RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TMEM259Q4ZIN3 620 aa9.57□□□□□ -0.88
UPF3B-203ENST00000478840 CCDC82Q8N4S0 544 aa9.57□□□□□ -0.88
UPF3B-203ENST00000478840 RAD21O60216 631 aa9.56□□□□□ -0.88
UPF3B-203ENST00000478840 COL9A1P20849 921 aa9.56□□□□□ -0.88
UPF3B-203ENST00000478840 SPIRE2Q8WWL2 714 aa9.56□□□□□ -0.88
UPF3B-203ENST00000478840 POM121Q96HA1 1249 aa9.56□□□□□ -0.88
UPF3B-203ENST00000478840 PPP1R3GB7ZBB8 358 aa9.55□□□□□ -0.88
UPF3B-203ENST00000478840 SOCS7O14512 581 aa9.55□□□□□ -0.88
UPF3B-203ENST00000478840 GJA5P36382 358 aa9.55□□□□□ -0.88
UPF3B-203ENST00000478840 PPP4R3BQ5MIZ7 849 aa9.55□□□□□ -0.88
UPF3B-203ENST00000478840 SULF1Q8IWU6 871 aa9.55□□□□□ -0.88
UPF3B-203ENST00000478840 LIMD1Q9UGP4 676 aa9.55□□□□□ -0.88
UPF3B-203ENST00000478840 LHX6Q9UPM6 363 aa9.55□□□□□ -0.88
UPF3B-203ENST00000478840 SPTLC1O15269 473 aa9.54□□□□□ -0.88
UPF3B-203ENST00000478840 FBXO31Q5XUX0 539 aaPredicted RBP9.54□□□□□ -0.88
UPF3B-203ENST00000478840 RIC3Q7Z5B4 369 aa9.54□□□□□ -0.88
UPF3B-203ENST00000478840 HS3ST6Q96QI5 342 aa9.54□□□□□ -0.88
UPF3B-203ENST00000478840 TSKSQ9UJT2 592 aa9.54□□□□□ -0.88
UPF3B-203ENST00000478840 ATP1B4Q9UN42 357 aaPredicted RBP9.54□□□□□ -0.88
UPF3B-203ENST00000478840 COG6Q9Y2V7 657 aa9.54□□□□□ -0.88
UPF3B-203ENST00000478840 ERBB3P21860 1342 aa9.53□□□□□ -0.88
UPF3B-203ENST00000478840 DNAJB2P25686 324 aa9.52□□□□□ -0.89
UPF3B-203ENST00000478840 CDAN1Q8IWY9 1227 aa9.52□□□□□ -0.89
UPF3B-203ENST00000478840 SNRKQ9NRH2 765 aa9.52□□□□□ -0.89
UPF3B-203ENST00000478840 NBPF26B4DH59 902 aa9.51□□□□□ -0.89
UPF3B-203ENST00000478840 PTPREP23469 700 aa9.51□□□□□ -0.89
UPF3B-203ENST00000478840 RSBN1LQ6PCB5 846 aaPredicted RBP9.51□□□□□ -0.89
UPF3B-203ENST00000478840 TMEM134Q9H6X4 195 aa9.51□□□□□ -0.89
UPF3B-203ENST00000478840 PODXL2Q9NZ53 605 aa9.51□□□□□ -0.89
UPF3B-203ENST00000478840 TRIM6-TRIM34B2RNG4 842 aa9.5□□□□□ -0.89
UPF3B-203ENST00000478840 VARS2Q5ST30 1063 aaKnown RBP9.5□□□□□ -0.89
UPF3B-203ENST00000478840 NUDT18Q6ZVK8 323 aa9.5□□□□□ -0.89
UPF3B-203ENST00000478840 ZNF777Q9ULD5 760 aaPredicted RBP9.5□□□□□ -0.89
UPF3B-203ENST00000478840 C3orf80F5H4A9 247 aa9.49□□□□□ -0.89
UPF3B-203ENST00000478840 TRIM26Q12899 539 aaPredicted RBP9.49□□□□□ -0.89
UPF3B-203ENST00000478840 TATDN2Q93075 761 aa9.49□□□□□ -0.89
UPF3B-203ENST00000478840 SERPINA10Q9UK55 444 aa9.49□□□□□ -0.89
UPF3B-203ENST00000478840 LILRB3O75022 631 aa9.48□□□□□ -0.89
UPF3B-203ENST00000478840 PACS2Q86VP3 889 aa9.48□□□□□ -0.89
UPF3B-203ENST00000478840 NUTM1Q86Y26 1132 aa9.48□□□□□ -0.89
UPF3B-203ENST00000478840 HRCP23327 699 aa9.47□□□□□ -0.89
UPF3B-203ENST00000478840 MTMR14Q8NCE2 650 aa9.47□□□□□ -0.89
UPF3B-203ENST00000478840 PLSCR2Q9NRY7 297 aa9.47□□□□□ -0.89
UPF3B-203ENST00000478840 MOXD2PA6NHM9 499 aa9.46□□□□□ -0.9
UPF3B-203ENST00000478840 DDX11L8A8MPP1 907 aa9.46□□□□□ -0.9
UPF3B-203ENST00000478840 PNMA3Q9UL41 463 aa9.46□□□□□ -0.9
UPF3B-203ENST00000478840 PRPF38BQ5VTL8 546 aaKnown RBP9.45□□□□□ -0.9
UPF3B-203ENST00000478840 CCDC97Q96F63 343 aaPredicted RBP9.44□□□□□ -0.9
UPF3B-203ENST00000478840 PDIA4P13667 645 aaKnown RBP9.43□□□□□ -0.9
UPF3B-203ENST00000478840 USP46P62068 366 aa9.43□□□□□ -0.9
UPF3B-203ENST00000478840 QPCTQ16769 361 aa9.43□□□□□ -0.9
UPF3B-203ENST00000478840 ZNF330Q9Y3S2 320 aaPredicted RBP9.43□□□□□ -0.9
UPF3B-203ENST00000478840 NDUFV2P19404 249 aa9.42□□□□□ -0.9
UPF3B-203ENST00000478840 KRTAP3-3Q9BYR6 98 aa9.42□□□□□ -0.9
UPF3B-203ENST00000478840 KRTAP3-2Q9BYR7 98 aa9.42□□□□□ -0.9
UPF3B-203ENST00000478840 KDM4AO75164 1064 aa9.41□□□□□ -0.9
UPF3B-203ENST00000478840 PRM3Q9NNZ6 103 aa9.41□□□□□ -0.9
UPF3B-203ENST00000478840 PCDHB15Q9Y5E8 787 aa9.41□□□□□ -0.9
UPF3B-203ENST00000478840 GCGRP47871 477 aa9.4□□□□□ -0.9
UPF3B-203ENST00000478840 RTL5Q5HYW3 569 aaPredicted RBP9.4□□□□□ -0.9
UPF3B-203ENST00000478840 WWC1Q8IX03 1113 aa9.4□□□□□ -0.9
UPF3B-203ENST00000478840 GDPD2Q9HCC8 539 aa9.4□□□□□ -0.9
UPF3B-203ENST00000478840 PROX2Q3B8N5 592 aa9.39□□□□□ -0.91
UPF3B-203ENST00000478840 RSPH4AQ5TD94 716 aa9.39□□□□□ -0.91
UPF3B-203ENST00000478840 POTEEQ6S8J3 1075 aa9.39□□□□□ -0.91
UPF3B-203ENST00000478840 HOXA2O43364 376 aa9.38□□□□□ -0.91
UPF3B-203ENST00000478840 USP17L8P0C7I0 530 aa9.38□□□□□ -0.91
UPF3B-203ENST00000478840 CSPP1Q1MSJ5 1256 aa9.38□□□□□ -0.91
UPF3B-203ENST00000478840 RDH13Q8NBN7 331 aa9.38□□□□□ -0.91
UPF3B-203ENST00000478840 ZBTB3Q9H5J0 574 aa9.38□□□□□ -0.91
UPF3B-203ENST00000478840 AXIN2Q9Y2T1 843 aa9.38□□□□□ -0.91
UPF3B-203ENST00000478840 SMAPO00193 183 aa9.37□□□□□ -0.91
UPF3B-203ENST00000478840 AP1G2O75843 785 aa9.37□□□□□ -0.91
UPF3B-203ENST00000478840 KCNK17Q96T54 332 aa9.37□□□□□ -0.91
UPF3B-203ENST00000478840 ZBED2Q9BTP6 218 aa9.37□□□□□ -0.91
UPF3B-203ENST00000478840 TRAIPQ9BWF2 469 aa9.37□□□□□ -0.91
UPF3B-203ENST00000478840 ZNF687Q8N1G0 1237 aa9.36□□□□□ -0.91
UPF3B-203ENST00000478840 CABLES1Q8TDN4 633 aa9.36□□□□□ -0.91
UPF3B-203ENST00000478840 SLC4A5Q9BY07 1137 aa9.36□□□□□ -0.91
UPF3B-203ENST00000478840 KIAA1468Q9P260 1216 aa9.36□□□□□ -0.91
UPF3B-203ENST00000478840 TBC1D2BQ9UPU7 963 aa9.36□□□□□ -0.91
UPF3B-203ENST00000478840 NUTM2BA6NNL0 878 aaPredicted RBP9.35□□□□□ -0.91
UPF3B-203ENST00000478840 NUTM2EB1AL46 878 aaPredicted RBP9.35□□□□□ -0.91
UPF3B-203ENST00000478840 SLC10A3P09131 477 aa9.35□□□□□ -0.91
UPF3B-203ENST00000478840 NUTM2DQ5VT03 806 aaPredicted RBP9.35□□□□□ -0.91
UPF3B-203ENST00000478840 NUTM2AQ8IVF1 878 aaPredicted RBP9.35□□□□□ -0.91
UPF3B-203ENST00000478840 GJD4Q96KN9 370 aaPredicted RBP9.35□□□□□ -0.91
UPF3B-203ENST00000478840 KCNH8Q96L42 1107 aa9.35□□□□□ -0.91
UPF3B-203ENST00000478840 FDX1P10109 184 aa9.34□□□□□ -0.91
UPF3B-203ENST00000478840 RABGEF1Q9UJ41 708 aa9.34□□□□□ -0.91
UPF3B-203ENST00000478840 PCDHGC3Q9UN70 934 aa9.34□□□□□ -0.91
UPF3B-203ENST00000478840 ABL2P42684 1182 aa9.33□□□□□ -0.92
UPF3B-203ENST00000478840 NDUFB9Q9Y6M9 179 aa9.33□□□□□ -0.92
UPF3B-203ENST00000478840 ZBTB7CA1YPR0 619 aa9.32□□□□□ -0.92
UPF3B-203ENST00000478840 PPP1R15AO75807 674 aaPredicted RBP9.32□□□□□ -0.92
UPF3B-203ENST00000478840 SWT1Q5T5J6 900 aaKnown RBP9.32□□□□□ -0.92
UPF3B-203ENST00000478840 NECTIN2Q92692 538 aa9.32□□□□□ -0.92
UPF3B-203ENST00000478840 PSEN2P49810 448 aa9.31□□□□□ -0.92
UPF3B-203ENST00000478840 GLMNQ92990 594 aa9.31□□□□□ -0.92
UPF3B-203ENST00000478840 CALR3Q96L12 384 aaKnown RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms