.55
LMNA-222ENST00000508500 SPHKAPQ2M3C7 1700 aa24.75■■□□□ 1.55
LMNA-222ENST00000508500 CHD2O14647 1828 aaKnown RBP24.75■■□□□ 1.55
LMNA-222ENST00000508500 RIMS2Q9UQ26 1411 aa24.74■■□□□ 1.55
LMNA-222ENST00000508500 NAIPQ13075 1403 aa24.71■■□□□ 1.55
LMNA-222ENST00000508500 SENP3Q9H4L4 574 aaPredicted RBP24.71■■□□□ 1.55
LMNA-222ENST00000508500 FAM135BQ49AJ0 1406 aa24.7■■□□□ 1.55
LMNA-222ENST00000508500 KCNA6P17658 529 aa24.7■■□□□ 1.54
LMNA-222ENST00000508500 PLEKHG1Q9ULL1 1385 aa24.69■■□□□ 1.54
LMNA-222ENST00000508500 TMEM94Q12767 1356 aa24.68■■□□□ 1.54
LMNA-222ENST00000508500 CHGAP10645 457 aaKnown RBP24.68■■□□□ 1.54
LMNA-222ENST00000508500 NKTRP30414 1462 aaKnown RBP24.68■■□□□ 1.54
LMNA-222ENST00000508500 ROBO1Q9Y6N7 1651 aa24.67■■□□□ 1.54
LMNA-222ENST00000508500 NUTM2DQ5VT03 806 aaPredicted RBP24.65■■□□□ 1.54
LMNA-222ENST00000508500 RBM33Q96EV2 1170 aaKnown RBP24.65■■□□□ 1.54
LMNA-222ENST00000508500 ADAMTS13Q76LX8 1427 aa24.63■■□□□ 1.53
LMNA-222ENST00000508500 BCANQ96GW7 911 aa24.63■■□□□ 1.53
LMNA-222ENST00000508500 RGS17Q9UGC6 210 aaPredicted RBP24.62■■□□□ 1.53
LMNA-222ENST00000508500 CLTCL1P53675 1640 aa24.61■■□□□ 1.53
LMNA-222ENST00000508500 PPP1R15AO75807 674 aaPredicted RBP24.61■■□□□ 1.53
LMNA-222ENST00000508500 HDGFP51858 240 aaKnown RBP24.6■■□□□ 1.53
LMNA-222ENST00000508500 PROSER2Q86WR7 435 aaPredicted RBP24.6■■□□□ 1.53
LMNA-222ENST00000508500 HFM1A2PYH4 1435 aa24.6■■□□□ 1.53
LMNA-222ENST00000508500 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.59■■□□□ 1.53
LMNA-222ENST00000508500 TBX22Q9Y458 520 aa24.59■■□□□ 1.53
LMNA-222ENST00000508500 NRXN3Q9Y4C0 1643 aa24.59■■□□□ 1.53
LMNA-222ENST00000508500 KIF1BO60333 1816 aa24.58■■□□□ 1.53
LMNA-222ENST00000508500 PHF23Q9BUL5 403 aaPredicted RBP24.57■■□□□ 1.52
LMNA-222ENST00000508500 DIP2AQ14689 1571 aa24.56■■□□□ 1.52
LMNA-222ENST00000508500 TRPM2O94759 1503 aa24.56■■□□□ 1.52
LMNA-222ENST00000508500 PHLPP1O60346 1717 aa24.51■■□□□ 1.51
LMNA-222ENST00000508500 PTPRUQ92729 1446 aa24.51■■□□□ 1.51
LMNA-222ENST00000508500 NEXMIFQ5QGS0 1516 aa24.51■■□□□ 1.51
LMNA-222ENST00000508500 SETBP1Q9Y6X0 1596 aa24.5■■□□□ 1.51
LMNA-222ENST00000508500 TRIM52Q96A61 297 aa24.49■■□□□ 1.51
LMNA-222ENST00000508500 NCOA3Q9Y6Q9 1424 aa24.49■■□□□ 1.51
LMNA-222ENST00000508500 COL16A1Q07092 1604 aaPredicted RBP24.48■■□□□ 1.51
LMNA-222ENST00000508500 PIK3R4Q99570 1358 aa24.48■■□□□ 1.51
LMNA-222ENST00000508500 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.48■■□□□ 1.51
LMNA-222ENST00000508500 MSH6P52701 1360 aa24.47■■□□□ 1.51
LMNA-222ENST00000508500 XRN1Q8IZH2 1706 aaKnown RBP24.47■■□□□ 1.51
LMNA-222ENST00000508500 ZNF326Q5BKZ1 582 aaKnown RBP24.45■■□□□ 1.5
LMNA-222ENST00000508500 SLAIN2Q9P270 581 aa24.44■■□□□ 1.5
LMNA-222ENST00000508500 AMOTL2Q9Y2J4 779 aa24.43■■□□□ 1.5
LMNA-222ENST00000508500 SETD1AO15047 1707 aaKnown RBP24.42■■□□□ 1.5
LMNA-222ENST00000508500 SLC4A1APQ9BWU0 796 aaKnown RBP24.42■■□□□ 1.5
LMNA-222ENST00000508500 POTEAQ6S8J7 498 aa24.41■■□□□ 1.5
LMNA-222ENST00000508500 PPLO60437 1756 aa24.41■■□□□ 1.5
