RNA–Protein interactions for RNA: ENST00000503982.1

LSM6-203, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 820 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-203ENST00000503982 HDGFP51858 240 aaKnown RBP33.41■■■□□ 2.94
LSM6-203ENST00000503982 TMEM131LA2VDJ0 1609 aa33.41■■■□□ 2.94
LSM6-203ENST00000503982 RIMS2Q9UQ26 1411 aa33.39■■■□□ 2.94
LSM6-203ENST00000503982 HSPA1LP34931 641 aa33.39■■■□□ 2.94
LSM6-203ENST00000503982 XIRP1Q702N8 1843 aaKnown RBP33.36■■■□□ 2.93
LSM6-203ENST00000503982 KCNA6P17658 529 aa33.33■■■□□ 2.93
LSM6-203ENST00000503982 ALKQ9UM73 1620 aa33.32■■■□□ 2.92
LSM6-203ENST00000503982 SPHKAPQ2M3C7 1700 aa33.32■■■□□ 2.92
LSM6-203ENST00000503982 ZFYVE9O95405 1425 aa33.31■■■□□ 2.92
LSM6-203ENST00000503982 NUTM2DQ5VT03 806 aaPredicted RBP33.31■■■□□ 2.92
LSM6-203ENST00000503982 PROSER2Q86WR7 435 aaPredicted RBP33.31■■■□□ 2.92
LSM6-203ENST00000503982 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.31■■■□□ 2.92
LSM6-203ENST00000503982 PLEKHG1Q9ULL1 1385 aa33.3■■■□□ 2.92
LSM6-203ENST00000503982 TMEM94Q12767 1356 aa33.25■■■□□ 2.91
LSM6-203ENST00000503982 TRIM52Q96A61 297 aa33.25■■■□□ 2.91
LSM6-203ENST00000503982 RBM33Q96EV2 1170 aaKnown RBP33.25■■■□□ 2.91
LSM6-203ENST00000503982 NAIPQ13075 1403 aa33.25■■■□□ 2.91
LSM6-203ENST00000503982 NWD1Q149M9 1564 aa33.21■■■□□ 2.91
LSM6-203ENST00000503982 CHD2O14647 1828 aaKnown RBP33.21■■■□□ 2.91
LSM6-203ENST00000503982 ZNF326Q5BKZ1 582 aaKnown RBP33.21■■■□□ 2.91
LSM6-203ENST00000503982 ILDR2Q71H61 639 aa33.21■■■□□ 2.91
LSM6-203ENST00000503982 NKTRP30414 1462 aaKnown RBP33.2■■■□□ 2.91
LSM6-203ENST00000503982 TBX22Q9Y458 520 aa33.15■■■□□ 2.9
LSM6-203ENST00000503982 MED1Q15648 1581 aaPredicted RBP33.14■■■□□ 2.9
LSM6-203ENST00000503982 HFM1A2PYH4 1435 aa33.13■■■□□ 2.89
LSM6-203ENST00000503982 MSH6P52701 1360 aa33.13■■■□□ 2.89
LSM6-203ENST00000503982 KIF1BO60333 1816 aa33.13■■■□□ 2.89
LSM6-203ENST00000503982 DIP2AQ14689 1571 aa33.13■■■□□ 2.89
LSM6-203ENST00000503982 CLTCL1P53675 1640 aa33.11■■■□□ 2.89
LSM6-203ENST00000503982 C14orf37Q86TY3 774 aa33.11■■■□□ 2.89
LSM6-203ENST00000503982 ADAMTS13Q76LX8 1427 aa33.09■■■□□ 2.89
LSM6-203ENST00000503982 TRPM2O94759 1503 aa33.08■■■□□ 2.89
LSM6-203ENST00000503982 SLC4A1APQ9BWU0 796 aaKnown RBP33.07■■■□□ 2.88
LSM6-203ENST00000503982 PHF23Q9BUL5 403 aaPredicted RBP33.06■■■□□ 2.88
LSM6-203ENST00000503982 ROBO1Q9Y6N7 1651 aa33.05■■■□□ 2.88
LSM6-203ENST00000503982 FAM135BQ49AJ0 1406 aa33.02■■■□□ 2.88
LSM6-203ENST00000503982 PIK3R4Q99570 1358 aa33.02■■■□□ 2.88
LSM6-203ENST00000503982 AMOTL2Q9Y2J4 779 aa32.98■■■□□ 2.87
LSM6-203ENST00000503982 SOCS7O14512 581 aa32.97■■■□□ 2.87
LSM6-203ENST00000503982 NRXN3Q9Y4C0 1643 aa32.96■■■□□ 2.87
LSM6-203ENST00000503982 SLAIN2Q9P270 581 aa32.96■■■□□ 2.87
LSM6-203ENST00000503982 NEXMIFQ5QGS0 1516 aa32.95■■■□□ 2.87
LSM6-203ENST00000503982 SETBP1Q9Y6X0 1596 aa32.95■■■□□ 2.86
LSM6-203ENST00000503982 NCOA3Q9Y6Q9 1424 aa32.93■■■□□ 2.86
LSM6-203ENST00000503982 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.92■■■□□ 2.86
LSM6-203ENST00000503982 PTPRUQ92729 1446 aa32.92■■■□□ 2.86
LSM6-203ENST00000503982 ATF3P18847 181 aa32.91■■■□□ 2.86
LSM6-203ENST00000503982 PHLPP1O60346 1717 aa32.91■■■□□ 2.86
LSM6-203ENST00000503982 FOXD1Q16676 465 aa32.9■■■□□ 2.86
LSM6-203ENST00000503982 CADPS2Q86UW7 1296 aa32.87■■■□□ 2.85
LSM6-203ENST00000503982 C19orf44Q9H6X5 657 aa32.87■■■□□ 2.85
LSM6-203ENST00000503982 XRN1Q8IZH2 1706 aaKnown RBP32.85■■■□□ 2.85
LSM6-203ENST00000503982 METP08581 1390 aa32.84■■■□□ 2.85
LSM6-203ENST00000503982 VGFO15240 615 aaPredicted RBP32.84■■■□□ 2.85
LSM6-203ENST00000503982 PPLO60437 1756 aa32.81■■■□□ 2.84
LSM6-203ENST00000503982 MPHOSPH9Q99550 1183 aa32.8■■■□□ 2.84
LSM6-203ENST00000503982 RPGRIP1LQ68CZ1 1315 aa32.79■■■□□ 2.84
LSM6-203ENST00000503982 CCDC144AA2RUR9 1427 aa32.78■■■□□ 2.84
LSM6-203ENST00000503982 RGL3Q3MIN7 710 aa32.74■■■□□ 2.83
LSM6-203ENST00000503982 SETD5Q9C0A6 1442 aa32.73■■■□□ 2.83
LSM6-203ENST00000503982 JCADQ9P266 1359 aa32.7■■■□□ 2.83
LSM6-203ENST00000503982 DCCP43146 1447 aa32.7■■■□□ 2.83
LSM6-203ENST00000503982 SETD1AO15047 1707 aaKnown RBP32.7■■■□□ 2.83
LSM6-203ENST00000503982 ACIN1Q9UKV3 1341 aaKnown RBP32.7■■■□□ 2.82
LSM6-203ENST00000503982 COL16A1Q07092 1604 aaPredicted RBP32.69■■■□□ 2.82
LSM6-203ENST00000503982 NALCNQ8IZF0 1738 aa32.68■■■□□ 2.82
LSM6-203ENST00000503982 ADGRL3Q9HAR2 1447 aa32.66■■■□□ 2.82
LSM6-203ENST00000503982 BRINP3Q76B58 766 aa32.65■■■□□ 2.82
LSM6-203ENST00000503982 AHDC1Q5TGY3 1603 aaPredicted RBP32.65■■■□□ 2.82
LSM6-203ENST00000503982 MST1RQ04912 1400 aa32.61■■■□□ 2.81
LSM6-203ENST00000503982 RAB3GAP2Q9H2M9 1393 aa32.61■■■□□ 2.81
LSM6-203ENST00000503982 IFT172Q9UG01 1749 aa32.61■■■□□ 2.81
LSM6-203ENST00000503982 ADGRF5Q8IZF2 1346 aa32.6■■■□□ 2.81
LSM6-203ENST00000503982 ASXL1Q8IXJ9 1541 aa32.6■■■□□ 2.81
LSM6-203ENST00000503982 PTCH1Q13635 1447 aa32.6■■■□□ 2.81
LSM6-203ENST00000503982 MEX3CQ5U5Q3 659 aaKnown RBP32.59■■■□□ 2.81
LSM6-203ENST00000503982 RGS17Q9UGC6 210 aaPredicted RBP32.59■■■□□ 2.81
LSM6-203ENST00000503982 SPATA31E1Q6ZUB1 1445 aa32.57■■■□□ 2.8
LSM6-203ENST00000503982 ANKRD30BQ9BXX2 1392 aa32.57■■■□□ 2.8
LSM6-203ENST00000503982 ROBO2Q9HCK4 1378 aa32.57■■■□□ 2.8
LSM6-203ENST00000503982 SHPRHQ149N8 1683 aa32.55■■■□□ 2.8
LSM6-203ENST00000503982 STK26Q9P289 416 aa32.54■■■□□ 2.8
LSM6-203ENST00000503982 SPATA31A6Q5VVP1 1343 aa32.52■■■□□ 2.8
LSM6-203ENST00000503982 NHSL1Q5SYE7 1610 aa32.52■■■□□ 2.8
LSM6-203ENST00000503982 NUTM2BA6NNL0 878 aaPredicted RBP32.49■■■□□ 2.79
LSM6-203ENST00000503982 NUTM2EB1AL46 878 aaPredicted RBP32.49■■■□□ 2.79
LSM6-203ENST00000503982 NUTM2AQ8IVF1 878 aaPredicted RBP32.49■■■□□ 2.79
LSM6-203ENST00000503982 POTEAQ6S8J7 498 aa32.48■■■□□ 2.79
LSM6-203ENST00000503982 C1orf167Q5SNV9 1468 aa32.48■■■□□ 2.79
LSM6-203ENST00000503982 DDX17Q92841 729 aaKnown RBP32.47■■■□□ 2.79
LSM6-203ENST00000503982 LRP6O75581 1613 aa32.45■■■□□ 2.79
LSM6-203ENST00000503982 TMEM132EQ6IEE7 984 aa32.45■■■□□ 2.79
LSM6-203ENST00000503982 PRAG1Q86YV5 1406 aa32.44■■■□□ 2.78
LSM6-203ENST00000503982 LRRC59Q96AG4 307 aaKnown RBP32.44■■■□□ 2.78
LSM6-203ENST00000503982 PIK3C2GO75747 1445 aa32.43■■■□□ 2.78
LSM6-203ENST00000503982 KNDC1Q76NI1 1749 aa32.4■■■□□ 2.78
LSM6-203ENST00000503982 ORAI2Q96SN7 254 aa32.4■■■□□ 2.78
LSM6-203ENST00000503982 LRPPRCP42704 1394 aaKnown RBP32.4■■■□□ 2.78
LSM6-203ENST00000503982 WAPLQ7Z5K2 1190 aa32.39■■■□□ 2.78
LSM6-203ENST00000503982 CDC42BPGQ6DT37 1551 aa32.36■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms