RNA–Protein interactions for RNA: ENST00000475344.1

LTN1-204, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 3

Gene LTN1, Length 696 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-204ENST00000475344 NLRP7Q8WX94 980 aa11.64□□□□□ -0.55
LTN1-204ENST00000475344 NECTIN2Q92692 538 aa11.62□□□□□ -0.55
LTN1-204ENST00000475344 APLP1P51693 650 aa11.6□□□□□ -0.55
LTN1-204ENST00000475344 MAP2K5Q13163 448 aa11.59□□□□□ -0.55
LTN1-204ENST00000475344 KCNC4Q03721 635 aa11.57□□□□□ -0.56
LTN1-204ENST00000475344 PHOX2BQ99453 314 aa11.57□□□□□ -0.56
LTN1-204ENST00000475344 ITGBL1O95965 494 aaPredicted RBP11.56□□□□□ -0.56
LTN1-204ENST00000475344 KRI1Q8N9T8 703 aaKnown RBP11.56□□□□□ -0.56
LTN1-204ENST00000475344 MTRQ99707 1265 aa11.55□□□□□ -0.56
LTN1-204ENST00000475344 IRF6O14896 467 aa11.54□□□□□ -0.56
LTN1-204ENST00000475344 CFHP08603 1231 aa11.54□□□□□ -0.56
LTN1-204ENST00000475344 COPS2P61201 443 aa11.54□□□□□ -0.56
LTN1-204ENST00000475344 RDH13Q8NBN7 331 aa11.54□□□□□ -0.56
LTN1-204ENST00000475344 MINK1Q8N4C8 1332 aaPredicted RBP11.54□□□□□ -0.56
LTN1-204ENST00000475344 DDX11L8A8MPP1 907 aa11.53□□□□□ -0.56
LTN1-204ENST00000475344 SLC10A3P09131 477 aa11.53□□□□□ -0.56
LTN1-204ENST00000475344 ZC3H15Q8WU90 426 aaKnown RBP11.53□□□□□ -0.56
LTN1-204ENST00000475344 CCDC102AQ96A19 550 aa11.53□□□□□ -0.56
LTN1-204ENST00000475344 KMT5BQ4FZB7 885 aa11.52□□□□□ -0.57
LTN1-204ENST00000475344 TJAP1Q5JTD0 557 aa11.52□□□□□ -0.57
LTN1-204ENST00000475344 RSPH4AQ5TD94 716 aa11.52□□□□□ -0.57
LTN1-204ENST00000475344 PRR14Q9BWN1 585 aa11.52□□□□□ -0.57
LTN1-204ENST00000475344 DAXXQ9UER7 740 aaPredicted RBP11.52□□□□□ -0.57
LTN1-204ENST00000475344 IFFO2Q5TF58 517 aa11.51□□□□□ -0.57
LTN1-204ENST00000475344 IL21Q9HBE4 155 aa11.51□□□□□ -0.57
LTN1-204ENST00000475344 PCDHB3Q9Y5E6 796 aa11.51□□□□□ -0.57
LTN1-204ENST00000475344 ZNF516Q92618 1163 aa11.5□□□□□ -0.57
LTN1-204ENST00000475344 MDM2Q00987 491 aaPredicted RBP11.49□□□□□ -0.57
LTN1-204ENST00000475344 A0A0G2JS52 829 aa11.48□□□□□ -0.57
LTN1-204ENST00000475344 ZMYND10O75800 440 aa11.47□□□□□ -0.57
LTN1-204ENST00000475344 BLOC1S3Q6QNY0 202 aa11.47□□□□□ -0.57
LTN1-204ENST00000475344 BCANQ96GW7 911 aa11.47□□□□□ -0.57
LTN1-204ENST00000475344 BARGINQ6ZT62 677 aa11.46□□□□□ -0.57
LTN1-204ENST00000475344 SULF1Q8IWU6 871 aa11.46□□□□□ -0.57
LTN1-204ENST00000475344 ACTN4O43707 911 aaKnown RBP11.45□□□□□ -0.58
LTN1-204ENST00000475344 NKX2-3Q8TAU0 364 aa11.43□□□□□ -0.58
LTN1-204ENST00000475344 PUS10Q3MIT2 529 aaKnown RBP11.42□□□□□ -0.58
LTN1-204ENST00000475344 ZPR1O75312 459 aa11.41□□□□□ -0.58
LTN1-204ENST00000475344 TLL1O43897 1013 aa11.4□□□□□ -0.58
LTN1-204ENST00000475344 GPCPD1Q9NPB8 672 aa11.4□□□□□ -0.58
LTN1-204ENST00000475344 CLCN1P35523 988 aa11.39□□□□□ -0.59
LTN1-204ENST00000475344 TTLL12Q14166 644 aaPredicted RBP11.39□□□□□ -0.59
LTN1-204ENST00000475344 GCGRP47871 477 aa11.38□□□□□ -0.59
LTN1-204ENST00000475344 FUT2Q10981 343 aa11.38□□□□□ -0.59
LTN1-204ENST00000475344 PPP1R18Q6NYC8 613 aa11.37□□□□□ -0.59
LTN1-204ENST00000475344 NR1I2O75469 434 aa11.36□□□□□ -0.59
LTN1-204ENST00000475344 CD46P15529 392 aa11.35□□□□□ -0.59
LTN1-204ENST00000475344 SCUBE3Q8IX30 993 aa11.35□□□□□ -0.59
LTN1-204ENST00000475344 ATP6V1AP38606 617 aa11.34□□□□□ -0.59
LTN1-204ENST00000475344 REPIN1Q9BWE0 567 aaKnown RBP11.34□□□□□ -0.59
LTN1-204ENST00000475344 FAM217BQ9NTX9 383 aaPredicted RBP11.33□□□□□ -0.6
LTN1-204ENST00000475344 AK7Q96M32 723 aa11.32□□□□□ -0.6
LTN1-204ENST00000475344 SLC24A3Q9HC58 644 aa11.32□□□□□ -0.6
LTN1-204ENST00000475344 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.32□□□□□ -0.6
LTN1-204ENST00000475344 GGCXP38435 758 aa11.31□□□□□ -0.6
LTN1-204ENST00000475344 TRIM66O15016 1216 aa11.3□□□□□ -0.6
LTN1-204ENST00000475344 GRIPAP1Q4V328 841 aa11.3□□□□□ -0.6
LTN1-204ENST00000475344 MORN1Q5T089 497 aa11.3□□□□□ -0.6
LTN1-204ENST00000475344 TMUB1Q9BVT8 246 aa11.3□□□□□ -0.6
LTN1-204ENST00000475344 KDM4AO75164 1064 aa11.29□□□□□ -0.6
LTN1-204ENST00000475344 RGS20O76081 388 aa11.29□□□□□ -0.6
LTN1-204ENST00000475344 SSTR3P32745 418 aaPredicted RBP11.29□□□□□ -0.6
LTN1-204ENST00000475344 AMHR2Q16671 573 aa11.29□□□□□ -0.6
LTN1-204ENST00000475344 GIGYF2Q6Y7W6 1299 aaKnown RBP11.29□□□□□ -0.6
LTN1-204ENST00000475344 SLC27A5Q9Y2P5 690 aa11.29□□□□□ -0.6
LTN1-204ENST00000475344 S1PR4O95977 384 aa11.28□□□□□ -0.6
LTN1-204ENST00000475344 ADH1BP00325 375 aa11.28□□□□□ -0.6
LTN1-204ENST00000475344 SPSB2Q99619 263 aa11.28□□□□□ -0.6
LTN1-204ENST00000475344 NUTM1Q86Y26 1132 aa11.27□□□□□ -0.61
LTN1-204ENST00000475344 PPEF1O14829 653 aaPredicted RBP11.26□□□□□ -0.61
LTN1-204ENST00000475344 SLC6A16Q9GZN6 736 aa11.26□□□□□ -0.61
LTN1-204ENST00000475344 HLA-CQ95604 372 aa11.25□□□□□ -0.61
LTN1-204ENST00000475344 FMNL1O95466 1100 aaPredicted RBP11.24□□□□□ -0.61
LTN1-204ENST00000475344 PARP9Q8IXQ6 854 aa11.24□□□□□ -0.61
LTN1-204ENST00000475344 PRKD2Q9BZL6 878 aa11.24□□□□□ -0.61
LTN1-204ENST00000475344 RNF223E7ERA6 249 aa11.23□□□□□ -0.61
LTN1-204ENST00000475344 RNF19BQ6ZMZ0 732 aa11.23□□□□□ -0.61
LTN1-204ENST00000475344 HOXA2O43364 376 aa11.22□□□□□ -0.61
LTN1-204ENST00000475344 USP46P62068 366 aa11.22□□□□□ -0.61
LTN1-204ENST00000475344 GUCA2AQ02747 115 aa11.22□□□□□ -0.61
LTN1-204ENST00000475344 PDE4DQ08499 809 aa11.22□□□□□ -0.61
LTN1-204ENST00000475344 THAP11Q96EK4 314 aa11.2□□□□□ -0.62
LTN1-204ENST00000475344 BEGAINQ9BUH8 593 aa11.2□□□□□ -0.62
LTN1-204ENST00000475344 Q3C1V9 767 aa11.19□□□□□ -0.62
LTN1-204ENST00000475344 MS4A1P11836 297 aa11.18□□□□□ -0.62
LTN1-204ENST00000475344 BRICD5Q6PL45 260 aa11.18□□□□□ -0.62
LTN1-204ENST00000475344 IRX2Q9BZI1 471 aaPredicted RBP11.18□□□□□ -0.62
LTN1-204ENST00000475344 PRDM9Q9NQV7 894 aa11.18□□□□□ -0.62
LTN1-204ENST00000475344 FAM160A2Q8N612 972 aaPredicted RBP11.17□□□□□ -0.62
LTN1-204ENST00000475344 ANKLE1Q8NAG6 615 aa11.17□□□□□ -0.62
LTN1-204ENST00000475344 SPIRE2Q8WWL2 714 aa11.17□□□□□ -0.62
LTN1-204ENST00000475344 SALL2Q9Y467 1007 aaPredicted RBP11.16□□□□□ -0.62
LTN1-204ENST00000475344 NDUFV2P19404 249 aa11.15□□□□□ -0.62
LTN1-204ENST00000475344 SYMPKQ92797 1274 aaKnown RBP11.15□□□□□ -0.62
LTN1-204ENST00000475344 FDX1P10109 184 aa11.14□□□□□ -0.63
LTN1-204ENST00000475344 V9GY48 417 aaPredicted RBP11.14□□□□□ -0.63
LTN1-204ENST00000475344 MOXD2PA6NHM9 499 aa11.13□□□□□ -0.63
LTN1-204ENST00000475344 SLC19A1P41440 591 aa11.13□□□□□ -0.63
LTN1-204ENST00000475344 USB1Q9BQ65 265 aaKnown RBP11.13□□□□□ -0.63
LTN1-204ENST00000475344 FCF1Q9Y324 198 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms