RNA–Protein interactions for RNA: ENST00000504327.1

PDLIM1P4-201, Transcript of PDZ and LIM domain 1 pseudogene 4, humanhuman

BASIC

Gene PDLIM1P4, Length 1,006 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1P4-201ENST00000504327 PHOX2BQ99453 314 aa8.91□□□□□ -0.98
PDLIM1P4-201ENST00000504327 SLF2Q8IX21 1173 aa8.9□□□□□ -0.98
PDLIM1P4-201ENST00000504327 CCDC102AQ96A19 550 aa8.89□□□□□ -0.99
PDLIM1P4-201ENST00000504327 MINK1Q8N4C8 1332 aaPredicted RBP8.88□□□□□ -0.99
PDLIM1P4-201ENST00000504327 IRF6O14896 467 aa8.88□□□□□ -0.99
PDLIM1P4-201ENST00000504327 ZMYND10O75800 440 aa8.88□□□□□ -0.99
PDLIM1P4-201ENST00000504327 NYAP1Q6ZVC0 841 aa8.88□□□□□ -0.99
PDLIM1P4-201ENST00000504327 PLA2G2EQ9NZK7 142 aa8.87□□□□□ -0.99
PDLIM1P4-201ENST00000504327 SLC4A3P48751 1232 aa8.86□□□□□ -0.99
PDLIM1P4-201ENST00000504327 APLP1P51693 650 aa8.86□□□□□ -0.99
PDLIM1P4-201ENST00000504327 BARGINQ6ZT62 677 aa8.86□□□□□ -0.99
PDLIM1P4-201ENST00000504327 SLC10A3P09131 477 aa8.84□□□□□ -0.99
PDLIM1P4-201ENST00000504327 KRI1Q8N9T8 703 aaKnown RBP8.84□□□□□ -0.99
PDLIM1P4-201ENST00000504327 NECTIN2Q92692 538 aa8.83□□□□□ -1
PDLIM1P4-201ENST00000504327 CFHP08603 1231 aa8.82□□□□□ -1
PDLIM1P4-201ENST00000504327 DAXXQ9UER7 740 aaPredicted RBP8.82□□□□□ -1
PDLIM1P4-201ENST00000504327 DDX11L8A8MPP1 907 aa8.81□□□□□ -1
PDLIM1P4-201ENST00000504327 ITGBL1O95965 494 aaPredicted RBP8.81□□□□□ -1
PDLIM1P4-201ENST00000504327 MDM2Q00987 491 aaPredicted RBP8.81□□□□□ -1
PDLIM1P4-201ENST00000504327 RDH13Q8NBN7 331 aa8.8□□□□□ -1
PDLIM1P4-201ENST00000504327 MTRQ99707 1265 aa8.79□□□□□ -1
PDLIM1P4-201ENST00000504327 KMT5BQ4FZB7 885 aa8.78□□□□□ -1
PDLIM1P4-201ENST00000504327 TJAP1Q5JTD0 557 aa8.78□□□□□ -1
PDLIM1P4-201ENST00000504327 COPS2P61201 443 aa8.77□□□□□ -1.01
PDLIM1P4-201ENST00000504327 KCNC4Q03721 635 aa8.76□□□□□ -1.01
PDLIM1P4-201ENST00000504327 SULF1Q8IWU6 871 aa8.76□□□□□ -1.01
PDLIM1P4-201ENST00000504327 PRR14Q9BWN1 585 aa8.76□□□□□ -1.01
PDLIM1P4-201ENST00000504327 PCDHB3Q9Y5E6 796 aa8.76□□□□□ -1.01
PDLIM1P4-201ENST00000504327 ACTN4O43707 911 aaKnown RBP8.75□□□□□ -1.01
PDLIM1P4-201ENST00000504327 RSPH4AQ5TD94 716 aa8.75□□□□□ -1.01
PDLIM1P4-201ENST00000504327 BLOC1S3Q6QNY0 202 aa8.75□□□□□ -1.01
PDLIM1P4-201ENST00000504327 REPIN1Q9BWE0 567 aaKnown RBP8.75□□□□□ -1.01
PDLIM1P4-201ENST00000504327 IL21Q9HBE4 155 aa8.75□□□□□ -1.01
PDLIM1P4-201ENST00000504327 SLC24A3Q9HC58 644 aa8.75□□□□□ -1.01
PDLIM1P4-201ENST00000504327 GPCPD1Q9NPB8 672 aa8.75□□□□□ -1.01
PDLIM1P4-201ENST00000504327 CLCN1P35523 988 aa8.74□□□□□ -1.01
PDLIM1P4-201ENST00000504327 IFFO2Q5TF58 517 aa8.74□□□□□ -1.01
PDLIM1P4-201ENST00000504327 ZNF516Q92618 1163 aa8.74□□□□□ -1.01
PDLIM1P4-201ENST00000504327 TMUB1Q9BVT8 246 aa8.74□□□□□ -1.01
PDLIM1P4-201ENST00000504327 TRIM66O15016 1216 aa8.73□□□□□ -1.01
PDLIM1P4-201ENST00000504327 CD46P15529 392 aa8.73□□□□□ -1.01
PDLIM1P4-201ENST00000504327 TTLL12Q14166 644 aaPredicted RBP8.73□□□□□ -1.01
PDLIM1P4-201ENST00000504327 AMHR2Q16671 573 aa8.73□□□□□ -1.01
PDLIM1P4-201ENST00000504327 AK7Q96M32 723 aa8.73□□□□□ -1.01
PDLIM1P4-201ENST00000504327 GCGRP47871 477 aa8.72□□□□□ -1.01
PDLIM1P4-201ENST00000504327 PUS10Q3MIT2 529 aaKnown RBP8.72□□□□□ -1.01
PDLIM1P4-201ENST00000504327 FAM217BQ9NTX9 383 aaPredicted RBP8.72□□□□□ -1.01
PDLIM1P4-201ENST00000504327 A0A0G2JS52 829 aa8.71□□□□□ -1.02
PDLIM1P4-201ENST00000504327 FUT2Q10981 343 aa8.71□□□□□ -1.02
PDLIM1P4-201ENST00000504327 TLL1O43897 1013 aa8.7□□□□□ -1.02
PDLIM1P4-201ENST00000504327 ZPR1O75312 459 aa8.69□□□□□ -1.02
PDLIM1P4-201ENST00000504327 GIGYF2Q6Y7W6 1299 aaKnown RBP8.69□□□□□ -1.02
PDLIM1P4-201ENST00000504327 PARP9Q8IXQ6 854 aa8.69□□□□□ -1.02
PDLIM1P4-201ENST00000504327 NKX2-3Q8TAU0 364 aa8.69□□□□□ -1.02
PDLIM1P4-201ENST00000504327 SSTR3P32745 418 aaPredicted RBP8.66□□□□□ -1.02
PDLIM1P4-201ENST00000504327 PDE4DQ08499 809 aa8.66□□□□□ -1.02
PDLIM1P4-201ENST00000504327 MORN1Q5T089 497 aa8.66□□□□□ -1.02
PDLIM1P4-201ENST00000504327 KDM4AO75164 1064 aa8.65□□□□□ -1.02
PDLIM1P4-201ENST00000504327 NR1I2O75469 434 aa8.65□□□□□ -1.02
PDLIM1P4-201ENST00000504327 ATP6V1AP38606 617 aa8.65□□□□□ -1.02
PDLIM1P4-201ENST00000504327 HLA-CQ95604 372 aa8.64□□□□□ -1.03
PDLIM1P4-201ENST00000504327 MS4A1P11836 297 aa8.63□□□□□ -1.03
PDLIM1P4-201ENST00000504327 SCUBE3Q8IX30 993 aa8.63□□□□□ -1.03
PDLIM1P4-201ENST00000504327 SLC27A5Q9Y2P5 690 aa8.63□□□□□ -1.03
PDLIM1P4-201ENST00000504327 PPP1R18Q6NYC8 613 aa8.62□□□□□ -1.03
PDLIM1P4-201ENST00000504327 HOXA2O43364 376 aa8.61□□□□□ -1.03
PDLIM1P4-201ENST00000504327 ADH1BP00325 375 aa8.61□□□□□ -1.03
PDLIM1P4-201ENST00000504327 GUCA2AQ02747 115 aa8.61□□□□□ -1.03
PDLIM1P4-201ENST00000504327 TPRNQ4KMQ1 711 aa8.61□□□□□ -1.03
PDLIM1P4-201ENST00000504327 GRIPAP1Q4V328 841 aa8.61□□□□□ -1.03
PDLIM1P4-201ENST00000504327 NUTM1Q86Y26 1132 aa8.61□□□□□ -1.03
PDLIM1P4-201ENST00000504327 BEGAINQ9BUH8 593 aa8.61□□□□□ -1.03
PDLIM1P4-201ENST00000504327 USP46P62068 366 aa8.6□□□□□ -1.03
PDLIM1P4-201ENST00000504327 S1PR4O95977 384 aa8.59□□□□□ -1.03
PDLIM1P4-201ENST00000504327 RNF19BQ6ZMZ0 732 aa8.59□□□□□ -1.03
PDLIM1P4-201ENST00000504327 THAP11Q96EK4 314 aa8.59□□□□□ -1.03
PDLIM1P4-201ENST00000504327 SPSB2Q99619 263 aa8.59□□□□□ -1.03
PDLIM1P4-201ENST00000504327 SPIRE2Q8WWL2 714 aa8.58□□□□□ -1.04
PDLIM1P4-201ENST00000504327 GPBP1L1Q9HC44 474 aaPredicted RBP8.58□□□□□ -1.04
PDLIM1P4-201ENST00000504327 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.58□□□□□ -1.04
PDLIM1P4-201ENST00000504327 FMNL1O95466 1100 aaPredicted RBP8.57□□□□□ -1.04
PDLIM1P4-201ENST00000504327 PPEF1O14829 653 aaPredicted RBP8.56□□□□□ -1.04
PDLIM1P4-201ENST00000504327 GGCXP38435 758 aa8.56□□□□□ -1.04
PDLIM1P4-201ENST00000504327 BRICD5Q6PL45 260 aa8.56□□□□□ -1.04
PDLIM1P4-201ENST00000504327 SLC6A16Q9GZN6 736 aa8.56□□□□□ -1.04
PDLIM1P4-201ENST00000504327 PRDM9Q9NQV7 894 aa8.56□□□□□ -1.04
PDLIM1P4-201ENST00000504327 MOXD2PA6NHM9 499 aa8.55□□□□□ -1.04
PDLIM1P4-201ENST00000504327 RNF223E7ERA6 249 aa8.55□□□□□ -1.04
PDLIM1P4-201ENST00000504327 NDUFV2P19404 249 aa8.55□□□□□ -1.04
PDLIM1P4-201ENST00000504327 TBC1D2Q9BYX2 928 aa8.55□□□□□ -1.04
PDLIM1P4-201ENST00000504327 RGS20O76081 388 aa8.54□□□□□ -1.04
PDLIM1P4-201ENST00000504327 Q3C1V9 767 aa8.54□□□□□ -1.04
PDLIM1P4-201ENST00000504327 FAM160A2Q8N612 972 aaPredicted RBP8.54□□□□□ -1.04
PDLIM1P4-201ENST00000504327 KDM4CQ9H3R0 1056 aa8.54□□□□□ -1.04
PDLIM1P4-201ENST00000504327 SALL2Q9Y467 1007 aaPredicted RBP8.54□□□□□ -1.04
PDLIM1P4-201ENST00000504327 FDX1P10109 184 aa8.53□□□□□ -1.04
PDLIM1P4-201ENST00000504327 SYMPKQ92797 1274 aaKnown RBP8.53□□□□□ -1.04
PDLIM1P4-201ENST00000504327 PCDHGC3Q9UN70 934 aa8.53□□□□□ -1.04
PDLIM1P4-201ENST00000504327 MSS51Q4VC12 460 aa8.51□□□□□ -1.05
PDLIM1P4-201ENST00000504327 PRKD2Q9BZL6 878 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms