RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 NWD1Q149M9 1564 aa20.39■□□□□ 0.85
VCL-205ENST00000478896 PPP1R15AO75807 674 aaPredicted RBP20.39■□□□□ 0.85
VCL-205ENST00000478896 NKTRP30414 1462 aaKnown RBP20.38■□□□□ 0.85
VCL-205ENST00000478896 PROSER2Q86WR7 435 aaPredicted RBP20.38■□□□□ 0.85
VCL-205ENST00000478896 E9PCH4 1651 aa20.37■□□□□ 0.85
VCL-205ENST00000478896 TMEM131LA2VDJ0 1609 aa20.37■□□□□ 0.85
VCL-205ENST00000478896 ZFYVE9O95405 1425 aa20.36■□□□□ 0.85
VCL-205ENST00000478896 RIMS2Q9UQ26 1411 aa20.36■□□□□ 0.85
VCL-205ENST00000478896 ROBO1Q9Y6N7 1651 aa20.35■□□□□ 0.85
VCL-205ENST00000478896 CHGAP10645 457 aaKnown RBP20.35■□□□□ 0.85
VCL-205ENST00000478896 HDGFP51858 240 aaKnown RBP20.35■□□□□ 0.85
VCL-205ENST00000478896 RBM33Q96EV2 1170 aaKnown RBP20.35■□□□□ 0.85
VCL-205ENST00000478896 IQGAP3Q86VI3 1631 aa20.35■□□□□ 0.85
VCL-205ENST00000478896 ROCK1Q13464 1354 aa20.34■□□□□ 0.85
VCL-205ENST00000478896 PLEKHG1Q9ULL1 1385 aa20.34■□□□□ 0.85
VCL-205ENST00000478896 FAM135BQ49AJ0 1406 aa20.34■□□□□ 0.85
VCL-205ENST00000478896 MSH6P52701 1360 aa20.33■□□□□ 0.84
VCL-205ENST00000478896 CHD2O14647 1828 aaKnown RBP20.32■□□□□ 0.84
VCL-205ENST00000478896 ITGAEP38570 1179 aa20.32■□□□□ 0.84
VCL-205ENST00000478896 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.28■□□□□ 0.84
VCL-205ENST00000478896 NUP155O75694 1391 aa20.28■□□□□ 0.84
VCL-205ENST00000478896 NUTM2DQ5VT03 806 aaPredicted RBP20.27■□□□□ 0.84
VCL-205ENST00000478896 DIP2AQ14689 1571 aa20.26■□□□□ 0.83
VCL-205ENST00000478896 PPARGC1BQ86YN6 1023 aaKnown RBP20.26■□□□□ 0.83
VCL-205ENST00000478896 PHLPP1O60346 1717 aa20.25■□□□□ 0.83
VCL-205ENST00000478896 SPHKAPQ2M3C7 1700 aa20.23■□□□□ 0.83
VCL-205ENST00000478896 C14orf37Q86TY3 774 aa20.23■□□□□ 0.83
VCL-205ENST00000478896 TBX22Q9Y458 520 aa20.23■□□□□ 0.83
VCL-205ENST00000478896 ADAMTS13Q76LX8 1427 aa20.21■□□□□ 0.83
VCL-205ENST00000478896 SLAIN2Q9P270 581 aa20.21■□□□□ 0.83
VCL-205ENST00000478896 TRPM2O94759 1503 aa20.21■□□□□ 0.83
VCL-205ENST00000478896 PIK3R4Q99570 1358 aa20.19■□□□□ 0.82
VCL-205ENST00000478896 NCOA3Q9Y6Q9 1424 aa20.19■□□□□ 0.82
VCL-205ENST00000478896 RGS17Q9UGC6 210 aaPredicted RBP20.18■□□□□ 0.82
VCL-205ENST00000478896 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.17■□□□□ 0.82
VCL-205ENST00000478896 JCADQ9P266 1359 aa20.15■□□□□ 0.82
VCL-205ENST00000478896 COL16A1Q07092 1604 aaPredicted RBP20.14■□□□□ 0.81
VCL-205ENST00000478896 ZNF326Q5BKZ1 582 aaKnown RBP20.14■□□□□ 0.81
VCL-205ENST00000478896 ATF3P18847 181 aa20.13■□□□□ 0.81
VCL-205ENST00000478896 CADPS2Q86UW7 1296 aa20.13■□□□□ 0.81
VCL-205ENST00000478896 NRXN3Q9Y4C0 1643 aa20.13■□□□□ 0.81
VCL-205ENST00000478896 C19orf44Q9H6X5 657 aa20.12■□□□□ 0.81
VCL-205ENST00000478896 AMOTL2Q9Y2J4 779 aa20.12■□□□□ 0.81
VCL-205ENST00000478896 SETBP1Q9Y6X0 1596 aa20.12■□□□□ 0.81
VCL-205ENST00000478896 PTPRUQ92729 1446 aa20.1■□□□□ 0.81
VCL-205ENST00000478896 CLTCL1P53675 1640 aa20.1■□□□□ 0.81
VCL-205ENST00000478896 XRN1Q8IZH2 1706 aaKnown RBP20.1■□□□□ 0.81
VCL-205ENST00000478896 RRBP1Q9P2E9 1410 aaKnown RBP20.1■□□□□ 0.81
VCL-205ENST00000478896 KIF1BO60333 1816 aa20.09■□□□□ 0.81
VCL-205ENST00000478896 POTEAQ6S8J7 498 aa20.09■□□□□ 0.81
VCL-205ENST00000478896 AHDC1Q5TGY3 1603 aaPredicted RBP20.09■□□□□ 0.81
VCL-205ENST00000478896 DCCP43146 1447 aa20.06■□□□□ 0.8
VCL-205ENST00000478896 NEXMIFQ5QGS0 1516 aa20.06■□□□□ 0.8
VCL-205ENST00000478896 NAIPQ13075 1403 aa20.05■□□□□ 0.8
VCL-205ENST00000478896 MEX3CQ5U5Q3 659 aaKnown RBP20.05■□□□□ 0.8
VCL-205ENST00000478896 SHPRHQ149N8 1683 aa20.05■□□□□ 0.8
VCL-205ENST00000478896 SPATA31A6Q5VVP1 1343 aa20.04■□□□□ 0.8
VCL-205ENST00000478896 SETD1AO15047 1707 aaKnown RBP20.03■□□□□ 0.8
VCL-205ENST00000478896 LRP6O75581 1613 aa20.02■□□□□ 0.8
VCL-205ENST00000478896 TRIM52Q96A61 297 aa20.02■□□□□ 0.8
VCL-205ENST00000478896 METP08581 1390 aa20.02■□□□□ 0.8
VCL-205ENST00000478896 ASXL1Q8IXJ9 1541 aa20.02■□□□□ 0.79
VCL-205ENST00000478896 BRINP3Q76B58 766 aa20.01■□□□□ 0.79
VCL-205ENST00000478896 NALCNQ8IZF0 1738 aa19.99■□□□□ 0.79
VCL-205ENST00000478896 MST1RQ04912 1400 aa19.99■□□□□ 0.79
VCL-205ENST00000478896 HFM1A2PYH4 1435 aa19.98■□□□□ 0.79
VCL-205ENST00000478896 ADGRL3Q9HAR2 1447 aa19.98■□□□□ 0.79
VCL-205ENST00000478896 NHSL1Q5SYE7 1610 aa19.98■□□□□ 0.79
VCL-205ENST00000478896 ZNF772Q68DY9 489 aaPredicted RBP19.95■□□□□ 0.78
VCL-205ENST00000478896 NUTM2BA6NNL0 878 aaPredicted RBP19.94■□□□□ 0.78
VCL-205ENST00000478896 NUTM2EB1AL46 878 aaPredicted RBP19.94■□□□□ 0.78
VCL-205ENST00000478896 NUTM2AQ8IVF1 878 aaPredicted RBP19.94■□□□□ 0.78
VCL-205ENST00000478896 SLC4A1APQ9BWU0 796 aaKnown RBP19.94■□□□□ 0.78
VCL-205ENST00000478896 VGFO15240 615 aaPredicted RBP19.93■□□□□ 0.78
VCL-205ENST00000478896 PPLO60437 1756 aa19.93■□□□□ 0.78
VCL-205ENST00000478896 PTCH1Q13635 1447 aa19.92■□□□□ 0.78
VCL-205ENST00000478896 SETD5Q9C0A6 1442 aa19.92■□□□□ 0.78
VCL-205ENST00000478896 LRRC59Q96AG4 307 aaKnown RBP19.89■□□□□ 0.77
VCL-205ENST00000478896 RPGRIP1LQ68CZ1 1315 aa19.88■□□□□ 0.77
VCL-205ENST00000478896 DDX17Q92841 729 aaKnown RBP19.88■□□□□ 0.77
VCL-205ENST00000478896 C1orf167Q5SNV9 1468 aa19.87■□□□□ 0.77
VCL-205ENST00000478896 ROBO2Q9HCK4 1378 aa19.86■□□□□ 0.77
VCL-205ENST00000478896 PNPLA6Q8IY17 1366 aa19.84■□□□□ 0.77
VCL-205ENST00000478896 AFF2P51816 1311 aa19.84■□□□□ 0.77
VCL-205ENST00000478896 RXRBP28702 533 aa19.84■□□□□ 0.77
VCL-205ENST00000478896 FOXD1Q16676 465 aa19.84■□□□□ 0.77
VCL-205ENST00000478896 CCDC144AA2RUR9 1427 aa19.84■□□□□ 0.77
VCL-205ENST00000478896 C8orf37Q96NL8 207 aa19.83■□□□□ 0.77
VCL-205ENST00000478896 PRAG1Q86YV5 1406 aa19.83■□□□□ 0.76
VCL-205ENST00000478896 LAMC1P11047 1609 aa19.81■□□□□ 0.76
VCL-205ENST00000478896 ORAI2Q96SN7 254 aa19.79■□□□□ 0.76
VCL-205ENST00000478896 IFT172Q9UG01 1749 aa19.79■□□□□ 0.76
VCL-205ENST00000478896 CDK12Q9NYV4 1490 aaPredicted RBP19.79■□□□□ 0.76
VCL-205ENST00000478896 RGL3Q3MIN7 710 aa19.78■□□□□ 0.76
VCL-205ENST00000478896 CDC42BPGQ6DT37 1551 aa19.78■□□□□ 0.76
VCL-205ENST00000478896 ADGRF5Q8IZF2 1346 aa19.76■□□□□ 0.75
VCL-205ENST00000478896 ADAMTS2O95450 1211 aa19.76■□□□□ 0.75
VCL-205ENST00000478896 UPF1Q92900 1129 aaKnown RBP eCLIP19.76■□□□□ 0.75
VCL-205ENST00000478896 SOS2Q07890 1332 aaPredicted RBP19.76■□□□□ 0.75
VCL-205ENST00000478896 ANKRD30BQ9BXX2 1392 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms