RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	ZFYVE9	O95405	1425 aa		28.42	■■■□□ 2.14
HDAC6-231	ENST00000488905	TMEM94	Q12767	1356 aa		28.4	■■■□□ 2.14
HDAC6-231	ENST00000488905	SLC26A8	Q96RN1	970 aa		28.4	■■■□□ 2.14
HDAC6-231	ENST00000488905	SENP3	Q9H4L4	574 aa	Predicted RBP	28.4	■■■□□ 2.14
HDAC6-231	ENST00000488905	KCNA6	P17658	529 aa		28.38	■■■□□ 2.13
HDAC6-231	ENST00000488905	CHD2	O14647	1828 aa	Known RBP	28.38	■■■□□ 2.13
HDAC6-231	ENST00000488905	RIMS2	Q9UQ26	1411 aa		28.35	■■■□□ 2.13
HDAC6-231	ENST00000488905	ROBO1	Q9Y6N7	1651 aa		28.35	■■■□□ 2.13
HDAC6-231	ENST00000488905	PLEKHG1	Q9ULL1	1385 aa		28.35	■■■□□ 2.13
HDAC6-231	ENST00000488905	FAM135B	Q49AJ0	1406 aa		28.32	■■■□□ 2.12
HDAC6-231	ENST00000488905	PHF23	Q9BUL5	403 aa	Predicted RBP	28.31	■■■□□ 2.12
HDAC6-231	ENST00000488905	BCAN	Q96GW7	911 aa		28.3	■■■□□ 2.12
HDAC6-231	ENST00000488905	PROSER2	Q86WR7	435 aa	Predicted RBP	28.29	■■■□□ 2.12
HDAC6-231	ENST00000488905	PPP1R15A	O75807	674 aa	Predicted RBP	28.28	■■■□□ 2.12
HDAC6-231	ENST00000488905	DIP2A	Q14689	1571 aa		28.28	■■■□□ 2.12
HDAC6-231	ENST00000488905	SPHKAP	Q2M3C7	1700 aa		28.26	■■■□□ 2.12
HDAC6-231	ENST00000488905	RBM33	Q96EV2	1170 aa	Known RBP	28.26	■■■□□ 2.11
HDAC6-231	ENST00000488905	NUP155	O75694	1391 aa		28.25	■■■□□ 2.11
HDAC6-231	ENST00000488905	HDGF	P51858	240 aa	Known RBP	28.25	■■■□□ 2.11
HDAC6-231	ENST00000488905	ITGAE	P38570	1179 aa		28.24	■■■□□ 2.11
HDAC6-231	ENST00000488905	MSH6	P52701	1360 aa		28.24	■■■□□ 2.11
HDAC6-231	ENST00000488905	CHGA	P10645	457 aa	Known RBP	28.22	■■■□□ 2.11
HDAC6-231	ENST00000488905	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	28.21	■■■□□ 2.11
HDAC6-231	ENST00000488905	ADAMTS13	Q76LX8	1427 aa		28.2	■■■□□ 2.11
HDAC6-231	ENST00000488905	PPARGC1B	Q86YN6	1023 aa	Known RBP	28.19	■■■□□ 2.1
HDAC6-231	ENST00000488905	PHLPP1	O60346	1717 aa		28.18	■■■□□ 2.1
HDAC6-231	ENST00000488905	TBX22	Q9Y458	520 aa		28.17	■■■□□ 2.1
HDAC6-231	ENST00000488905	TRPM2	O94759	1503 aa		28.16	■■■□□ 2.1
HDAC6-231	ENST00000488905	NUTM2D	Q5VT03	806 aa	Predicted RBP	28.14	■■■□□ 2.1
HDAC6-231	ENST00000488905	NCOA3	Q9Y6Q9	1424 aa		28.14	■■■□□ 2.1
HDAC6-231	ENST00000488905	NRXN3	Q9Y4C0	1643 aa		28.14	■■■□□ 2.09
HDAC6-231	ENST00000488905	PIK3R4	Q99570	1358 aa		28.13	■■■□□ 2.09
HDAC6-231	ENST00000488905	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	28.13	■■■□□ 2.09
HDAC6-231	ENST00000488905	RRBP1	Q9P2E9	1410 aa	Known RBP	28.11	■■■□□ 2.09
HDAC6-231	ENST00000488905	SETBP1	Q9Y6X0	1596 aa		28.1	■■■□□ 2.09
HDAC6-231	ENST00000488905	SLAIN2	Q9P270	581 aa		28.09	■■■□□ 2.09
HDAC6-231	ENST00000488905	COL16A1	Q07092	1604 aa	Predicted RBP	28.09	■■■□□ 2.09
HDAC6-231	ENST00000488905	XRN1	Q8IZH2	1706 aa	Known RBP	28.09	■■■□□ 2.09
HDAC6-231	ENST00000488905	CLTCL1	P53675	1640 aa		28.08	■■■□□ 2.09
HDAC6-231	ENST00000488905	RGS17	Q9UGC6	210 aa	Predicted RBP	28.07	■■■□□ 2.08
HDAC6-231	ENST00000488905	KIF1B	O60333	1816 aa		28.06	■■■□□ 2.08
HDAC6-231	ENST00000488905	PTPRU	Q92729	1446 aa		28.05	■■■□□ 2.08
HDAC6-231	ENST00000488905	NAIP	Q13075	1403 aa		28.03	■■■□□ 2.08
HDAC6-231	ENST00000488905	C14orf37	Q86TY3	774 aa		28.03	■■■□□ 2.08
HDAC6-231	ENST00000488905	NEXMIF	Q5QGS0	1516 aa		28.02	■■■□□ 2.08
HDAC6-231	ENST00000488905	AHDC1	Q5TGY3	1603 aa	Predicted RBP	28.01	■■■□□ 2.07
HDAC6-231	ENST00000488905	JCAD	Q9P266	1359 aa		28	■■■□□ 2.07
HDAC6-231	ENST00000488905	CADPS2	Q86UW7	1296 aa		27.98	■■■□□ 2.07
HDAC6-231	ENST00000488905	AMOTL2	Q9Y2J4	779 aa		27.98	■■■□□ 2.07
HDAC6-231	ENST00000488905	ZNF326	Q5BKZ1	582 aa	Known RBP	27.97	■■■□□ 2.07
HDAC6-231	ENST00000488905	C19orf44	Q9H6X5	657 aa		27.97	■■■□□ 2.07
HDAC6-231	ENST00000488905	DCC	P43146	1447 aa		27.96	■■■□□ 2.07
HDAC6-231	ENST00000488905	SHPRH	Q149N8	1683 aa		27.96	■■■□□ 2.07
HDAC6-231	ENST00000488905	ATF3	P18847	181 aa		27.95	■■■□□ 2.06
HDAC6-231	ENST00000488905	HFM1	A2PYH4	1435 aa		27.93	■■■□□ 2.06
HDAC6-231	ENST00000488905	NALCN	Q8IZF0	1738 aa		27.92	■■■□□ 2.06
HDAC6-231	ENST00000488905	MET	P08581	1390 aa		27.91	■■■□□ 2.06
HDAC6-231	ENST00000488905	POTEA	Q6S8J7	498 aa		27.91	■■■□□ 2.06
HDAC6-231	ENST00000488905	SETD1A	O15047	1707 aa	Known RBP	27.91	■■■□□ 2.06
HDAC6-231	ENST00000488905	LRP6	O75581	1613 aa		27.89	■■■□□ 2.06
HDAC6-231	ENST00000488905	NHSL1	Q5SYE7	1610 aa		27.89	■■■□□ 2.05
HDAC6-231	ENST00000488905	ASXL1	Q8IXJ9	1541 aa		27.88	■■■□□ 2.05
HDAC6-231	ENST00000488905	PPL	O60437	1756 aa		27.86	■■■□□ 2.05
HDAC6-231	ENST00000488905	MST1R	Q04912	1400 aa		27.85	■■■□□ 2.05
HDAC6-231	ENST00000488905	SPATA31A6	Q5VVP1	1343 aa		27.85	■■■□□ 2.05
HDAC6-231	ENST00000488905	ADGRL3	Q9HAR2	1447 aa		27.84	■■■□□ 2.05
HDAC6-231	ENST00000488905	BRINP3	Q76B58	766 aa		27.84	■■■□□ 2.05
HDAC6-231	ENST00000488905	TRIM52	Q96A61	297 aa		27.81	■■■□□ 2.04
HDAC6-231	ENST00000488905	PTCH1	Q13635	1447 aa		27.79	■■■□□ 2.04
HDAC6-231	ENST00000488905	SLC4A1AP	Q9BWU0	796 aa	Known RBP	27.76	■■■□□ 2.03
HDAC6-231	ENST00000488905	MEX3C	Q5U5Q3	659 aa	Known RBP	27.75	■■■□□ 2.03
HDAC6-231	ENST00000488905	PRAG1	Q86YV5	1406 aa		27.75	■■■□□ 2.03
HDAC6-231	ENST00000488905	SETD5	Q9C0A6	1442 aa		27.75	■■■□□ 2.03
HDAC6-231	ENST00000488905	VGF	O15240	615 aa	Predicted RBP	27.73	■■■□□ 2.03
HDAC6-231	ENST00000488905	RPGRIP1L	Q68CZ1	1315 aa		27.71	■■■□□ 2.03
HDAC6-231	ENST00000488905	LAMC1	P11047	1609 aa		27.7	■■■□□ 2.03
HDAC6-231	ENST00000488905	IFT172	Q9UG01	1749 aa		27.7	■■■□□ 2.03
HDAC6-231	ENST00000488905	ROBO2	Q9HCK4	1378 aa		27.7	■■■□□ 2.02
HDAC6-231	ENST00000488905	ZNF772	Q68DY9	489 aa	Predicted RBP	27.68	■■■□□ 2.02
HDAC6-231	ENST00000488905	C1orf167	Q5SNV9	1468 aa		27.68	■■■□□ 2.02
HDAC6-231	ENST00000488905	CCDC144A	A2RUR9	1427 aa		27.64	■■■□□ 2.02
HDAC6-231	ENST00000488905	NUTM2B	A6NNL0	878 aa	Predicted RBP	27.63	■■■□□ 2.01
HDAC6-231	ENST00000488905	NUTM2E	B1AL46	878 aa	Predicted RBP	27.63	■■■□□ 2.01
HDAC6-231	ENST00000488905	FOXD1	Q16676	465 aa		27.63	■■■□□ 2.01
HDAC6-231	ENST00000488905	NUTM2A	Q8IVF1	878 aa	Predicted RBP	27.63	■■■□□ 2.01
HDAC6-231	ENST00000488905	PNPLA6	Q8IY17	1366 aa		27.62	■■■□□ 2.01
HDAC6-231	ENST00000488905	DDX17	Q92841	729 aa	Known RBP	27.62	■■■□□ 2.01
HDAC6-231	ENST00000488905	LRRC59	Q96AG4	307 aa	Known RBP	27.62	■■■□□ 2.01
HDAC6-231	ENST00000488905	CDC42BPG	Q6DT37	1551 aa		27.61	■■■□□ 2.01
HDAC6-231	ENST00000488905	SPATA31E1	Q6ZUB1	1445 aa		27.59	■■■□□ 2.01
HDAC6-231	ENST00000488905	KNDC1	Q76NI1	1749 aa		27.59	■■■□□ 2.01
HDAC6-231	ENST00000488905	AFF2	P51816	1311 aa		27.56	■■■□□ 2
HDAC6-231	ENST00000488905	CDK12	Q9NYV4	1490 aa	Predicted RBP	27.55	■■■□□ 2
HDAC6-231	ENST00000488905	ADGRF5	Q8IZF2	1346 aa		27.54	■■■□□ 2
HDAC6-231	ENST00000488905	TECPR2	O15040	1411 aa		27.53	■■■□□ 2
HDAC6-231	ENST00000488905	ANKRD30B	Q9BXX2	1392 aa		27.53	■■■□□ 2
HDAC6-231	ENST00000488905	RXRB	P28702	533 aa		27.52	■■■□□ 2
HDAC6-231	ENST00000488905	ORAI2	Q96SN7	254 aa		27.52	■■■□□ 2
HDAC6-231	ENST00000488905	MPHOSPH9	Q99550	1183 aa		27.52	■■■□□ 2
HDAC6-231	ENST00000488905	COL22A1	Q8NFW1	1626 aa	Predicted RBP	27.52	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms