RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 TCP11L2Q8N4U5 519 aa13.57□□□□□ -0.24
CHD3-208ENST00000470531 CARMIL2Q6F5E8 1435 aa13.57□□□□□ -0.24
CHD3-208ENST00000470531 DNMBPQ6XZF7 1577 aa13.56□□□□□ -0.24
CHD3-208ENST00000470531 SEC24BO95487 1268 aa13.56□□□□□ -0.24
CHD3-208ENST00000470531 EFCAB2Q5VUJ9 269 aa13.56□□□□□ -0.24
CHD3-208ENST00000470531 AEBP2Q6ZN18 517 aaPredicted RBP13.56□□□□□ -0.24
CHD3-208ENST00000470531 C14orf37Q86TY3 774 aa13.56□□□□□ -0.24
CHD3-208ENST00000470531 DISP3Q9P2K9 1392 aa13.56□□□□□ -0.24
CHD3-208ENST00000470531 CUL7Q14999 1698 aa13.55□□□□□ -0.24
CHD3-208ENST00000470531 FBLN1P23142 703 aa13.55□□□□□ -0.24
CHD3-208ENST00000470531 PZPP20742 1482 aa13.55□□□□□ -0.24
CHD3-208ENST00000470531 C8orf34Q49A92 452 aa13.55□□□□□ -0.24
CHD3-208ENST00000470531 RWDD1Q9H446 243 aaPredicted RBP13.55□□□□□ -0.24
CHD3-208ENST00000470531 CABP2Q9NPB3 220 aa13.55□□□□□ -0.24
CHD3-208ENST00000470531 MYH16Q9H6N6 1097 aa13.54□□□□□ -0.24
CHD3-208ENST00000470531 CC2D2AQ9P2K1 1620 aa13.54□□□□□ -0.24
CHD3-208ENST00000470531 MINK1Q8N4C8 1332 aaPredicted RBP13.54□□□□□ -0.24
CHD3-208ENST00000470531 SAMD9Q5K651 1589 aa13.54□□□□□ -0.24
CHD3-208ENST00000470531 E9PSI1 815 aa13.54□□□□□ -0.24
CHD3-208ENST00000470531 DMRT2Q9Y5R5 561 aa13.54□□□□□ -0.24
CHD3-208ENST00000470531 HMOX1P09601 288 aa13.53□□□□□ -0.24
CHD3-208ENST00000470531 PDIA4P13667 645 aaKnown RBP13.53□□□□□ -0.24
CHD3-208ENST00000470531 ANKRD45Q5TZF3 282 aa13.53□□□□□ -0.24
CHD3-208ENST00000470531 PDZRN3Q9UPQ7 1066 aa13.53□□□□□ -0.24
CHD3-208ENST00000470531 ARHGEF11O15085 1522 aa13.53□□□□□ -0.24
CHD3-208ENST00000470531 DUSP27Q5VZP5 1158 aa13.53□□□□□ -0.24
CHD3-208ENST00000470531 ZNF428Q96B54 188 aa13.53□□□□□ -0.24
CHD3-208ENST00000470531 RSPH6AQ9H0K4 717 aa13.53□□□□□ -0.24
CHD3-208ENST00000470531 GOLGA6L3A6NEY3 463 aa13.52□□□□□ -0.24
CHD3-208ENST00000470531 PTPRGP23470 1445 aa13.52□□□□□ -0.24
CHD3-208ENST00000470531 C9orf84Q5VXU9 1444 aa13.52□□□□□ -0.25
CHD3-208ENST00000470531 PNNQ9H307 717 aaKnown RBP13.52□□□□□ -0.25
CHD3-208ENST00000470531 ABCA5Q8WWZ7 1642 aa13.51□□□□□ -0.25
CHD3-208ENST00000470531 HSP90AA2PQ14568 343 aaPredicted RBP13.51□□□□□ -0.25
CHD3-208ENST00000470531 URB2Q14146 1524 aaKnown RBP13.5□□□□□ -0.25
CHD3-208ENST00000470531 MPNDQ8N594 471 aa13.5□□□□□ -0.25
CHD3-208ENST00000470531 BCL11BQ9C0K0 894 aaPredicted RBP13.5□□□□□ -0.25
CHD3-208ENST00000470531 ZNF608Q9ULD9 1512 aaPredicted RBP13.5□□□□□ -0.25
CHD3-208ENST00000470531 ROCK1Q13464 1354 aa13.5□□□□□ -0.25
CHD3-208ENST00000470531 KDM5CP41229 1560 aa13.5□□□□□ -0.25
CHD3-208ENST00000470531 THUMPD2Q9BTF0 503 aaKnown RBP13.49□□□□□ -0.25
CHD3-208ENST00000470531 NECTIN2Q92692 538 aa13.49□□□□□ -0.25
CHD3-208ENST00000470531 SLC4A10Q6U841 1118 aa13.49□□□□□ -0.25
CHD3-208ENST00000470531 RBM10P98175 930 aaKnown RBP13.48□□□□□ -0.25
CHD3-208ENST00000470531 EXOSC9Q06265 439 aaKnown RBP13.48□□□□□ -0.25
CHD3-208ENST00000470531 AMER1Q5JTC6 1135 aaPredicted RBP13.48□□□□□ -0.25
CHD3-208ENST00000470531 PMFBP1Q8TBY8 1022 aa13.48□□□□□ -0.25
CHD3-208ENST00000470531 PER1O15534 1290 aaPredicted RBP13.48□□□□□ -0.25
CHD3-208ENST00000470531 SLFN5Q08AF3 891 aa13.48□□□□□ -0.25
CHD3-208ENST00000470531 KDM2BQ8NHM5 1336 aa13.47□□□□□ -0.25
CHD3-208ENST00000470531 POLR1AO95602 1720 aaPredicted RBP13.46□□□□□ -0.25
CHD3-208ENST00000470531 RIPK4P57078 832 aa13.46□□□□□ -0.25
CHD3-208ENST00000470531 CGNL1Q0VF96 1302 aa13.46□□□□□ -0.25
CHD3-208ENST00000470531 DZIP1LQ8IYY4 767 aaKnown RBP13.46□□□□□ -0.25
CHD3-208ENST00000470531 ESF1Q9H501 851 aaKnown RBP13.46□□□□□ -0.25
CHD3-208ENST00000470531 LAMC3Q9Y6N6 1575 aa13.46□□□□□ -0.26
CHD3-208ENST00000470531 PLEKHH1Q9ULM0 1364 aa13.46□□□□□ -0.26
CHD3-208ENST00000470531 DNTTIP2Q5QJE6 756 aaKnown RBP13.46□□□□□ -0.26
CHD3-208ENST00000470531 ZKSCAN2Q63HK3 967 aa13.46□□□□□ -0.26
CHD3-208ENST00000470531 C22orf23Q9BZE7 217 aa13.46□□□□□ -0.26
CHD3-208ENST00000470531 RRAGDQ9NQL2 400 aaPredicted RBP13.46□□□□□ -0.26
CHD3-208ENST00000470531 PARD3Q8TEW0 1356 aa13.45□□□□□ -0.26
CHD3-208ENST00000470531 PTMAP06454 111 aaKnown RBP13.45□□□□□ -0.26
CHD3-208ENST00000470531 WWC1Q8IX03 1113 aa13.45□□□□□ -0.26
CHD3-208ENST00000470531 TROQ12816 1431 aaPredicted RBP13.45□□□□□ -0.26
CHD3-208ENST00000470531 MBD5Q9P267 1494 aa13.45□□□□□ -0.26
CHD3-208ENST00000470531 CAMSAP2Q08AD1 1489 aa13.44□□□□□ -0.26
CHD3-208ENST00000470531 ERBINQ96RT1 1412 aa13.44□□□□□ -0.26
CHD3-208ENST00000470531 GOLGA6L22H0YM25 854 aa13.44□□□□□ -0.26
CHD3-208ENST00000470531 RLBP1P12271 317 aa13.43□□□□□ -0.26
CHD3-208ENST00000470531 L1TD1Q5T7N2 865 aaKnown RBP13.43□□□□□ -0.26
CHD3-208ENST00000470531 PCDHB15Q9Y5E8 787 aa13.43□□□□□ -0.26
CHD3-208ENST00000470531 KIF14Q15058 1648 aa13.43□□□□□ -0.26
CHD3-208ENST00000470531 RALGAPBQ86X10 1494 aa13.43□□□□□ -0.26
CHD3-208ENST00000470531 PANK2Q9BZ23 570 aa13.43□□□□□ -0.26
CHD3-208ENST00000470531 FAM43AQ8N2R8 423 aa13.42□□□□□ -0.26
CHD3-208ENST00000470531 TESK2Q96S53 571 aa13.42□□□□□ -0.26
CHD3-208ENST00000470531 KIAA0586Q9BVV6 1533 aa13.42□□□□□ -0.26
CHD3-208ENST00000470531 DNMT1P26358 1616 aaKnown RBP13.42□□□□□ -0.26
CHD3-208ENST00000470531 KANK1Q14678 1352 aa13.42□□□□□ -0.26
CHD3-208ENST00000470531 RUNDC1Q96C34 613 aa13.41□□□□□ -0.26
CHD3-208ENST00000470531 NOB1Q9ULX3 412 aaKnown RBP13.41□□□□□ -0.26
CHD3-208ENST00000470531 ADGRF5Q8IZF2 1346 aa13.41□□□□□ -0.26
CHD3-208ENST00000470531 WDR62O43379 1518 aa13.4□□□□□ -0.26
CHD3-208ENST00000470531 IQGAP2Q13576 1575 aa13.4□□□□□ -0.26
CHD3-208ENST00000470531 TRAK2O60296 914 aa13.4□□□□□ -0.26
CHD3-208ENST00000470531 LMOD2Q6P5Q4 547 aa13.4□□□□□ -0.26
CHD3-208ENST00000470531 DDX49Q9Y6V7 483 aaKnown RBP13.39□□□□□ -0.27
CHD3-208ENST00000470531 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.39□□□□□ -0.27
CHD3-208ENST00000470531 LTV1Q96GA3 475 aaPredicted RBP13.39□□□□□ -0.27
CHD3-208ENST00000470531 TBC1D2Q9BYX2 928 aa13.39□□□□□ -0.27
CHD3-208ENST00000470531 NUP153P49790 1475 aaKnown RBP13.38□□□□□ -0.27
CHD3-208ENST00000470531 RARSP54136 660 aaKnown RBP13.37□□□□□ -0.27
CHD3-208ENST00000470531 DCTN1Q14203 1278 aa13.37□□□□□ -0.27
CHD3-208ENST00000470531 RSPH4AQ5TD94 716 aa13.37□□□□□ -0.27
CHD3-208ENST00000470531 IPO8O15397 1037 aaKnown RBP13.36□□□□□ -0.27
CHD3-208ENST00000470531 RNF214Q8ND24 703 aa13.36□□□□□ -0.27
CHD3-208ENST00000470531 PLEKHH2Q8IVE3 1493 aa13.36□□□□□ -0.27
CHD3-208ENST00000470531 TRIM6-TRIM34B2RNG4 842 aa13.36□□□□□ -0.27
CHD3-208ENST00000470531 GPATCH8Q9UKJ3 1502 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms