RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 TIMELESSQ9UNS1 1208 aa12□□□□□ -0.49
SF3B1-210ENST00000482158 BHMG1C9JSJ3 638 aaPredicted RBP11.99□□□□□ -0.49
SF3B1-210ENST00000482158 CD46P15529 392 aa11.99□□□□□ -0.49
SF3B1-210ENST00000482158 TK2O00142 265 aa11.97□□□□□ -0.49
SF3B1-210ENST00000482158 SH3D19Q5HYK7 790 aa11.97□□□□□ -0.49
SF3B1-210ENST00000482158 DDX11L8A8MPP1 907 aa11.95□□□□□ -0.5
SF3B1-210ENST00000482158 LSM11P83369 360 aaKnown RBP eCLIP11.95□□□□□ -0.5
SF3B1-210ENST00000482158 FAM98CQ17RN3 349 aaKnown RBP11.95□□□□□ -0.5
SF3B1-210ENST00000482158 SWT1Q5T5J6 900 aaKnown RBP11.94□□□□□ -0.5
SF3B1-210ENST00000482158 MYSM1Q5VVJ2 828 aa11.94□□□□□ -0.5
SF3B1-210ENST00000482158 SULF1Q8IWU6 871 aa11.94□□□□□ -0.5
SF3B1-210ENST00000482158 SKIV2LQ15477 1246 aaKnown RBP11.93□□□□□ -0.5
SF3B1-210ENST00000482158 TBC1D2Q9BYX2 928 aa11.93□□□□□ -0.5
SF3B1-210ENST00000482158 HRO43593 1189 aa11.92□□□□□ -0.5
SF3B1-210ENST00000482158 ADGRD1Q6QNK2 874 aa11.92□□□□□ -0.5
SF3B1-210ENST00000482158 LAPTM4BQ86VI4 370 aa11.92□□□□□ -0.5
SF3B1-210ENST00000482158 SPIRE2Q8WWL2 714 aa11.92□□□□□ -0.5
SF3B1-210ENST00000482158 RSPH6AQ9H0K4 717 aa11.92□□□□□ -0.5
SF3B1-210ENST00000482158 SLC10A3P09131 477 aa11.91□□□□□ -0.5
SF3B1-210ENST00000482158 PROCA1Q8NCQ7 364 aaPredicted RBP11.9□□□□□ -0.5
SF3B1-210ENST00000482158 SAMD7Q7Z3H4 446 aa11.89□□□□□ -0.51
SF3B1-210ENST00000482158 PCMTD1Q96MG8 357 aaPredicted RBP11.89□□□□□ -0.51
SF3B1-210ENST00000482158 NBPF3Q9H094 633 aa11.89□□□□□ -0.51
SF3B1-210ENST00000482158 POLR3EQ9NVU0 708 aa11.89□□□□□ -0.51
SF3B1-210ENST00000482158 RDH13Q8NBN7 331 aa11.87□□□□□ -0.51
SF3B1-210ENST00000482158 ZFRQ96KR1 1074 aaKnown RBP11.87□□□□□ -0.51
SF3B1-210ENST00000482158 GCGRP47871 477 aa11.86□□□□□ -0.51
SF3B1-210ENST00000482158 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.86□□□□□ -0.51
SF3B1-210ENST00000482158 KRTAP3-3Q9BYR6 98 aa11.85□□□□□ -0.51
SF3B1-210ENST00000482158 KRTAP3-2Q9BYR7 98 aa11.85□□□□□ -0.51
SF3B1-210ENST00000482158 LIMD1Q9UGP4 676 aa11.85□□□□□ -0.51
SF3B1-210ENST00000482158 CLK2P49760 499 aaKnown RBP11.84□□□□□ -0.51
SF3B1-210ENST00000482158 DIXDC1Q155Q3 683 aa11.84□□□□□ -0.51
SF3B1-210ENST00000482158 FBXO31Q5XUX0 539 aaPredicted RBP11.84□□□□□ -0.51
SF3B1-210ENST00000482158 ANKRD13DQ6ZTN6 518 aa11.84□□□□□ -0.51
SF3B1-210ENST00000482158 MRPL50Q8N5N7 158 aaKnown RBP11.84□□□□□ -0.51
SF3B1-210ENST00000482158 MOXD2PA6NHM9 499 aa11.83□□□□□ -0.52
SF3B1-210ENST00000482158 NUTM1Q86Y26 1132 aa11.83□□□□□ -0.52
SF3B1-210ENST00000482158 SPTLC1O15269 473 aa11.82□□□□□ -0.52
SF3B1-210ENST00000482158 HDGFP51858 240 aaKnown RBP11.82□□□□□ -0.52
SF3B1-210ENST00000482158 RIC3Q7Z5B4 369 aa11.82□□□□□ -0.52
SF3B1-210ENST00000482158 C14orf37Q86TY3 774 aa11.82□□□□□ -0.52
SF3B1-210ENST00000482158 KDM4AO75164 1064 aa11.81□□□□□ -0.52
SF3B1-210ENST00000482158 NDUFV2P19404 249 aa11.81□□□□□ -0.52
SF3B1-210ENST00000482158 RSBN1LQ6PCB5 846 aaPredicted RBP11.81□□□□□ -0.52
SF3B1-210ENST00000482158 SLF2Q8IX21 1173 aa11.81□□□□□ -0.52
SF3B1-210ENST00000482158 RSPH4AQ5TD94 716 aa11.8□□□□□ -0.52
SF3B1-210ENST00000482158 ERICH6Q7L0X2 663 aa11.8□□□□□ -0.52
SF3B1-210ENST00000482158 TUSC1Q2TAM9 212 aa11.79□□□□□ -0.52
SF3B1-210ENST00000482158 HOXA2O43364 376 aa11.77□□□□□ -0.53
SF3B1-210ENST00000482158 GJA5P36382 358 aa11.77□□□□□ -0.53
SF3B1-210ENST00000482158 PCDHB15Q9Y5E8 787 aa11.77□□□□□ -0.53
SF3B1-210ENST00000482158 CFHP08603 1231 aa11.76□□□□□ -0.53
SF3B1-210ENST00000482158 USP46P62068 366 aa11.76□□□□□ -0.53
SF3B1-210ENST00000482158 HLA-CQ95604 372 aa11.76□□□□□ -0.53
SF3B1-210ENST00000482158 LRCH3Q96II8 777 aa11.76□□□□□ -0.53
SF3B1-210ENST00000482158 RNF40O75150 1001 aa11.75□□□□□ -0.53
SF3B1-210ENST00000482158 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.75□□□□□ -0.53
SF3B1-210ENST00000482158 SLC4A3P48751 1232 aa11.74□□□□□ -0.53
SF3B1-210ENST00000482158 FUT2Q10981 343 aa11.74□□□□□ -0.53
SF3B1-210ENST00000482158 QPCTQ16769 361 aa11.74□□□□□ -0.53
SF3B1-210ENST00000482158 PPP2R2DQ66LE6 453 aa11.74□□□□□ -0.53
SF3B1-210ENST00000482158 PCDHGC3Q9UN70 934 aa11.74□□□□□ -0.53
SF3B1-210ENST00000482158 SOWAHBA6NEL2 793 aa11.73□□□□□ -0.53
SF3B1-210ENST00000482158 GUCA2AQ02747 115 aa11.73□□□□□ -0.53
SF3B1-210ENST00000482158 CDAN1Q8IWY9 1227 aa11.73□□□□□ -0.53
SF3B1-210ENST00000482158 ATP1B4Q9UN42 357 aaPredicted RBP11.73□□□□□ -0.53
SF3B1-210ENST00000482158 LILRB3O75022 631 aa11.72□□□□□ -0.53
SF3B1-210ENST00000482158 RFC5P40937 340 aa11.72□□□□□ -0.53
SF3B1-210ENST00000482158 BCAMP50895 628 aa11.72□□□□□ -0.53
SF3B1-210ENST00000482158 CSPP1Q1MSJ5 1256 aa11.72□□□□□ -0.53
SF3B1-210ENST00000482158 ANKK1Q8NFD2 765 aa11.72□□□□□ -0.53
SF3B1-210ENST00000482158 STAC3Q96MF2 364 aa11.71□□□□□ -0.53
SF3B1-210ENST00000482158 FDX1P10109 184 aa11.7□□□□□ -0.54
SF3B1-210ENST00000482158 CABLES1Q8TDN4 633 aa11.7□□□□□ -0.54
SF3B1-210ENST00000482158 GOLGA8CPA6NN73 597 aa11.69□□□□□ -0.54
SF3B1-210ENST00000482158 FLIIQ13045 1269 aa11.69□□□□□ -0.54
SF3B1-210ENST00000482158 RTL5Q5HYW3 569 aaPredicted RBP11.69□□□□□ -0.54
SF3B1-210ENST00000482158 WNT2BQ93097 391 aa11.69□□□□□ -0.54
SF3B1-210ENST00000482158 ACTN4O43707 911 aaKnown RBP11.68□□□□□ -0.54
SF3B1-210ENST00000482158 MCM6Q14566 821 aa11.68□□□□□ -0.54
SF3B1-210ENST00000482158 PRPF38BQ5VTL8 546 aaKnown RBP11.68□□□□□ -0.54
SF3B1-210ENST00000482158 HPS5Q9UPZ3 1129 aa11.68□□□□□ -0.54
SF3B1-210ENST00000482158 HRCP23327 699 aa11.67□□□□□ -0.54
SF3B1-210ENST00000482158 ATP6V1AP38606 617 aa11.67□□□□□ -0.54
SF3B1-210ENST00000482158 KMT5BQ4FZB7 885 aa11.67□□□□□ -0.54
SF3B1-210ENST00000482158 APLP1P51693 650 aa11.66□□□□□ -0.54
SF3B1-210ENST00000482158 TSR3Q9UJK0 312 aaKnown RBP11.66□□□□□ -0.54
SF3B1-210ENST00000482158 PPP4CP60510 307 aa11.65□□□□□ -0.54
SF3B1-210ENST00000482158 MORN1Q5T089 497 aa11.65□□□□□ -0.54
SF3B1-210ENST00000482158 NECTIN2Q92692 538 aa11.65□□□□□ -0.54
SF3B1-210ENST00000482158 PUS10Q3MIT2 529 aaKnown RBP11.64□□□□□ -0.55
SF3B1-210ENST00000482158 GRIPAP1Q4V328 841 aa11.64□□□□□ -0.55
SF3B1-210ENST00000482158 ZMYND15Q9H091 742 aa11.64□□□□□ -0.55
SF3B1-210ENST00000482158 ZBTB3Q9H5J0 574 aa11.64□□□□□ -0.55
SF3B1-210ENST00000482158 TMEM259Q4ZIN3 620 aa11.63□□□□□ -0.55
SF3B1-210ENST00000482158 BANK1Q8NDB2 785 aa11.63□□□□□ -0.55
SF3B1-210ENST00000482158 SNRKQ9NRH2 765 aa11.63□□□□□ -0.55
SF3B1-210ENST00000482158 THSD4Q6ZMP0 1018 aa11.62□□□□□ -0.55
SF3B1-210ENST00000482158 WBP1LQ9NX94 342 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms