RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 NKX2-3Q8TAU0 364 aa10.92□□□□□ -0.66
CCDC88A-210ENST00000468534 FECHP22830 423 aa10.91□□□□□ -0.66
CCDC88A-210ENST00000468534 PCDHB3Q9Y5E6 796 aa10.91□□□□□ -0.66
CCDC88A-210ENST00000468534 PPP1R18Q6NYC8 613 aa10.9□□□□□ -0.66
CCDC88A-210ENST00000468534 PXYLP1Q8TE99 480 aa10.9□□□□□ -0.66
CCDC88A-210ENST00000468534 GNPATO15228 680 aa10.89□□□□□ -0.67
CCDC88A-210ENST00000468534 PRR14Q9BWN1 585 aa10.89□□□□□ -0.67
CCDC88A-210ENST00000468534 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.88□□□□□ -0.67
CCDC88A-210ENST00000468534 OATP04181 439 aa10.88□□□□□ -0.67
CCDC88A-210ENST00000468534 CFHP08603 1231 aa10.88□□□□□ -0.67
CCDC88A-210ENST00000468534 BLOC1S3Q6QNY0 202 aa10.88□□□□□ -0.67
CCDC88A-210ENST00000468534 GPR37O15354 613 aa10.87□□□□□ -0.67
CCDC88A-210ENST00000468534 KMT5BQ4FZB7 885 aa10.86□□□□□ -0.67
CCDC88A-210ENST00000468534 METTL3Q86U44 580 aaKnown RBP10.86□□□□□ -0.67
CCDC88A-210ENST00000468534 GPIHBP1Q8IV16 184 aa10.86□□□□□ -0.67
CCDC88A-210ENST00000468534 ZPR1O75312 459 aa10.85□□□□□ -0.67
CCDC88A-210ENST00000468534 SLC10A3P09131 477 aa10.85□□□□□ -0.67
CCDC88A-210ENST00000468534 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-210ENST00000468534 VSIG10Q8N0Z9 540 aa10.84□□□□□ -0.67
CCDC88A-210ENST00000468534 NLRP7Q8WX94 980 aa10.84□□□□□ -0.67
CCDC88A-210ENST00000468534 PRKD2Q9BZL6 878 aa10.84□□□□□ -0.67
CCDC88A-210ENST00000468534 TLL1O43897 1013 aa10.83□□□□□ -0.68
CCDC88A-210ENST00000468534 ACTN4O43707 911 aaKnown RBP10.82□□□□□ -0.68
CCDC88A-210ENST00000468534 GGCXP38435 758 aa10.81□□□□□ -0.68
CCDC88A-210ENST00000468534 Q6ZNB5 142 aa10.79□□□□□ -0.68
CCDC88A-210ENST00000468534 RDH13Q8NBN7 331 aa10.79□□□□□ -0.68
CCDC88A-210ENST00000468534 RSPH4AQ5TD94 716 aa10.78□□□□□ -0.68
CCDC88A-210ENST00000468534 DDX11L8A8MPP1 907 aa10.77□□□□□ -0.69
CCDC88A-210ENST00000468534 PUS10Q3MIT2 529 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-210ENST00000468534 TULP1O00294 542 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-210ENST00000468534 PHOX2BQ99453 314 aa10.76□□□□□ -0.69
CCDC88A-210ENST00000468534 DAXXQ9UER7 740 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-210ENST00000468534 GFRA3O60609 400 aa10.74□□□□□ -0.69
CCDC88A-210ENST00000468534 RNF223E7ERA6 249 aa10.73□□□□□ -0.69
CCDC88A-210ENST00000468534 NR1I2O75469 434 aa10.73□□□□□ -0.69
CCDC88A-210ENST00000468534 S1PR4O95977 384 aa10.73□□□□□ -0.69
CCDC88A-210ENST00000468534 TMUB1Q9BVT8 246 aa10.73□□□□□ -0.69
CCDC88A-210ENST00000468534 V9GY48 417 aaPredicted RBP10.73□□□□□ -0.69
CCDC88A-210ENST00000468534 PPEF1O14829 653 aaPredicted RBP10.72□□□□□ -0.69
CCDC88A-210ENST00000468534 ADH1BP00325 375 aa10.7□□□□□ -0.7
CCDC88A-210ENST00000468534 SCUBE3Q8IX30 993 aa10.69□□□□□ -0.7
CCDC88A-210ENST00000468534 FUT2Q10981 343 aa10.68□□□□□ -0.7
CCDC88A-210ENST00000468534 MAP2K5Q13163 448 aa10.68□□□□□ -0.7
CCDC88A-210ENST00000468534 LAPTM4AQ15012 233 aa10.68□□□□□ -0.7
CCDC88A-210ENST00000468534 SULF1Q8IWU6 871 aa10.68□□□□□ -0.7
CCDC88A-210ENST00000468534 SLC6A16Q9GZN6 736 aa10.67□□□□□ -0.7
CCDC88A-210ENST00000468534 SLC19A1P41440 591 aa10.66□□□□□ -0.7
CCDC88A-210ENST00000468534 PDZRN3Q9UPQ7 1066 aa10.66□□□□□ -0.7
CCDC88A-210ENST00000468534 GCGRP47871 477 aa10.65□□□□□ -0.7
CCDC88A-210ENST00000468534 ANKLE1Q8NAG6 615 aa10.65□□□□□ -0.7
CCDC88A-210ENST00000468534 SPSB2Q99619 263 aa10.65□□□□□ -0.7
CCDC88A-210ENST00000468534 MORN1Q5T089 497 aa10.64□□□□□ -0.71
CCDC88A-210ENST00000468534 EMID1Q96A84 441 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-210ENST00000468534 NRG2O14511 850 aaPredicted RBP10.63□□□□□ -0.71
CCDC88A-210ENST00000468534 IRF6O14896 467 aa10.63□□□□□ -0.71
CCDC88A-210ENST00000468534 ATP6V1AP38606 617 aa10.63□□□□□ -0.71
CCDC88A-210ENST00000468534 MDM2Q00987 491 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-210ENST00000468534 SLC27A5Q9Y2P5 690 aa10.62□□□□□ -0.71
CCDC88A-210ENST00000468534 LIAT1Q6ZQX7 453 aa10.61□□□□□ -0.71
CCDC88A-210ENST00000468534 CCDC102AQ96A19 550 aa10.61□□□□□ -0.71
CCDC88A-210ENST00000468534 MINK1Q8N4C8 1332 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-210ENST00000468534 LCE2BO14633 110 aa10.59□□□□□ -0.71
CCDC88A-210ENST00000468534 PLA2G2CQ5R387 149 aa10.59□□□□□ -0.71
CCDC88A-210ENST00000468534 SPRYD7Q5W111 196 aa10.59□□□□□ -0.71
CCDC88A-210ENST00000468534 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.59□□□□□ -0.71
CCDC88A-210ENST00000468534 FMNL1O95466 1100 aaPredicted RBP10.58□□□□□ -0.72
CCDC88A-210ENST00000468534 TRAF7Q6Q0C0 670 aa10.58□□□□□ -0.72
CCDC88A-210ENST00000468534 CD46P15529 392 aa10.57□□□□□ -0.72
CCDC88A-210ENST00000468534 ZNF697Q5TEC3 545 aa10.57□□□□□ -0.72
CCDC88A-210ENST00000468534 LMOD2Q6P5Q4 547 aa10.57□□□□□ -0.72
CCDC88A-210ENST00000468534 THAP11Q96EK4 314 aa10.57□□□□□ -0.72
CCDC88A-210ENST00000468534 PRDM9Q9NQV7 894 aa10.57□□□□□ -0.72
CCDC88A-210ENST00000468534 GRIPAP1Q4V328 841 aa10.56□□□□□ -0.72
CCDC88A-210ENST00000468534 TRIM67Q6ZTA4 783 aa10.56□□□□□ -0.72
CCDC88A-210ENST00000468534 ZNF598Q86UK7 904 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-210ENST00000468534 RNF19BQ6ZMZ0 732 aa10.55□□□□□ -0.72
CCDC88A-210ENST00000468534 TNFRSF10AO00220 468 aa10.54□□□□□ -0.72
CCDC88A-210ENST00000468534 FAM160A2Q8N612 972 aaPredicted RBP10.54□□□□□ -0.72
CCDC88A-210ENST00000468534 FCF1Q9Y324 198 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-210ENST00000468534 KDM4AO75164 1064 aa10.53□□□□□ -0.72
CCDC88A-210ENST00000468534 BRICD5Q6PL45 260 aa10.53□□□□□ -0.72
CCDC88A-210ENST00000468534 KRI1Q8N9T8 703 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-210ENST00000468534 HLA-CQ95604 372 aa10.52□□□□□ -0.73
CCDC88A-210ENST00000468534 GPCPD1Q9NPB8 672 aa10.51□□□□□ -0.73
CCDC88A-210ENST00000468534 CLCN1P35523 988 aa10.5□□□□□ -0.73
CCDC88A-210ENST00000468534 FOXC1Q12948 553 aa10.49□□□□□ -0.73
CCDC88A-210ENST00000468534 Q3C1V9 767 aa10.49□□□□□ -0.73
CCDC88A-210ENST00000468534 SALL2Q9Y467 1007 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-210ENST00000468534 PKDCCQ504Y2 493 aa10.48□□□□□ -0.73
CCDC88A-210ENST00000468534 FAM217BQ9NTX9 383 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-210ENST00000468534 GUCA2AQ02747 115 aa10.47□□□□□ -0.73
CCDC88A-210ENST00000468534 MSS51Q4VC12 460 aa10.47□□□□□ -0.73
CCDC88A-210ENST00000468534 FAM187AA6NFU0 413 aa10.46□□□□□ -0.73
CCDC88A-210ENST00000468534 HOXA2O43364 376 aa10.46□□□□□ -0.73
CCDC88A-210ENST00000468534 GDF9O60383 454 aa10.46□□□□□ -0.73
CCDC88A-210ENST00000468534 PRR20EP86478 221 aa10.46□□□□□ -0.73
CCDC88A-210ENST00000468534 PRR20CP86479 221 aa10.46□□□□□ -0.73
CCDC88A-210ENST00000468534 PRR20DP86480 221 aa10.46□□□□□ -0.73
CCDC88A-210ENST00000468534 PRR20BP86481 221 aa10.46□□□□□ -0.73
CCDC88A-210ENST00000468534 PRR20AP86496 221 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms