RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 UGGT1Q9NYU2 1555 aa18.02■□□□□ 0.47
CCDC88A-211ENST00000471947 WDR7Q9Y4E6 1490 aa18.02■□□□□ 0.47
CCDC88A-211ENST00000471947 PRAM1Q96QH2 718 aa18.01■□□□□ 0.47
CCDC88A-211ENST00000471947 CEBPAP49715 358 aaPredicted RBP18.01■□□□□ 0.47
CCDC88A-211ENST00000471947 MTHFSP49914 203 aa18.01■□□□□ 0.47
CCDC88A-211ENST00000471947 NOS1P29475 1434 aa18■□□□□ 0.47
CCDC88A-211ENST00000471947 ELL2O00472 640 aaPredicted RBP17.99■□□□□ 0.47
CCDC88A-211ENST00000471947 VGFO15240 615 aaPredicted RBP17.99■□□□□ 0.47
CCDC88A-211ENST00000471947 GOLGA2Q08379 1002 aa17.99■□□□□ 0.47
CCDC88A-211ENST00000471947 RBM33Q96EV2 1170 aaKnown RBP17.99■□□□□ 0.47
CCDC88A-211ENST00000471947 RALGAPBQ86X10 1494 aa17.98■□□□□ 0.47
CCDC88A-211ENST00000471947 ANP32AP39687 249 aaKnown RBP17.97■□□□□ 0.47
CCDC88A-211ENST00000471947 TXNDC2Q86VQ3 553 aa17.97■□□□□ 0.47
CCDC88A-211ENST00000471947 BCAR3O75815 825 aa17.96■□□□□ 0.47
CCDC88A-211ENST00000471947 CARD14Q9BXL6 1004 aa17.96■□□□□ 0.47
CCDC88A-211ENST00000471947 DAXXQ9UER7 740 aaPredicted RBP17.96■□□□□ 0.47
CCDC88A-211ENST00000471947 BRD4O60885 1362 aaPredicted RBP17.96■□□□□ 0.47
CCDC88A-211ENST00000471947 CFAP53Q96M91 514 aa17.96■□□□□ 0.47
CCDC88A-211ENST00000471947 EIF3AQ14152 1382 aaKnown RBP17.96■□□□□ 0.47
CCDC88A-211ENST00000471947 SHANK2Q9UPX8 1470 aa17.94■□□□□ 0.46
CCDC88A-211ENST00000471947 NEFMP07197 916 aa17.93■□□□□ 0.46
CCDC88A-211ENST00000471947 SLC26A8Q96RN1 970 aa17.93■□□□□ 0.46
CCDC88A-211ENST00000471947 HMOX1P09601 288 aa17.93■□□□□ 0.46
CCDC88A-211ENST00000471947 BCORL1Q5H9F3 1711 aa17.93■□□□□ 0.46
CCDC88A-211ENST00000471947 LMOD2Q6P5Q4 547 aa17.93■□□□□ 0.46
CCDC88A-211ENST00000471947 CDC42BPBQ9Y5S2 1711 aa17.92■□□□□ 0.46
CCDC88A-211ENST00000471947 NCKAP5LQ9HCH0 1330 aa17.92■□□□□ 0.46
CCDC88A-211ENST00000471947 AMER1Q5JTC6 1135 aaPredicted RBP17.92■□□□□ 0.46
CCDC88A-211ENST00000471947 CABP1Q9NZU7 370 aa17.92■□□□□ 0.46
CCDC88A-211ENST00000471947 COG6Q9Y2V7 657 aa17.92■□□□□ 0.46
CCDC88A-211ENST00000471947 DUOX2Q9NRD8 1548 aa17.91■□□□□ 0.46
CCDC88A-211ENST00000471947 NUTM2GQ5VZR2 741 aa17.9■□□□□ 0.46
CCDC88A-211ENST00000471947 SLC4A3P48751 1232 aa17.9■□□□□ 0.46
CCDC88A-211ENST00000471947 PANK1Q8TE04 598 aa17.9■□□□□ 0.46
CCDC88A-211ENST00000471947 SPINK5Q9NQ38 1064 aaPredicted RBP17.9■□□□□ 0.46
CCDC88A-211ENST00000471947 DMRT2Q9Y5R5 561 aa17.89■□□□□ 0.46
CCDC88A-211ENST00000471947 ZCCHC11Q5TAX3 1644 aaKnown RBP17.89■□□□□ 0.46
CCDC88A-211ENST00000471947 MAPK8IP3Q9UPT6 1336 aa17.89■□□□□ 0.45
CCDC88A-211ENST00000471947 EVC2Q86UK5 1308 aa17.89■□□□□ 0.45
CCDC88A-211ENST00000471947 TSR2Q969E8 191 aaKnown RBP17.88■□□□□ 0.45
CCDC88A-211ENST00000471947 ANP32EQ9BTT0 268 aa17.88■□□□□ 0.45
CCDC88A-211ENST00000471947 TCP11L2Q8N4U5 519 aa17.88■□□□□ 0.45
CCDC88A-211ENST00000471947 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.88■□□□□ 0.45
CCDC88A-211ENST00000471947 ADGBQ8N7X0 1667 aa17.88■□□□□ 0.45
CCDC88A-211ENST00000471947 ZBTB47Q9UFB7 747 aaPredicted RBP17.85■□□□□ 0.45
CCDC88A-211ENST00000471947 UHRF1BP1Q6BDS2 1440 aa17.85■□□□□ 0.45
CCDC88A-211ENST00000471947 NSD3Q9BZ95 1437 aa17.85■□□□□ 0.45
CCDC88A-211ENST00000471947 PREX2Q70Z35 1606 aa17.85■□□□□ 0.45
CCDC88A-211ENST00000471947 MSH5O43196 834 aa17.85■□□□□ 0.45
CCDC88A-211ENST00000471947 HDGFL2Q7Z4V5 671 aaPredicted RBP17.85■□□□□ 0.45
CCDC88A-211ENST00000471947 CGNL1Q0VF96 1302 aa17.85■□□□□ 0.45
CCDC88A-211ENST00000471947 CDK19Q9BWU1 502 aa17.84■□□□□ 0.45
CCDC88A-211ENST00000471947 PAK3O75914 559 aaPredicted RBP17.84■□□□□ 0.45
CCDC88A-211ENST00000471947 YEATS2Q9ULM3 1422 aa17.84■□□□□ 0.45
CCDC88A-211ENST00000471947 LTV1Q96GA3 475 aaPredicted RBP17.84■□□□□ 0.45
CCDC88A-211ENST00000471947 ZRANB1Q9UGI0 708 aa17.84■□□□□ 0.45
CCDC88A-211ENST00000471947 PMFBP1Q8TBY8 1022 aa17.83■□□□□ 0.45
CCDC88A-211ENST00000471947 THUMPD2Q9BTF0 503 aaKnown RBP17.83■□□□□ 0.45
CCDC88A-211ENST00000471947 MYO5CQ9NQX4 1742 aa17.82■□□□□ 0.44
CCDC88A-211ENST00000471947 ATP10AO60312 1499 aa17.82■□□□□ 0.44
CCDC88A-211ENST00000471947 FTSJ3Q8IY81 847 aaKnown RBP17.82■□□□□ 0.44
CCDC88A-211ENST00000471947 C14orf93Q9H972 538 aaKnown RBP17.82■□□□□ 0.44
CCDC88A-211ENST00000471947 RRS1Q15050 365 aaKnown RBP17.81■□□□□ 0.44
CCDC88A-211ENST00000471947 TNNQ9UQP3 1299 aa17.81■□□□□ 0.44
CCDC88A-211ENST00000471947 ATP7AQ04656 1500 aa17.81■□□□□ 0.44
CCDC88A-211ENST00000471947 SMG6Q86US8 1419 aaKnown RBP17.81■□□□□ 0.44
CCDC88A-211ENST00000471947 TERF2IPQ9NYB0 399 aa17.81■□□□□ 0.44
CCDC88A-211ENST00000471947 KDM5CP41229 1560 aa17.8■□□□□ 0.44
CCDC88A-211ENST00000471947 ARHGEF5Q12774 1597 aa17.8■□□□□ 0.44
CCDC88A-211ENST00000471947 PARD3Q8TEW0 1356 aa17.8■□□□□ 0.44
CCDC88A-211ENST00000471947 SCAF11Q99590 1463 aaKnown RBP17.79■□□□□ 0.44
CCDC88A-211ENST00000471947 PDE3BQ13370 1112 aa17.79■□□□□ 0.44
CCDC88A-211ENST00000471947 PLEKHH1Q9ULM0 1364 aa17.79■□□□□ 0.44
CCDC88A-211ENST00000471947 ADCY10Q96PN6 1610 aa17.78■□□□□ 0.44
CCDC88A-211ENST00000471947 RTL5Q5HYW3 569 aaPredicted RBP17.78■□□□□ 0.44
CCDC88A-211ENST00000471947 MAGI2Q86UL8 1455 aa17.78■□□□□ 0.44
CCDC88A-211ENST00000471947 APBB1O00213 710 aa17.77■□□□□ 0.44
CCDC88A-211ENST00000471947 ARXQ96QS3 562 aa17.77■□□□□ 0.44
CCDC88A-211ENST00000471947 ABCC1P33527 1531 aa17.77■□□□□ 0.44
CCDC88A-211ENST00000471947 SPRYD3Q8NCJ5 442 aa17.76■□□□□ 0.43
CCDC88A-211ENST00000471947 SMC4Q9NTJ3 1288 aa17.76■□□□□ 0.43
CCDC88A-211ENST00000471947 NPATQ14207 1427 aa17.76■□□□□ 0.43
CCDC88A-211ENST00000471947 ZNF518AQ6AHZ1 1483 aa17.75■□□□□ 0.43
CCDC88A-211ENST00000471947 RIPK4P57078 832 aa17.75■□□□□ 0.43
CCDC88A-211ENST00000471947 KDM5DQ9BY66 1539 aa17.75■□□□□ 0.43
CCDC88A-211ENST00000471947 DUSP27Q5VZP5 1158 aa17.74■□□□□ 0.43
CCDC88A-211ENST00000471947 MAST1Q9Y2H9 1570 aa17.74■□□□□ 0.43
CCDC88A-211ENST00000471947 PDE4AP27815 886 aa17.74■□□□□ 0.43
CCDC88A-211ENST00000471947 NME9Q86XW9 330 aa17.74■□□□□ 0.43
CCDC88A-211ENST00000471947 ITPRIPQ8IWB1 547 aa17.74■□□□□ 0.43
CCDC88A-211ENST00000471947 SLC52A1Q9NWF4 448 aa17.74■□□□□ 0.43
CCDC88A-211ENST00000471947 COL17A1Q9UMD9 1497 aaPredicted RBP17.73■□□□□ 0.43
CCDC88A-211ENST00000471947 ZNF428Q96B54 188 aa17.73■□□□□ 0.43
CCDC88A-211ENST00000471947 EMILIN1Q9Y6C2 1016 aa17.73■□□□□ 0.43
CCDC88A-211ENST00000471947 WWC1Q8IX03 1113 aa17.73■□□□□ 0.43
CCDC88A-211ENST00000471947 CROCC2H7BZ55 1655 aa17.72■□□□□ 0.43
CCDC88A-211ENST00000471947 NOP58Q9Y2X3 529 aaKnown RBP17.72■□□□□ 0.43
CCDC88A-211ENST00000471947 ERICH6BQ5W0A0 696 aa17.72■□□□□ 0.43
CCDC88A-211ENST00000471947 DCTN1Q14203 1278 aa17.72■□□□□ 0.43
CCDC88A-211ENST00000471947 NGDNQ8NEJ9 315 aaKnown RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms