RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 PCDHB3Q9Y5E6 796 aa7.59□□□□□ -1.19
HMGB3P17-201ENST00000504195 GMPR2Q9P2T1 348 aaKnown RBP7.58□□□□□ -1.2
HMGB3P17-201ENST00000504195 LIAT1Q6ZQX7 453 aa7.57□□□□□ -1.2
HMGB3P17-201ENST00000504195 NUDT18Q6ZVK8 323 aa7.57□□□□□ -1.2
HMGB3P17-201ENST00000504195 CRIPAKQ8N1N5 446 aa7.57□□□□□ -1.2
HMGB3P17-201ENST00000504195 AXIN1O15169 862 aa7.56□□□□□ -1.2
HMGB3P17-201ENST00000504195 FAM198AQ9UFP1 575 aa7.56□□□□□ -1.2
HMGB3P17-201ENST00000504195 PPEF1O14829 653 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P17-201ENST00000504195 C3orf80F5H4A9 247 aa7.54□□□□□ -1.2
HMGB3P17-201ENST00000504195 TLL1O43897 1013 aa7.54□□□□□ -1.2
HMGB3P17-201ENST00000504195 S1PR4O95977 384 aa7.54□□□□□ -1.2
HMGB3P17-201ENST00000504195 SWT1Q5T5J6 900 aaKnown RBP7.54□□□□□ -1.2
HMGB3P17-201ENST00000504195 LMOD2Q6P5Q4 547 aa7.54□□□□□ -1.2
HMGB3P17-201ENST00000504195 FOXC1Q12948 553 aa7.53□□□□□ -1.2
HMGB3P17-201ENST00000504195 BLOC1S3Q6QNY0 202 aa7.53□□□□□ -1.2
HMGB3P17-201ENST00000504195 DACH1Q9UI36 760 aa7.53□□□□□ -1.2
HMGB3P17-201ENST00000504195 CTC1Q2NKJ3 1217 aa7.52□□□□□ -1.21
HMGB3P17-201ENST00000504195 CAMK2BQ13554 666 aa7.51□□□□□ -1.21
HMGB3P17-201ENST00000504195 RBM27Q9P2N5 1060 aaKnown RBP7.5□□□□□ -1.21
HMGB3P17-201ENST00000504195 TERTO14746 1132 aaKnown RBP7.49□□□□□ -1.21
HMGB3P17-201ENST00000504195 AVPP01185 164 aa7.49□□□□□ -1.21
HMGB3P17-201ENST00000504195 SUZ12Q15022 739 aaKnown RBP7.48□□□□□ -1.21
HMGB3P17-201ENST00000504195 CYP4X1Q8N118 509 aa7.48□□□□□ -1.21
HMGB3P17-201ENST00000504195 GTPBP6O43824 516 aaPredicted RBP7.46□□□□□ -1.22
HMGB3P17-201ENST00000504195 ADH1BP00325 375 aa7.46□□□□□ -1.22
HMGB3P17-201ENST00000504195 PKD2L1Q9P0L9 805 aa7.46□□□□□ -1.22
HMGB3P17-201ENST00000504195 SMCPP49901 116 aaPredicted RBP7.45□□□□□ -1.22
HMGB3P17-201ENST00000504195 PDIA6Q15084 440 aa7.45□□□□□ -1.22
HMGB3P17-201ENST00000504195 SLC6A16Q9GZN6 736 aa7.45□□□□□ -1.22
HMGB3P17-201ENST00000504195 KMT5BQ4FZB7 885 aa7.44□□□□□ -1.22
HMGB3P17-201ENST00000504195 SLC16A10Q8TF71 515 aa7.44□□□□□ -1.22
HMGB3P17-201ENST00000504195 SENP2Q9HC62 589 aa7.44□□□□□ -1.22
HMGB3P17-201ENST00000504195 SPDYE16A6NNV3 312 aaPredicted RBP7.43□□□□□ -1.22
HMGB3P17-201ENST00000504195 PLA2G2CQ5R387 149 aa7.43□□□□□ -1.22
HMGB3P17-201ENST00000504195 LCE2CQ5TA81 110 aa7.43□□□□□ -1.22
HMGB3P17-201ENST00000504195 ZSCAN1Q8NBB4 408 aa7.43□□□□□ -1.22
HMGB3P17-201ENST00000504195 CDHR5Q9HBB8 845 aa7.42□□□□□ -1.22
HMGB3P17-201ENST00000504195 TOR4AQ9NXH8 423 aa7.42□□□□□ -1.22
HMGB3P17-201ENST00000504195 GRXCR2A6NFK2 248 aa7.41□□□□□ -1.22
HMGB3P17-201ENST00000504195 NR1I2O75469 434 aa7.41□□□□□ -1.22
HMGB3P17-201ENST00000504195 SNRPBP14678 240 aaKnown RBP7.41□□□□□ -1.22
HMGB3P17-201ENST00000504195 CADPS2Q86UW7 1296 aa7.41□□□□□ -1.22
HMGB3P17-201ENST00000504195 ATP13A2Q9NQ11 1180 aa7.41□□□□□ -1.22
HMGB3P17-201ENST00000504195 TTC24A2A3L6 582 aaPredicted RBP7.4□□□□□ -1.22
HMGB3P17-201ENST00000504195 PADI6Q6TGC4 694 aa7.4□□□□□ -1.22
HMGB3P17-201ENST00000504195 TRIM47Q96LD4 638 aa7.4□□□□□ -1.22
HMGB3P17-201ENST00000504195 ACTN4O43707 911 aaKnown RBP7.39□□□□□ -1.23
HMGB3P17-201ENST00000504195 CD2BP2O95400 341 aaKnown RBP7.38□□□□□ -1.23
HMGB3P17-201ENST00000504195 RPIAP49247 311 aa7.38□□□□□ -1.23
HMGB3P17-201ENST00000504195 KIFC2Q96AC6 838 aa7.38□□□□□ -1.23
HMGB3P17-201ENST00000504195 CFHP08603 1231 aa7.36□□□□□ -1.23
HMGB3P17-201ENST00000504195 PRIM1P49642 420 aaKnown RBP7.36□□□□□ -1.23
HMGB3P17-201ENST00000504195 TTC13Q8NBP0 860 aa7.35□□□□□ -1.23
HMGB3P17-201ENST00000504195 IRF7Q92985 503 aa7.35□□□□□ -1.23
HMGB3P17-201ENST00000504195 DNAJB2P25686 324 aa7.34□□□□□ -1.23
HMGB3P17-201ENST00000504195 GMPRP36959 345 aa7.34□□□□□ -1.23
HMGB3P17-201ENST00000504195 EYA1Q99502 592 aa7.33□□□□□ -1.24
HMGB3P17-201ENST00000504195 SPSB2Q99619 263 aa7.32□□□□□ -1.24
HMGB3P17-201ENST00000504195 NXF1Q9UBU9 619 aaKnown RBP7.32□□□□□ -1.24
HMGB3P17-201ENST00000504195 FCF1Q9Y324 198 aaKnown RBP7.31□□□□□ -1.24
HMGB3P17-201ENST00000504195 ZBTB24O43167 697 aaPredicted RBP7.3□□□□□ -1.24
HMGB3P17-201ENST00000504195 OSBPP22059 807 aa7.29□□□□□ -1.24
HMGB3P17-201ENST00000504195 SNIP1Q8TAD8 396 aaKnown RBP7.29□□□□□ -1.24
HMGB3P17-201ENST00000504195 SMPD1P17405 629 aa7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 LORP23490 312 aaPredicted RBP7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 SCUBE3Q8IX30 993 aa7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 NPAS3Q8IXF0 933 aa7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 RBM46Q8TBY0 533 aaKnown RBP7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 TMEM134Q9H6X4 195 aa7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 KCTD17Q8N5Z5 321 aa7.27□□□□□ -1.25
HMGB3P17-201ENST00000504195 NPDC1Q9NQX5 325 aaPredicted RBP7.25□□□□□ -1.25
HMGB3P17-201ENST00000504195 WNT7AO00755 349 aa7.24□□□□□ -1.25
HMGB3P17-201ENST00000504195 PUS10Q3MIT2 529 aaKnown RBP7.24□□□□□ -1.25
HMGB3P17-201ENST00000504195 VEGFBP49765 207 aa7.23□□□□□ -1.25
HMGB3P17-201ENST00000504195 J3QL48 77 aa7.22□□□□□ -1.25
HMGB3P17-201ENST00000504195 KCNMA1Q12791 1236 aa7.22□□□□□ -1.25
HMGB3P17-201ENST00000504195 RSPH4AQ5TD94 716 aa7.22□□□□□ -1.25
HMGB3P17-201ENST00000504195 H3BM21 787 aa7.21□□□□□ -1.26
HMGB3P17-201ENST00000504195 HPS1Q92902 700 aa7.21□□□□□ -1.26
HMGB3P17-201ENST00000504195 REPIN1Q9BWE0 567 aaKnown RBP7.21□□□□□ -1.26
HMGB3P17-201ENST00000504195 RCCD1A6NED2 376 aa7.2□□□□□ -1.26
HMGB3P17-201ENST00000504195 SLC10A3P09131 477 aa7.2□□□□□ -1.26
HMGB3P17-201ENST00000504195 E2F4Q16254 413 aa7.2□□□□□ -1.26
HMGB3P17-201ENST00000504195 MRGPRX2Q96LB1 330 aa7.2□□□□□ -1.26
HMGB3P17-201ENST00000504195 DCAF8L2P0C7V8 631 aa7.19□□□□□ -1.26
HMGB3P17-201ENST00000504195 TMEM151AQ8N4L1 468 aa7.19□□□□□ -1.26
HMGB3P17-201ENST00000504195 ERBB4Q15303 1308 aa7.18□□□□□ -1.26
HMGB3P17-201ENST00000504195 RNF225M0QZC1 329 aaPredicted RBP7.17□□□□□ -1.26
HMGB3P17-201ENST00000504195 FMNL1O95466 1100 aaPredicted RBP7.17□□□□□ -1.26
HMGB3P17-201ENST00000504195 TRIM32Q13049 653 aa7.17□□□□□ -1.26
HMGB3P17-201ENST00000504195 ARIH1Q9Y4X5 557 aaPredicted RBP7.17□□□□□ -1.26
HMGB3P17-201ENST00000504195 GDF11O95390 407 aa7.16□□□□□ -1.26
HMGB3P17-201ENST00000504195 ADGRG1Q9Y653 693 aa7.16□□□□□ -1.26
HMGB3P17-201ENST00000504195 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.15□□□□□ -1.26
HMGB3P17-201ENST00000504195 PRDM9Q9NQV7 894 aa7.15□□□□□ -1.26
HMGB3P17-201ENST00000504195 BMP1P13497 986 aa7.14□□□□□ -1.27
HMGB3P17-201ENST00000504195 RASSF7Q02833 373 aa7.12□□□□□ -1.27
HMGB3P17-201ENST00000504195 FAM160A2Q8N612 972 aaPredicted RBP7.12□□□□□ -1.27
HMGB3P17-201ENST00000504195 THAP11Q96EK4 314 aa7.12□□□□□ -1.27
HMGB3P17-201ENST00000504195 WDR70Q9NW82 654 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms