RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 PCDHB3Q9Y5E6 796 aa7.59□□□□□ -1.19
HMGB3P17-201ENST00000504195 GMPR2Q9P2T1 348 aaKnown RBP7.58□□□□□ -1.2
HMGB3P17-201ENST00000504195 LIAT1Q6ZQX7 453 aa7.57□□□□□ -1.2
HMGB3P17-201ENST00000504195 NUDT18Q6ZVK8 323 aa7.57□□□□□ -1.2
HMGB3P17-201ENST00000504195 CRIPAKQ8N1N5 446 aa7.57□□□□□ -1.2
HMGB3P17-201ENST00000504195 AXIN1O15169 862 aa7.56□□□□□ -1.2
HMGB3P17-201ENST00000504195 FAM198AQ9UFP1 575 aa7.56□□□□□ -1.2
HMGB3P17-201ENST00000504195 PPEF1O14829 653 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P17-201ENST00000504195 C3orf80F5H4A9 247 aa7.54□□□□□ -1.2
HMGB3P17-201ENST00000504195 TLL1O43897 1013 aa7.54□□□□□ -1.2
HMGB3P17-201ENST00000504195 S1PR4O95977 384 aa7.54□□□□□ -1.2
HMGB3P17-201ENST00000504195 SWT1Q5T5J6 900 aaKnown RBP7.54□□□□□ -1.2
HMGB3P17-201ENST00000504195 LMOD2Q6P5Q4 547 aa7.54□□□□□ -1.2
HMGB3P17-201ENST00000504195 FOXC1Q12948 553 aa7.53□□□□□ -1.2
HMGB3P17-201ENST00000504195 BLOC1S3Q6QNY0 202 aa7.53□□□□□ -1.2
HMGB3P17-201ENST00000504195 DACH1Q9UI36 760 aa7.53□□□□□ -1.2
HMGB3P17-201ENST00000504195 CTC1Q2NKJ3 1217 aa7.52□□□□□ -1.21
HMGB3P17-201ENST00000504195 CAMK2BQ13554 666 aa7.51□□□□□ -1.21
HMGB3P17-201ENST00000504195 RBM27Q9P2N5 1060 aaKnown RBP7.5□□□□□ -1.21
HMGB3P17-201ENST00000504195 TERTO14746 1132 aaKnown RBP7.49□□□□□ -1.21
HMGB3P17-201ENST00000504195 AVPP01185 164 aa7.49□□□□□ -1.21
HMGB3P17-201ENST00000504195 SUZ12Q15022 739 aaKnown RBP7.48□□□□□ -1.21
HMGB3P17-201ENST00000504195 CYP4X1Q8N118 509 aa7.48□□□□□ -1.21
HMGB3P17-201ENST00000504195 GTPBP6O43824 516 aaPredicted RBP7.46□□□□□ -1.22
HMGB3P17-201ENST00000504195 ADH1BP00325 375 aa7.46□□□□□ -1.22
HMGB3P17-201ENST00000504195 PKD2L1Q9P0L9 805 aa7.46□□□□□ -1.22
HMGB3P17-201ENST00000504195 SMCPP49901 116 aaPredicted RBP7.45□□□□□ -1.22
HMGB3P17-201ENST00000504195 PDIA6Q15084 440 aa7.45□□□□□ -1.22
HMGB3P17-201ENST00000504195 SLC6A16Q9GZN6 736 aa7.45□□□□□ -1.22
HMGB3P17-201ENST00000504195 KMT5BQ4FZB7 885 aa7.44□□□□□ -1.22
HMGB3P17-201ENST00000504195 SLC16A10Q8TF71 515 aa7.44□□□□□ -1.22
HMGB3P17-201ENST00000504195 SENP2Q9HC62 589 aa7.44□□□□□ -1.22
HMGB3P17-201ENST00000504195 SPDYE16A6NNV3 312 aaPredicted RBP7.43□□□□□ -1.22
HMGB3P17-201ENST00000504195 PLA2G2CQ5R387 149 aa7.43□□□□□ -1.22
HMGB3P17-201ENST00000504195 LCE2CQ5TA81 110 aa7.43□□□□□ -1.22
HMGB3P17-201ENST00000504195 ZSCAN1Q8NBB4 408 aa7.43□□□□□ -1.22
HMGB3P17-201ENST00000504195 CDHR5Q9HBB8 845 aa7.42□□□□□ -1.22
HMGB3P17-201ENST00000504195 TOR4AQ9NXH8 423 aa7.42□□□□□ -1.22
HMGB3P17-201ENST00000504195 GRXCR2A6NFK2 248 aa7.41□□□□□ -1.22
HMGB3P17-201ENST00000504195 NR1I2O75469 434 aa7.41□□□□□ -1.22
HMGB3P17-201ENST00000504195 SNRPBP14678 240 aaKnown RBP7.41□□□□□ -1.22
HMGB3P17-201ENST00000504195 CADPS2Q86UW7 1296 aa7.41□□□□□ -1.22
HMGB3P17-201ENST00000504195 ATP13A2Q9NQ11 1180 aa7.41□□□□□ -1.22
HMGB3P17-201ENST00000504195 TTC24A2A3L6 582 aaPredicted RBP7.4□□□□□ -1.22
HMGB3P17-201ENST00000504195 PADI6Q6TGC4 694 aa7.4□□□□□ -1.22
HMGB3P17-201ENST00000504195 TRIM47Q96LD4 638 aa7.4□□□□□ -1.22
HMGB3P17-201ENST00000504195 ACTN4O43707 911 aaKnown RBP7.39□□□□□ -1.23
HMGB3P17-201ENST00000504195 CD2BP2O95400 341 aaKnown RBP7.38□□□□□ -1.23
HMGB3P17-201ENST00000504195 RPIAP49247 311 aa7.38□□□□□ -1.23
HMGB3P17-201ENST00000504195 KIFC2Q96AC6 838 aa7.38□□□□□ -1.23
HMGB3P17-201ENST00000504195 CFHP08603 1231 aa7.36□□□□□ -1.23
HMGB3P17-201ENST00000504195 PRIM1P49642 420 aaKnown RBP7.36□□□□□ -1.23
HMGB3P17-201ENST00000504195 TTC13Q8NBP0 860 aa7.35□□□□□ -1.23
HMGB3P17-201ENST00000504195 IRF7Q92985 503 aa7.35□□□□□ -1.23
HMGB3P17-201ENST00000504195 DNAJB2P25686 324 aa7.34□□□□□ -1.23
HMGB3P17-201ENST00000504195 GMPRP36959 345 aa7.34□□□□□ -1.23
HMGB3P17-201ENST00000504195 EYA1Q99502 592 aa7.33□□□□□ -1.24
HMGB3P17-201ENST00000504195 SPSB2Q99619 263 aa7.32□□□□□ -1.24
HMGB3P17-201ENST00000504195 NXF1Q9UBU9 619 aaKnown RBP7.32□□□□□ -1.24
HMGB3P17-201ENST00000504195 FCF1Q9Y324 198 aaKnown RBP7.31□□□□□ -1.24
HMGB3P17-201ENST00000504195 ZBTB24O43167 697 aaPredicted RBP7.3□□□□□ -1.24
HMGB3P17-201ENST00000504195 OSBPP22059 807 aa7.29□□□□□ -1.24
HMGB3P17-201ENST00000504195 SNIP1Q8TAD8 396 aaKnown RBP7.29□□□□□ -1.24
HMGB3P17-201ENST00000504195 SMPD1P17405 629 aa7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 LORP23490 312 aaPredicted RBP7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 SCUBE3Q8IX30 993 aa7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 NPAS3Q8IXF0 933 aa7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 RBM46Q8TBY0 533 aaKnown RBP7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 TMEM134Q9H6X4 195 aa7.28□□□□□ -1.24
HMGB3P17-201ENST00000504195 KCTD17Q8N5Z5 321 aa7.27□□□□□ -1.25
HMGB3P17-201ENST00000504195 NPDC1Q9NQX5 325 aaPredicted RBP7.25□□□□□ -1.25
HMGB3P17-201ENST00000504195 WNT7AO00755 349 aa7.24□□□□□ -1.25
HMGB3P17-201ENST00000504195 PUS10Q3MIT2 529 aaKnown RBP7.24□□□□□ -1.25
HMGB3P17-201ENST00000504195 VEGFBP49765 207 aa7.23□□□□□ -1.25
HMGB3P17-201ENST00000504195 J3QL48 77 aa7.22□□□□□ -1.25
HMGB3P17-201ENST00000504195 KCNMA1Q12791 1236 aa7.22□□□□□ -1.25
HMGB3P17-201ENST00000504195 RSPH4AQ5TD94 716 aa7.22□□□□□ -1.25
HMGB3P17-201ENST00000504195 H3BM21 787 aa7.21□□□□□ -1.26
HMGB3P17-201ENST00000504195 HPS1Q92902 700 aa7.21□□□□□ -1.26
HMGB3P17-201ENST00000504195 REPIN1Q9BWE0 567 aaKnown RBP7.21□□□□□ -1.26
HMGB3P17-201ENST00000504195 RCCD1A6NED2 376 aa7.2□□□□□ -1.26
HMGB3P17-201ENST00000504195 SLC10A3P09131 477 aa7.2□□□□□ -1.26
HMGB3P17-201ENST00000504195 E2F4Q16254 413 aa7.2□□□□□ -1.26
HMGB3P17-201ENST00000504195 MRGPRX2Q96LB1 330 aa7.2□□□□□ -1.26
HMGB3P17-201ENST00000504195 DCAF8L2P0C7V8 631 aa7.19□□□□□ -1.26
HMGB3P17-201ENST00000504195 TMEM151AQ8N4L1 468 aa7.19□□□□□ -1.26
HMGB3P17-201ENST00000504195 ERBB4Q15303 1308 aa7.18□□□□□ -1.26
HMGB3P17-201ENST00000504195 RNF225M0QZC1 329 aaPredicted RBP7.17□□□□□ -1.26
HMGB3P17-201ENST00000504195 FMNL1O95466 1100 aaPredicted RBP7.17□□□□□ -1.26
HMGB3P17-201ENST00000504195 TRIM32Q13049 653 aa7.17□□□□□ -1.26
HMGB3P17-201ENST00000504195 ARIH1Q9Y4X5 557 aaPredicted RBP7.17□□□□□ -1.26
HMGB3P17-201ENST00000504195 GDF11O95390 407 aa7.16□□□□□ -1.26
HMGB3P17-201ENST00000504195 ADGRG1Q9Y653 693 aa7.16□□□□□ -1.26
HMGB3P17-201ENST00000504195 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.15□□□□□ -1.26
HMGB3P17-201ENST00000504195 PRDM9Q9NQV7 894 aa7.15□□□□□ -1.26
HMGB3P17-201ENST00000504195 BMP1P13497 986 aa7.14□□□□□ -1.27
HMGB3P17-201ENST00000504195 RASSF7Q02833 373 aa7.12□□□□□ -1.27
HMGB3P17-201ENST00000504195 FAM160A2Q8N612 972 aaPredicted RBP7.12□□□□□ -1.27
HMGB3P17-201ENST00000504195 THAP11Q96EK4 314 aa7.12□□□□□ -1.27
HMGB3P17-201ENST00000504195 WDR70Q9NW82 654 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms