RNA–Protein interactions for RNA: ENST00000473720.5

SMPD4-217, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 555 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-217ENST00000473720 SLC52A1Q9NWF4 448 aa18.27■□□□□ 0.52
SMPD4-217ENST00000473720 ROCK1Q13464 1354 aa18.27■□□□□ 0.51
SMPD4-217ENST00000473720 CHD2O14647 1828 aaKnown RBP18.25■□□□□ 0.51
SMPD4-217ENST00000473720 MED1Q15648 1581 aaPredicted RBP18.24■□□□□ 0.51
SMPD4-217ENST00000473720 SPHKAPQ2M3C7 1700 aa18.23■□□□□ 0.51
SMPD4-217ENST00000473720 NUP155O75694 1391 aa18.23■□□□□ 0.51
SMPD4-217ENST00000473720 PPP1R15AO75807 674 aaPredicted RBP18.23■□□□□ 0.51
SMPD4-217ENST00000473720 RBM33Q96EV2 1170 aaKnown RBP18.23■□□□□ 0.51
SMPD4-217ENST00000473720 NUTM2DQ5VT03 806 aaPredicted RBP18.21■□□□□ 0.51
SMPD4-217ENST00000473720 RIMS2Q9UQ26 1411 aa18.21■□□□□ 0.51
SMPD4-217ENST00000473720 PROSER2Q86WR7 435 aaPredicted RBP18.19■□□□□ 0.5
SMPD4-217ENST00000473720 ZFYVE9O95405 1425 aa18.18■□□□□ 0.5
SMPD4-217ENST00000473720 KCNA6P17658 529 aa18.18■□□□□ 0.5
SMPD4-217ENST00000473720 TMEM94Q12767 1356 aa18.17■□□□□ 0.5
SMPD4-217ENST00000473720 NWD1Q149M9 1564 aa18.17■□□□□ 0.5
SMPD4-217ENST00000473720 KIF1BO60333 1816 aa18.16■□□□□ 0.5
SMPD4-217ENST00000473720 ROBO1Q9Y6N7 1651 aa18.16■□□□□ 0.5
SMPD4-217ENST00000473720 HDGFP51858 240 aaKnown RBP18.16■□□□□ 0.5
SMPD4-217ENST00000473720 PLEKHG1Q9ULL1 1385 aa18.15■□□□□ 0.5
SMPD4-217ENST00000473720 SOCS7O14512 581 aa18.14■□□□□ 0.49
SMPD4-217ENST00000473720 NKTRP30414 1462 aaKnown RBP18.14■□□□□ 0.49
SMPD4-217ENST00000473720 RRBP1Q9P2E9 1410 aaKnown RBP18.13■□□□□ 0.49
SMPD4-217ENST00000473720 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.12■□□□□ 0.49
SMPD4-217ENST00000473720 PHF23Q9BUL5 403 aaPredicted RBP18.12■□□□□ 0.49
SMPD4-217ENST00000473720 CLTCL1P53675 1640 aa18.1■□□□□ 0.49
SMPD4-217ENST00000473720 PHLPP1O60346 1717 aa18.09■□□□□ 0.49
SMPD4-217ENST00000473720 MSH6P52701 1360 aa18.09■□□□□ 0.49
SMPD4-217ENST00000473720 ZNF326Q5BKZ1 582 aaKnown RBP18.09■□□□□ 0.49
SMPD4-217ENST00000473720 DIP2AQ14689 1571 aa18.08■□□□□ 0.49
SMPD4-217ENST00000473720 C14orf37Q86TY3 774 aa18.08■□□□□ 0.48
SMPD4-217ENST00000473720 NAIPQ13075 1403 aa18.07■□□□□ 0.48
SMPD4-217ENST00000473720 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.07■□□□□ 0.48
SMPD4-217ENST00000473720 TRIM52Q96A61 297 aa18.07■□□□□ 0.48
SMPD4-217ENST00000473720 ADAMTS13Q76LX8 1427 aa18.06■□□□□ 0.48
SMPD4-217ENST00000473720 TBX22Q9Y458 520 aa18.06■□□□□ 0.48
SMPD4-217ENST00000473720 TRPM2O94759 1503 aa18.06■□□□□ 0.48
SMPD4-217ENST00000473720 NRXN3Q9Y4C0 1643 aa18.05■□□□□ 0.48
SMPD4-217ENST00000473720 FAM135BQ49AJ0 1406 aa18.05■□□□□ 0.48
SMPD4-217ENST00000473720 SLAIN2Q9P270 581 aa18.01■□□□□ 0.47
SMPD4-217ENST00000473720 AMOTL2Q9Y2J4 779 aa18■□□□□ 0.47
SMPD4-217ENST00000473720 PTPRUQ92729 1446 aa17.99■□□□□ 0.47
SMPD4-217ENST00000473720 NEXMIFQ5QGS0 1516 aa17.99■□□□□ 0.47
SMPD4-217ENST00000473720 XRN1Q8IZH2 1706 aaKnown RBP17.99■□□□□ 0.47
SMPD4-217ENST00000473720 SETBP1Q9Y6X0 1596 aa17.99■□□□□ 0.47
SMPD4-217ENST00000473720 HFM1A2PYH4 1435 aa17.98■□□□□ 0.47
SMPD4-217ENST00000473720 PPLO60437 1756 aa17.97■□□□□ 0.47
SMPD4-217ENST00000473720 PIK3R4Q99570 1358 aa17.97■□□□□ 0.47
SMPD4-217ENST00000473720 SLC4A1APQ9BWU0 796 aaKnown RBP17.97■□□□□ 0.47
SMPD4-217ENST00000473720 ATF3P18847 181 aa17.96■□□□□ 0.47
SMPD4-217ENST00000473720 NCOA3Q9Y6Q9 1424 aa17.94■□□□□ 0.46
SMPD4-217ENST00000473720 COL16A1Q07092 1604 aaPredicted RBP17.94■□□□□ 0.46
SMPD4-217ENST00000473720 METP08581 1390 aa17.93■□□□□ 0.46
SMPD4-217ENST00000473720 SETD1AO15047 1707 aaKnown RBP17.93■□□□□ 0.46
SMPD4-217ENST00000473720 NALCNQ8IZF0 1738 aa17.93■□□□□ 0.46
SMPD4-217ENST00000473720 FOXD1Q16676 465 aa17.93■□□□□ 0.46
SMPD4-217ENST00000473720 CADPS2Q86UW7 1296 aa17.93■□□□□ 0.46
SMPD4-217ENST00000473720 C19orf44Q9H6X5 657 aa17.93■□□□□ 0.46
SMPD4-217ENST00000473720 RGS17Q9UGC6 210 aaPredicted RBP17.9■□□□□ 0.46
SMPD4-217ENST00000473720 JCADQ9P266 1359 aa17.88■□□□□ 0.45
SMPD4-217ENST00000473720 AHDC1Q5TGY3 1603 aaPredicted RBP17.87■□□□□ 0.45
SMPD4-217ENST00000473720 SHPRHQ149N8 1683 aa17.87■□□□□ 0.45
SMPD4-217ENST00000473720 VGFO15240 615 aaPredicted RBP17.86■□□□□ 0.45
SMPD4-217ENST00000473720 IFT172Q9UG01 1749 aa17.86■□□□□ 0.45
SMPD4-217ENST00000473720 NHSL1Q5SYE7 1610 aa17.85■□□□□ 0.45
SMPD4-217ENST00000473720 BRINP3Q76B58 766 aa17.84■□□□□ 0.45
SMPD4-217ENST00000473720 ASXL1Q8IXJ9 1541 aa17.83■□□□□ 0.45
SMPD4-217ENST00000473720 DCCP43146 1447 aa17.83■□□□□ 0.45
SMPD4-217ENST00000473720 RGL3Q3MIN7 710 aa17.83■□□□□ 0.44
SMPD4-217ENST00000473720 MEX3CQ5U5Q3 659 aaKnown RBP17.83■□□□□ 0.44
SMPD4-217ENST00000473720 POTEAQ6S8J7 498 aa17.83■□□□□ 0.44
SMPD4-217ENST00000473720 CCDC144AA2RUR9 1427 aa17.82■□□□□ 0.44
SMPD4-217ENST00000473720 MST1RQ04912 1400 aa17.82■□□□□ 0.44
SMPD4-217ENST00000473720 ADGRL3Q9HAR2 1447 aa17.81■□□□□ 0.44
SMPD4-217ENST00000473720 RPGRIP1LQ68CZ1 1315 aa17.81■□□□□ 0.44
SMPD4-217ENST00000473720 MPHOSPH9Q99550 1183 aa17.81■□□□□ 0.44
SMPD4-217ENST00000473720 LRP6O75581 1613 aa17.8■□□□□ 0.44
SMPD4-217ENST00000473720 NUTM2BA6NNL0 878 aaPredicted RBP17.8■□□□□ 0.44
SMPD4-217ENST00000473720 NUTM2EB1AL46 878 aaPredicted RBP17.8■□□□□ 0.44
SMPD4-217ENST00000473720 NUTM2AQ8IVF1 878 aaPredicted RBP17.8■□□□□ 0.44
SMPD4-217ENST00000473720 DDX17Q92841 729 aaKnown RBP17.79■□□□□ 0.44
SMPD4-217ENST00000473720 ROBO2Q9HCK4 1378 aa17.78■□□□□ 0.44
SMPD4-217ENST00000473720 SPATA31A6Q5VVP1 1343 aa17.77■□□□□ 0.44
SMPD4-217ENST00000473720 ADGRF5Q8IZF2 1346 aa17.76■□□□□ 0.43
SMPD4-217ENST00000473720 PTCH1Q13635 1447 aa17.76■□□□□ 0.43
SMPD4-217ENST00000473720 SETD5Q9C0A6 1442 aa17.75■□□□□ 0.43
SMPD4-217ENST00000473720 STK26Q9P289 416 aa17.74■□□□□ 0.43
SMPD4-217ENST00000473720 C1orf167Q5SNV9 1468 aa17.73■□□□□ 0.43
SMPD4-217ENST00000473720 RGPD8O14715 1765 aaPredicted RBP17.73■□□□□ 0.43
SMPD4-217ENST00000473720 SPATA31E1Q6ZUB1 1445 aa17.72■□□□□ 0.43
SMPD4-217ENST00000473720 KNDC1Q76NI1 1749 aa17.72■□□□□ 0.43
SMPD4-217ENST00000473720 ORAI2Q96SN7 254 aa17.71■□□□□ 0.43
SMPD4-217ENST00000473720 ANKRD30BQ9BXX2 1392 aa17.7■□□□□ 0.42
SMPD4-217ENST00000473720 RAB3GAP2Q9H2M9 1393 aa17.7■□□□□ 0.42
SMPD4-217ENST00000473720 TMEM132EQ6IEE7 984 aa17.7■□□□□ 0.42
SMPD4-217ENST00000473720 LRRC59Q96AG4 307 aaKnown RBP17.7■□□□□ 0.42
SMPD4-217ENST00000473720 NUTM2FA1L443 756 aa17.68■□□□□ 0.42
SMPD4-217ENST00000473720 ZNF772Q68DY9 489 aaPredicted RBP17.68■□□□□ 0.42
SMPD4-217ENST00000473720 WAPLQ7Z5K2 1190 aa17.68■□□□□ 0.42
SMPD4-217ENST00000473720 LAMC1P11047 1609 aa17.68■□□□□ 0.42
SMPD4-217ENST00000473720 PNPLA6Q8IY17 1366 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms