RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TTC13Q8NBP0 860 aa7.86□□□□□ -1.15
VPS13A-212ENST00000493341 ZDHHC16Q969W1 377 aa7.86□□□□□ -1.15
VPS13A-212ENST00000493341 SPTLC1O15269 473 aa7.85□□□□□ -1.15
VPS13A-212ENST00000493341 PRSS12P56730 875 aa7.85□□□□□ -1.15
VPS13A-212ENST00000493341 PDE4CQ08493 712 aa7.85□□□□□ -1.15
VPS13A-212ENST00000493341 RSBN1LQ6PCB5 846 aaPredicted RBP7.85□□□□□ -1.15
VPS13A-212ENST00000493341 PELP1Q8IZL8 1130 aaKnown RBP7.85□□□□□ -1.15
VPS13A-212ENST00000493341 CDCA7LQ96GN5 454 aa7.85□□□□□ -1.15
VPS13A-212ENST00000493341 RCCD1A6NED2 376 aa7.85□□□□□ -1.15
VPS13A-212ENST00000493341 MOXD2PA6NHM9 499 aa7.85□□□□□ -1.15
VPS13A-212ENST00000493341 NUTM2BA6NNL0 878 aaPredicted RBP7.85□□□□□ -1.15
VPS13A-212ENST00000493341 NUTM2EB1AL46 878 aaPredicted RBP7.85□□□□□ -1.15
VPS13A-212ENST00000493341 RFX1P22670 979 aa7.85□□□□□ -1.15
VPS13A-212ENST00000493341 NUTM2DQ5VT03 806 aaPredicted RBP7.85□□□□□ -1.15
VPS13A-212ENST00000493341 NUTM2AQ8IVF1 878 aaPredicted RBP7.85□□□□□ -1.15
VPS13A-212ENST00000493341 DDX11L8A8MPP1 907 aa7.84□□□□□ -1.15
VPS13A-212ENST00000493341 CD46P15529 392 aa7.84□□□□□ -1.15
VPS13A-212ENST00000493341 NDUFV2P19404 249 aa7.84□□□□□ -1.15
VPS13A-212ENST00000493341 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.83□□□□□ -1.16
VPS13A-212ENST00000493341 FOXD4L5Q5VV16 416 aaPredicted RBP7.83□□□□□ -1.16
VPS13A-212ENST00000493341 ZNF710Q8N1W2 664 aa7.83□□□□□ -1.16
VPS13A-212ENST00000493341 FOXD4L4Q8WXT5 416 aaPredicted RBP7.83□□□□□ -1.16
VPS13A-212ENST00000493341 PCDHB15Q9Y5E8 787 aa7.83□□□□□ -1.16
VPS13A-212ENST00000493341 TUSC1Q2TAM9 212 aa7.83□□□□□ -1.16
VPS13A-212ENST00000493341 RTL5Q5HYW3 569 aaPredicted RBP7.83□□□□□ -1.16
VPS13A-212ENST00000493341 HDGFL1Q5TGJ6 251 aa7.83□□□□□ -1.16
VPS13A-212ENST00000493341 SULF1Q8IWU6 871 aa7.83□□□□□ -1.16
VPS13A-212ENST00000493341 LILRB3O75022 631 aa7.82□□□□□ -1.16
VPS13A-212ENST00000493341 ADAM33Q9BZ11 813 aa7.82□□□□□ -1.16
VPS13A-212ENST00000493341 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-212ENST00000493341 KDM4FA0A1W2PPD8 638 aa7.81□□□□□ -1.16
VPS13A-212ENST00000493341 USP17L8P0C7I0 530 aa7.81□□□□□ -1.16
VPS13A-212ENST00000493341 PBXIP1Q96AQ6 731 aa7.81□□□□□ -1.16
VPS13A-212ENST00000493341 RBM25P49756 843 aaKnown RBP7.81□□□□□ -1.16
VPS13A-212ENST00000493341 POTEFA5A3E0 1075 aa7.8□□□□□ -1.16
VPS13A-212ENST00000493341 SOCS7O14512 581 aa7.8□□□□□ -1.16
VPS13A-212ENST00000493341 ZNF428Q96B54 188 aa7.8□□□□□ -1.16
VPS13A-212ENST00000493341 DCBLD2Q96PD2 775 aa7.8□□□□□ -1.16
VPS13A-212ENST00000493341 CABLES1Q8TDN4 633 aa7.79□□□□□ -1.16
VPS13A-212ENST00000493341 SLC39A7Q92504 469 aa7.79□□□□□ -1.16
VPS13A-212ENST00000493341 EYA1Q99502 592 aa7.79□□□□□ -1.16
VPS13A-212ENST00000493341 PATL2C9JE40 543 aaKnown RBP7.78□□□□□ -1.16
VPS13A-212ENST00000493341 ADAMTS19Q8TE59 1207 aa7.78□□□□□ -1.16
VPS13A-212ENST00000493341 FAM198AQ9UFP1 575 aa7.78□□□□□ -1.16
VPS13A-212ENST00000493341 NDUFB9Q9Y6M9 179 aa7.78□□□□□ -1.16
VPS13A-212ENST00000493341 NUDT7P0C024 238 aa7.78□□□□□ -1.16
VPS13A-212ENST00000493341 POTEIP0CG38 1075 aa7.78□□□□□ -1.16
VPS13A-212ENST00000493341 CSB-PGBD3P0DP91 1061 aa7.78□□□□□ -1.16
VPS13A-212ENST00000493341 GJA5P36382 358 aa7.78□□□□□ -1.16
VPS13A-212ENST00000493341 NUDT18Q6ZVK8 323 aa7.78□□□□□ -1.16
VPS13A-212ENST00000493341 CARNS1A5YM72 827 aa7.77□□□□□ -1.17
VPS13A-212ENST00000493341 BRD1O95696 1058 aa7.77□□□□□ -1.17
VPS13A-212ENST00000493341 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.77□□□□□ -1.17
VPS13A-212ENST00000493341 C7P10643 843 aa7.76□□□□□ -1.17
VPS13A-212ENST00000493341 WASHC4Q2M389 1173 aa7.76□□□□□ -1.17
VPS13A-212ENST00000493341 RDH13Q8NBN7 331 aa7.76□□□□□ -1.17
VPS13A-212ENST00000493341 GJD4Q96KN9 370 aaPredicted RBP7.76□□□□□ -1.17
VPS13A-212ENST00000493341 DNAJB2P25686 324 aa7.76□□□□□ -1.17
VPS13A-212ENST00000493341 CFAP70Q5T0N1 1121 aa7.76□□□□□ -1.17
VPS13A-212ENST00000493341 KDM4AO75164 1064 aa7.75□□□□□ -1.17
VPS13A-212ENST00000493341 VAC14Q08AM6 782 aa7.75□□□□□ -1.17
VPS13A-212ENST00000493341 KCNA1Q09470 495 aa7.75□□□□□ -1.17
VPS13A-212ENST00000493341 PRPF38BQ5VTL8 546 aaKnown RBP7.75□□□□□ -1.17
VPS13A-212ENST00000493341 KHSRPQ92945 711 aaKnown RBP eCLIP7.75□□□□□ -1.17
VPS13A-212ENST00000493341 ZBTB3Q9H5J0 574 aa7.75□□□□□ -1.17
VPS13A-212ENST00000493341 METRNQ9UJH8 293 aa7.75□□□□□ -1.17
VPS13A-212ENST00000493341 TSKSQ9UJT2 592 aa7.75□□□□□ -1.17
VPS13A-212ENST00000493341 COL9A1P20849 921 aa7.74□□□□□ -1.17
VPS13A-212ENST00000493341 TSC1Q92574 1164 aa7.74□□□□□ -1.17
VPS13A-212ENST00000493341 PPP1R12CQ9BZL4 782 aa7.74□□□□□ -1.17
VPS13A-212ENST00000493341 USTQ9Y2C2 406 aa7.74□□□□□ -1.17
VPS13A-212ENST00000493341 CTDSPL2Q05D32 466 aa7.74□□□□□ -1.17
VPS13A-212ENST00000493341 LHX8Q68G74 356 aa7.74□□□□□ -1.17
VPS13A-212ENST00000493341 TMEM134Q9H6X4 195 aa7.74□□□□□ -1.17
VPS13A-212ENST00000493341 HMX1Q9NP08 348 aaPredicted RBP7.74□□□□□ -1.17
VPS13A-212ENST00000493341 C3orf80F5H4A9 247 aa7.73□□□□□ -1.17
VPS13A-212ENST00000493341 ARSIQ5FYB1 569 aa7.73□□□□□ -1.17
VPS13A-212ENST00000493341 PNMA3Q9UL41 463 aa7.73□□□□□ -1.17
VPS13A-212ENST00000493341 LMOD1P29536 600 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-212ENST00000493341 PALM3A6NDB9 673 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-212ENST00000493341 TATDN2Q93075 761 aa7.72□□□□□ -1.17
VPS13A-212ENST00000493341 NBPF26B4DH59 902 aa7.71□□□□□ -1.17
VPS13A-212ENST00000493341 FDX1P10109 184 aa7.71□□□□□ -1.17
VPS13A-212ENST00000493341 SRPK2P78362 688 aaKnown RBP7.71□□□□□ -1.17
VPS13A-212ENST00000493341 TRIM34Q9BYJ4 488 aa7.71□□□□□ -1.18
VPS13A-212ENST00000493341 SMAPO00193 183 aa7.7□□□□□ -1.18
VPS13A-212ENST00000493341 HOXA2O43364 376 aa7.7□□□□□ -1.18
VPS13A-212ENST00000493341 CDCA8Q53HL2 280 aa7.7□□□□□ -1.18
VPS13A-212ENST00000493341 TFIP11Q9UBB9 837 aaKnown RBP7.7□□□□□ -1.18
VPS13A-212ENST00000493341 E9PSI1 815 aa7.69□□□□□ -1.18
VPS13A-212ENST00000493341 GUCA2AQ02747 115 aa7.69□□□□□ -1.18
VPS13A-212ENST00000493341 PACS2Q86VP3 889 aa7.69□□□□□ -1.18
VPS13A-212ENST00000493341 HELBQ8NG08 1087 aaPredicted RBP7.69□□□□□ -1.18
VPS13A-212ENST00000493341 LRRN4Q8WUT4 740 aa7.69□□□□□ -1.18
VPS13A-212ENST00000493341 IVNS1ABPQ9Y6Y0 642 aa7.69□□□□□ -1.18
VPS13A-212ENST00000493341 GPR37L1O60883 481 aa7.69□□□□□ -1.18
VPS13A-212ENST00000493341 USP46P62068 366 aa7.69□□□□□ -1.18
VPS13A-212ENST00000493341 CCDC27Q2M243 656 aa7.69□□□□□ -1.18
VPS13A-212ENST00000493341 ALG2Q9H553 416 aa7.69□□□□□ -1.18
VPS13A-212ENST00000493341 PCDHGC3Q9UN70 934 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms