RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 E9PCH4 1651 aa21.86■■□□□ 1.09
HMGCS1-203ENST00000507004 HSPA1LP34931 641 aa21.86■■□□□ 1.09
HMGCS1-203ENST00000507004 RIMS2Q9UQ26 1411 aa21.86■■□□□ 1.09
HMGCS1-203ENST00000507004 TMEM131LA2VDJ0 1609 aa21.85■■□□□ 1.09
HMGCS1-203ENST00000507004 NKTRP30414 1462 aaKnown RBP21.84■■□□□ 1.09
HMGCS1-203ENST00000507004 SLC26A8Q96RN1 970 aa21.84■■□□□ 1.09
HMGCS1-203ENST00000507004 CHGAP10645 457 aaKnown RBP21.83■■□□□ 1.09
HMGCS1-203ENST00000507004 TBX22Q9Y458 520 aa21.82■■□□□ 1.08
HMGCS1-203ENST00000507004 ALKQ9UM73 1620 aa21.81■■□□□ 1.08
HMGCS1-203ENST00000507004 PROSER2Q86WR7 435 aaPredicted RBP21.81■■□□□ 1.08
HMGCS1-203ENST00000507004 NWD1Q149M9 1564 aa21.8■■□□□ 1.08
HMGCS1-203ENST00000507004 TMEM94Q12767 1356 aa21.8■■□□□ 1.08
HMGCS1-203ENST00000507004 PIK3R4Q99570 1358 aa21.78■■□□□ 1.08
HMGCS1-203ENST00000507004 MYO5BQ9ULV0 1848 aa21.77■■□□□ 1.08
HMGCS1-203ENST00000507004 NAIPQ13075 1403 aa21.77■■□□□ 1.08
HMGCS1-203ENST00000507004 DIP2AQ14689 1571 aa21.76■■□□□ 1.07
HMGCS1-203ENST00000507004 FAM135BQ49AJ0 1406 aa21.76■■□□□ 1.07
HMGCS1-203ENST00000507004 NCOA3Q9Y6Q9 1424 aa21.76■■□□□ 1.07
HMGCS1-203ENST00000507004 MSH6P52701 1360 aa21.74■■□□□ 1.07
HMGCS1-203ENST00000507004 HFM1A2PYH4 1435 aa21.74■■□□□ 1.07
HMGCS1-203ENST00000507004 XIRP1Q702N8 1843 aaKnown RBP21.74■■□□□ 1.07
HMGCS1-203ENST00000507004 SPHKAPQ2M3C7 1700 aa21.73■■□□□ 1.07
HMGCS1-203ENST00000507004 CHD2O14647 1828 aaKnown RBP21.71■■□□□ 1.07
HMGCS1-203ENST00000507004 SOCS7O14512 581 aa21.71■■□□□ 1.07
HMGCS1-203ENST00000507004 ILDR2Q71H61 639 aa21.71■■□□□ 1.07
HMGCS1-203ENST00000507004 ACIN1Q9UKV3 1341 aaKnown RBP21.7■■□□□ 1.06
HMGCS1-203ENST00000507004 ADAMTS13Q76LX8 1427 aa21.7■■□□□ 1.06
HMGCS1-203ENST00000507004 MED1Q15648 1581 aaPredicted RBP21.69■■□□□ 1.06
HMGCS1-203ENST00000507004 TRPM2O94759 1503 aa21.68■■□□□ 1.06
HMGCS1-203ENST00000507004 ZNF326Q5BKZ1 582 aaKnown RBP21.67■■□□□ 1.06
HMGCS1-203ENST00000507004 TRIM52Q96A61 297 aa21.67■■□□□ 1.06
HMGCS1-203ENST00000507004 NUTM2DQ5VT03 806 aaPredicted RBP21.64■■□□□ 1.05
HMGCS1-203ENST00000507004 PHF23Q9BUL5 403 aaPredicted RBP21.64■■□□□ 1.05
HMGCS1-203ENST00000507004 SLAIN2Q9P270 581 aa21.63■■□□□ 1.05
HMGCS1-203ENST00000507004 SETBP1Q9Y6X0 1596 aa21.62■■□□□ 1.05
HMGCS1-203ENST00000507004 C14orf37Q86TY3 774 aa21.62■■□□□ 1.05
HMGCS1-203ENST00000507004 CADPS2Q86UW7 1296 aa21.62■■□□□ 1.05
HMGCS1-203ENST00000507004 SLC4A1APQ9BWU0 796 aaKnown RBP21.62■■□□□ 1.05
HMGCS1-203ENST00000507004 C19orf44Q9H6X5 657 aa21.62■■□□□ 1.05
HMGCS1-203ENST00000507004 AMOTL2Q9Y2J4 779 aa21.61■■□□□ 1.05
HMGCS1-203ENST00000507004 RBM33Q96EV2 1170 aaKnown RBP21.6■■□□□ 1.05
HMGCS1-203ENST00000507004 SENP3Q9H4L4 574 aaPredicted RBP21.6■■□□□ 1.05
HMGCS1-203ENST00000507004 KIF1BO60333 1816 aa21.59■■□□□ 1.05
HMGCS1-203ENST00000507004 RPGRIP1LQ68CZ1 1315 aa21.59■■□□□ 1.05
HMGCS1-203ENST00000507004 ROBO1Q9Y6N7 1651 aa21.59■■□□□ 1.05
HMGCS1-203ENST00000507004 CLTCL1P53675 1640 aa21.58■■□□□ 1.05
HMGCS1-203ENST00000507004 VGFO15240 615 aaPredicted RBP21.58■■□□□ 1.05
HMGCS1-203ENST00000507004 ATF3P18847 181 aa21.58■■□□□ 1.05
HMGCS1-203ENST00000507004 DCCP43146 1447 aa21.55■■□□□ 1.04
HMGCS1-203ENST00000507004 NEXMIFQ5QGS0 1516 aa21.55■■□□□ 1.04
HMGCS1-203ENST00000507004 NRXN3Q9Y4C0 1643 aa21.54■■□□□ 1.04
HMGCS1-203ENST00000507004 PTPRUQ92729 1446 aa21.53■■□□□ 1.04
HMGCS1-203ENST00000507004 XRN1Q8IZH2 1706 aaKnown RBP21.51■■□□□ 1.03
HMGCS1-203ENST00000507004 JCADQ9P266 1359 aa21.5■■□□□ 1.03
HMGCS1-203ENST00000507004 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.49■■□□□ 1.03
HMGCS1-203ENST00000507004 METP08581 1390 aa21.48■■□□□ 1.03
HMGCS1-203ENST00000507004 CCDC144AA2RUR9 1427 aa21.48■■□□□ 1.03
HMGCS1-203ENST00000507004 PHLPP1O60346 1717 aa21.46■■□□□ 1.03
HMGCS1-203ENST00000507004 MPHOSPH9Q99550 1183 aa21.46■■□□□ 1.03
HMGCS1-203ENST00000507004 PTCH1Q13635 1447 aa21.44■■□□□ 1.02
HMGCS1-203ENST00000507004 PRAG1Q86YV5 1406 aa21.44■■□□□ 1.02
HMGCS1-203ENST00000507004 ADGRL3Q9HAR2 1447 aa21.44■■□□□ 1.02
HMGCS1-203ENST00000507004 AHDC1Q5TGY3 1603 aaPredicted RBP21.44■■□□□ 1.02
HMGCS1-203ENST00000507004 SPATA31A6Q5VVP1 1343 aa21.43■■□□□ 1.02
HMGCS1-203ENST00000507004 ANKRD30BQ9BXX2 1392 aa21.42■■□□□ 1.02
HMGCS1-203ENST00000507004 SETD5Q9C0A6 1442 aa21.42■■□□□ 1.02
HMGCS1-203ENST00000507004 COL16A1Q07092 1604 aaPredicted RBP21.4■■□□□ 1.02
HMGCS1-203ENST00000507004 BRINP3Q76B58 766 aa21.4■■□□□ 1.02
HMGCS1-203ENST00000507004 PPLO60437 1756 aa21.4■■□□□ 1.02
HMGCS1-203ENST00000507004 MST1RQ04912 1400 aa21.38■■□□□ 1.01
HMGCS1-203ENST00000507004 FOXD1Q16676 465 aa21.37■■□□□ 1.01
HMGCS1-203ENST00000507004 SPATA31E1Q6ZUB1 1445 aa21.37■■□□□ 1.01
HMGCS1-203ENST00000507004 RGS17Q9UGC6 210 aaPredicted RBP21.36■■□□□ 1.01
HMGCS1-203ENST00000507004 SETD1AO15047 1707 aaKnown RBP21.35■■□□□ 1.01
HMGCS1-203ENST00000507004 ASXL1Q8IXJ9 1541 aa21.34■■□□□ 1.01
HMGCS1-203ENST00000507004 RGL3Q3MIN7 710 aa21.33■■□□□ 1.01
HMGCS1-203ENST00000507004 LRRC59Q96AG4 307 aaKnown RBP21.33■■□□□ 1.01
HMGCS1-203ENST00000507004 SHPRHQ149N8 1683 aa21.32■■□□□ 1
HMGCS1-203ENST00000507004 ROBO2Q9HCK4 1378 aa21.32■■□□□ 1
HMGCS1-203ENST00000507004 NALCNQ8IZF0 1738 aa21.3■■□□□ 1
HMGCS1-203ENST00000507004 HRCP23327 699 aa21.3■■□□□ 1
HMGCS1-203ENST00000507004 MEX3CQ5U5Q3 659 aaKnown RBP21.3■■□□□ 1
HMGCS1-203ENST00000507004 ADGRF5Q8IZF2 1346 aa21.29■■□□□ 1
HMGCS1-203ENST00000507004 C1orf167Q5SNV9 1468 aa21.29■■□□□ 1
HMGCS1-203ENST00000507004 RAB3GAP2Q9H2M9 1393 aa21.29■■□□□ 1
HMGCS1-203ENST00000507004 ZNF772Q68DY9 489 aaPredicted RBP21.29■■□□□ 1
HMGCS1-203ENST00000507004 NHSL1Q5SYE7 1610 aa21.29■■□□□ 1
HMGCS1-203ENST00000507004 TECPR2O15040 1411 aa21.29■■□□□ 1
HMGCS1-203ENST00000507004 LRPPRCP42704 1394 aaKnown RBP21.27■■□□□ 1
HMGCS1-203ENST00000507004 ABCC11Q96J66 1382 aa21.27■■□□□ 1
HMGCS1-203ENST00000507004 PIK3C2GO75747 1445 aa21.27■■□□□ 1
HMGCS1-203ENST00000507004 IFT172Q9UG01 1749 aa21.26■□□□□ 0.99
HMGCS1-203ENST00000507004 POTEAQ6S8J7 498 aa21.25■□□□□ 0.99
HMGCS1-203ENST00000507004 SIRT1Q96EB6 747 aa21.25■□□□□ 0.99
HMGCS1-203ENST00000507004 STAC3Q96MF2 364 aa21.24■□□□□ 0.99
HMGCS1-203ENST00000507004 MYOM2P54296 1465 aa21.23■□□□□ 0.99
HMGCS1-203ENST00000507004 CDC42BPGQ6DT37 1551 aa21.23■□□□□ 0.99
HMGCS1-203ENST00000507004 LRP6O75581 1613 aa21.22■□□□□ 0.99
HMGCS1-203ENST00000507004 C14orf93Q9H972 538 aaKnown RBP21.22■□□□□ 0.99
HMGCS1-203ENST00000507004 LAMC1P11047 1609 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 226.9 ms