LMNA-222ENST00000508500 METP08581 1390 aa24.4■■□□□ 1.5
LMNA-222ENST00000508500 AHDC1Q5TGY3 1603 aaPredicted RBP24.39■■□□□ 1.5
LMNA-222ENST00000508500 FOXD1Q16676 465 aa24.39■■□□□ 1.49
LMNA-222ENST00000508500 JCADQ9P266 1359 aa24.36■■□□□ 1.49
LMNA-222ENST00000508500 SHPRHQ149N8 1683 aa24.36■■□□□ 1.49
LMNA-222ENST00000508500 C19orf44Q9H6X5 657 aa24.34■■□□□ 1.49
LMNA-222ENST00000508500 LRP6O75581 1613 aa24.33■■□□□ 1.49
LMNA-222ENST00000508500 C14orf37Q86TY3 774 aa24.32■■□□□ 1.48
LMNA-222ENST00000508500 NALCNQ8IZF0 1738 aa24.31■■□□□ 1.48
LMNA-222ENST00000508500 IFT172Q9UG01 1749 aa24.3■■□□□ 1.48
LMNA-222ENST00000508500 MPHOSPH9Q99550 1183 aa24.3■■□□□ 1.48
LMNA-222ENST00000508500 DCCP43146 1447 aa24.29■■□□□ 1.48
LMNA-222ENST00000508500 CADPS2Q86UW7 1296 aa24.29■■□□□ 1.48
LMNA-222ENST00000508500 RPGRIP1LQ68CZ1 1315 aa24.27■■□□□ 1.48
LMNA-222ENST00000508500 NHSL1Q5SYE7 1610 aa24.26■■□□□ 1.47
LMNA-222ENST00000508500 VGFO15240 615 aaPredicted RBP24.26■■□□□ 1.47
LMNA-222ENST00000508500 ATF3P18847 181 aa24.26■■□□□ 1.47
LMNA-222ENST00000508500 SPATA31E1Q6ZUB1 1445 aa24.25■■□□□ 1.47
LMNA-222ENST00000508500 SPATA31A6Q5VVP1 1343 aa24.24■■□□□ 1.47
LMNA-222ENST00000508500 SETD5Q9C0A6 1442 aa24.24■■□□□ 1.47
LMNA-222ENST00000508500 CCDC144AA2RUR9 1427 aa24.23■■□□□ 1.47
LMNA-222ENST00000508500 MST1RQ04912 1400 aa24.23■■□□□ 1.47
LMNA-222ENST00000508500 ASXL1Q8IXJ9 1541 aa24.22■■□□□ 1.47
LMNA-222ENST00000508500 ADGRL3Q9HAR2 1447 aa24.22■■□□□ 1.47
LMNA-222ENST00000508500 BRINP3Q76B58 766 aa24.21■■□□□ 1.47
LMNA-222ENST00000508500 PRAG1Q86YV5 1406 aa24.19■■□□□ 1.46
LMNA-222ENST00000508500 ROBO2Q9HCK4 1378 aa24.19■■□□□ 1.46
LMNA-222ENST00000508500 ADGRF5Q8IZF2 1346 aa24.19■■□□□ 1.46
LMNA-222ENST00000508500 PTCH1Q13635 1447 aa24.18■■□□□ 1.46
LMNA-222ENST00000508500 LAMC1P11047 1609 aa24.17■■□□□ 1.46
LMNA-222ENST00000508500 RGL3Q3MIN7 710 aa24.17■■□□□ 1.46
LMNA-222ENST00000508500 RAB3GAP2Q9H2M9 1393 aa24.16■■□□□ 1.46
LMNA-222ENST00000508500 ANKRD30BQ9BXX2 1392 aa24.1■■□□□ 1.45
LMNA-222ENST00000508500 KNDC1Q76NI1 1749 aa24.1■■□□□ 1.45
LMNA-222ENST00000508500 ACIN1Q9UKV3 1341 aaKnown RBP24.1■■□□□ 1.45
LMNA-222ENST00000508500 C1orf167Q5SNV9 1468 aa24.09■■□□□ 1.45
LMNA-222ENST00000508500 DDX17Q92841 729 aaKnown RBP24.09■■□□□ 1.45
LMNA-222ENST00000508500 PIK3C2GO75747 1445 aa24.09■■□□□ 1.45
LMNA-222ENST00000508500 ZNF772Q68DY9 489 aaPredicted RBP24.07■■□□□ 1.44
LMNA-222ENST00000508500 CDK12Q9NYV4 1490 aaPredicted RBP24.06■■□□□ 1.44
LMNA-222ENST00000508500 TECPR2O15040 1411 aa24.05■■□□□ 1.44
LMNA-222ENST00000508500 TMEM132EQ6IEE7 984 aa24.04■■□□□ 1.44
LMNA-222ENST00000508500 NRXN1Q9ULB1 1477 aa24.04■■□□□ 1.44
LMNA-222ENST00000508500 PNPLA6Q8IY17 1366 aa24.03■■□□□ 1.44
LMNA-222ENST00000508500 ORAI2Q96SN7 254 aa24.03■■□□□ 1.44
LMNA-222ENST00000508500 CDC42BPGQ6DT37 1551 aa24.03■■□□□ 1.44
LMNA-222ENST00000508500 LRPPRCP42704 1394 aaKnown RBP24.03■■□□□ 1.44
LMNA-222ENST00000508500 STK26Q9P289 416 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms