RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 TMEM131LA2VDJ0 1609 aa30.25■■■□□ 2.43
COL9A3-210ENST00000472880 ZFYVE9O95405 1425 aa30.23■■■□□ 2.43
COL9A3-210ENST00000472880 BCANQ96GW7 911 aa30.23■■■□□ 2.43
COL9A3-210ENST00000472880 KCNA6P17658 529 aa30.22■■■□□ 2.43
COL9A3-210ENST00000472880 NWD1Q149M9 1564 aa30.22■■■□□ 2.43
COL9A3-210ENST00000472880 RIMS2Q9UQ26 1411 aa30.22■■■□□ 2.43
COL9A3-210ENST00000472880 SENP3Q9H4L4 574 aaPredicted RBP30.21■■■□□ 2.43
COL9A3-210ENST00000472880 NKTRP30414 1462 aaKnown RBP30.2■■■□□ 2.43
COL9A3-210ENST00000472880 TMEM94Q12767 1356 aa30.2■■■□□ 2.43
COL9A3-210ENST00000472880 PPP1R15AO75807 674 aaPredicted RBP30.2■■■□□ 2.43
COL9A3-210ENST00000472880 NUP155O75694 1391 aa30.19■■■□□ 2.42
COL9A3-210ENST00000472880 PLEKHG1Q9ULL1 1385 aa30.19■■■□□ 2.42
COL9A3-210ENST00000472880 HDGFP51858 240 aaKnown RBP30.18■■■□□ 2.42
COL9A3-210ENST00000472880 CHGAP10645 457 aaKnown RBP30.17■■■□□ 2.42
COL9A3-210ENST00000472880 PROSER2Q86WR7 435 aaPredicted RBP30.15■■■□□ 2.42
COL9A3-210ENST00000472880 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.12■■■□□ 2.41
COL9A3-210ENST00000472880 CHD2O14647 1828 aaKnown RBP30.08■■■□□ 2.41
COL9A3-210ENST00000472880 FAM135BQ49AJ0 1406 aa30.08■■■□□ 2.41
COL9A3-210ENST00000472880 RBM33Q96EV2 1170 aaKnown RBP30.08■■■□□ 2.41
COL9A3-210ENST00000472880 PHF23Q9BUL5 403 aaPredicted RBP30.08■■■□□ 2.41
COL9A3-210ENST00000472880 RRBP1Q9P2E9 1410 aaKnown RBP30.07■■■□□ 2.4
COL9A3-210ENST00000472880 DIP2AQ14689 1571 aa30.07■■■□□ 2.4
COL9A3-210ENST00000472880 MSH6P52701 1360 aa30.06■■■□□ 2.4
COL9A3-210ENST00000472880 SPHKAPQ2M3C7 1700 aa30.06■■■□□ 2.4
COL9A3-210ENST00000472880 ROBO1Q9Y6N7 1651 aa30.04■■■□□ 2.4
COL9A3-210ENST00000472880 NUTM2DQ5VT03 806 aaPredicted RBP30.03■■■□□ 2.4
COL9A3-210ENST00000472880 TBX22Q9Y458 520 aa30.03■■■□□ 2.4
COL9A3-210ENST00000472880 ADAMTS13Q76LX8 1427 aa30.01■■■□□ 2.39
COL9A3-210ENST00000472880 PIK3R4Q99570 1358 aa29.97■■■□□ 2.39
COL9A3-210ENST00000472880 TRPM2O94759 1503 aa29.96■■■□□ 2.39
COL9A3-210ENST00000472880 NAIPQ13075 1403 aa29.96■■■□□ 2.39
COL9A3-210ENST00000472880 NCOA3Q9Y6Q9 1424 aa29.94■■■□□ 2.38
COL9A3-210ENST00000472880 C14orf37Q86TY3 774 aa29.91■■■□□ 2.38
COL9A3-210ENST00000472880 CLTCL1P53675 1640 aa29.9■■■□□ 2.38
COL9A3-210ENST00000472880 ZNF326Q5BKZ1 582 aaKnown RBP29.9■■■□□ 2.38
COL9A3-210ENST00000472880 SLAIN2Q9P270 581 aa29.9■■■□□ 2.38
COL9A3-210ENST00000472880 SETBP1Q9Y6X0 1596 aa29.89■■■□□ 2.38
COL9A3-210ENST00000472880 NRXN3Q9Y4C0 1643 aa29.88■■■□□ 2.37
COL9A3-210ENST00000472880 PHLPP1O60346 1717 aa29.87■■■□□ 2.37
COL9A3-210ENST00000472880 HFM1A2PYH4 1435 aa29.86■■■□□ 2.37
COL9A3-210ENST00000472880 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.85■■■□□ 2.37
COL9A3-210ENST00000472880 PTPRUQ92729 1446 aa29.84■■■□□ 2.37
COL9A3-210ENST00000472880 AMOTL2Q9Y2J4 779 aa29.83■■■□□ 2.37
COL9A3-210ENST00000472880 KIF1BO60333 1816 aa29.82■■■□□ 2.36
COL9A3-210ENST00000472880 XRN1Q8IZH2 1706 aaKnown RBP29.82■■■□□ 2.36
COL9A3-210ENST00000472880 NEXMIFQ5QGS0 1516 aa29.82■■■□□ 2.36
COL9A3-210ENST00000472880 TRIM52Q96A61 297 aa29.81■■■□□ 2.36
COL9A3-210ENST00000472880 CADPS2Q86UW7 1296 aa29.8■■■□□ 2.36
COL9A3-210ENST00000472880 C19orf44Q9H6X5 657 aa29.8■■■□□ 2.36
COL9A3-210ENST00000472880 ATF3P18847 181 aa29.79■■■□□ 2.36
COL9A3-210ENST00000472880 COL16A1Q07092 1604 aaPredicted RBP29.77■■■□□ 2.36
COL9A3-210ENST00000472880 JCADQ9P266 1359 aa29.76■■■□□ 2.35
COL9A3-210ENST00000472880 RGS17Q9UGC6 210 aaPredicted RBP29.75■■■□□ 2.35
COL9A3-210ENST00000472880 DCCP43146 1447 aa29.73■■■□□ 2.35
COL9A3-210ENST00000472880 METP08581 1390 aa29.73■■■□□ 2.35
COL9A3-210ENST00000472880 AHDC1Q5TGY3 1603 aaPredicted RBP29.72■■■□□ 2.35
COL9A3-210ENST00000472880 SLC4A1APQ9BWU0 796 aaKnown RBP29.72■■■□□ 2.35
COL9A3-210ENST00000472880 ADGRL3Q9HAR2 1447 aa29.63■■■□□ 2.33
COL9A3-210ENST00000472880 VGFO15240 615 aaPredicted RBP29.63■■■□□ 2.33
COL9A3-210ENST00000472880 BRINP3Q76B58 766 aa29.63■■■□□ 2.33
COL9A3-210ENST00000472880 NALCNQ8IZF0 1738 aa29.62■■■□□ 2.33
COL9A3-210ENST00000472880 ASXL1Q8IXJ9 1541 aa29.62■■■□□ 2.33
COL9A3-210ENST00000472880 SHPRHQ149N8 1683 aa29.62■■■□□ 2.33
COL9A3-210ENST00000472880 SETD1AO15047 1707 aaKnown RBP29.62■■■□□ 2.33
COL9A3-210ENST00000472880 MST1RQ04912 1400 aa29.62■■■□□ 2.33
COL9A3-210ENST00000472880 RPGRIP1LQ68CZ1 1315 aa29.61■■■□□ 2.33
COL9A3-210ENST00000472880 PPLO60437 1756 aa29.6■■■□□ 2.33
COL9A3-210ENST00000472880 POTEAQ6S8J7 498 aa29.6■■■□□ 2.33
COL9A3-210ENST00000472880 SPATA31A6Q5VVP1 1343 aa29.6■■■□□ 2.33
COL9A3-210ENST00000472880 LRP6O75581 1613 aa29.57■■■□□ 2.32
COL9A3-210ENST00000472880 PTCH1Q13635 1447 aa29.57■■■□□ 2.32
COL9A3-210ENST00000472880 NHSL1Q5SYE7 1610 aa29.56■■■□□ 2.32
COL9A3-210ENST00000472880 FOXD1Q16676 465 aa29.55■■■□□ 2.32
COL9A3-210ENST00000472880 CCDC144AA2RUR9 1427 aa29.54■■■□□ 2.32
COL9A3-210ENST00000472880 MEX3CQ5U5Q3 659 aaKnown RBP29.54■■■□□ 2.32
COL9A3-210ENST00000472880 PRAG1Q86YV5 1406 aa29.51■■■□□ 2.31
COL9A3-210ENST00000472880 ROBO2Q9HCK4 1378 aa29.5■■■□□ 2.31
COL9A3-210ENST00000472880 SETD5Q9C0A6 1442 aa29.49■■■□□ 2.31
COL9A3-210ENST00000472880 MPHOSPH9Q99550 1183 aa29.47■■■□□ 2.31
COL9A3-210ENST00000472880 C1orf167Q5SNV9 1468 aa29.45■■■□□ 2.31
COL9A3-210ENST00000472880 IFT172Q9UG01 1749 aa29.44■■■□□ 2.3
COL9A3-210ENST00000472880 SPATA31E1Q6ZUB1 1445 aa29.44■■■□□ 2.3
COL9A3-210ENST00000472880 NUTM2BA6NNL0 878 aaPredicted RBP29.42■■■□□ 2.3
COL9A3-210ENST00000472880 NUTM2EB1AL46 878 aaPredicted RBP29.42■■■□□ 2.3
COL9A3-210ENST00000472880 RGL3Q3MIN7 710 aa29.42■■■□□ 2.3
COL9A3-210ENST00000472880 ZNF772Q68DY9 489 aaPredicted RBP29.42■■■□□ 2.3
COL9A3-210ENST00000472880 NUTM2AQ8IVF1 878 aaPredicted RBP29.42■■■□□ 2.3
COL9A3-210ENST00000472880 LRRC59Q96AG4 307 aaKnown RBP29.42■■■□□ 2.3
COL9A3-210ENST00000472880 ACIN1Q9UKV3 1341 aaKnown RBP29.41■■■□□ 2.3
COL9A3-210ENST00000472880 ANKRD30BQ9BXX2 1392 aa29.4■■■□□ 2.3
COL9A3-210ENST00000472880 DDX17Q92841 729 aaKnown RBP29.4■■■□□ 2.3
COL9A3-210ENST00000472880 ADGRF5Q8IZF2 1346 aa29.4■■■□□ 2.3
COL9A3-210ENST00000472880 LAMC1P11047 1609 aa29.38■■■□□ 2.29
COL9A3-210ENST00000472880 PNPLA6Q8IY17 1366 aa29.37■■■□□ 2.29
COL9A3-210ENST00000472880 CDC42BPGQ6DT37 1551 aa29.36■■■□□ 2.29
COL9A3-210ENST00000472880 PIK3C2GO75747 1445 aa29.33■■■□□ 2.29
COL9A3-210ENST00000472880 TECPR2O15040 1411 aa29.32■■■□□ 2.28
COL9A3-210ENST00000472880 ORAI2Q96SN7 254 aa29.32■■■□□ 2.28
COL9A3-210ENST00000472880 KNDC1Q76NI1 1749 aa29.31■■■□□ 2.28
COL9A3-210ENST00000472880 LRPPRCP42704 1394 aaKnown RBP29.3■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms