RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 SENP3Q9H4L4 574 aaPredicted RBP37.52■■■■□ 3.6
PTCH1-210ENST00000468211 MED1Q15648 1581 aaPredicted RBP37.51■■■■□ 3.59
PTCH1-210ENST00000468211 KCNA6P17658 529 aa37.49■■■■□ 3.59
PTCH1-210ENST00000468211 RIMS2Q9UQ26 1411 aa37.48■■■■□ 3.59
PTCH1-210ENST00000468211 NUP155O75694 1391 aa37.48■■■■□ 3.59
PTCH1-210ENST00000468211 TMEM94Q12767 1356 aa37.46■■■■□ 3.59
PTCH1-210ENST00000468211 SOCS7O14512 581 aa37.46■■■■□ 3.59
PTCH1-210ENST00000468211 NWD1Q149M9 1564 aa37.46■■■■□ 3.59
PTCH1-210ENST00000468211 BCANQ96GW7 911 aa37.44■■■■□ 3.58
PTCH1-210ENST00000468211 RBM33Q96EV2 1170 aaKnown RBP37.43■■■■□ 3.58
PTCH1-210ENST00000468211 PLEKHG1Q9ULL1 1385 aa37.42■■■■□ 3.58
PTCH1-210ENST00000468211 CHGAP10645 457 aaKnown RBP37.41■■■■□ 3.58
PTCH1-210ENST00000468211 CHD2O14647 1828 aaKnown RBP37.4■■■■□ 3.58
PTCH1-210ENST00000468211 PROSER2Q86WR7 435 aaPredicted RBP37.4■■■■□ 3.58
PTCH1-210ENST00000468211 RRBP1Q9P2E9 1410 aaKnown RBP37.37■■■■□ 3.57
PTCH1-210ENST00000468211 PPP1R15AO75807 674 aaPredicted RBP37.37■■■■□ 3.57
PTCH1-210ENST00000468211 NKTRP30414 1462 aaKnown RBP37.37■■■■□ 3.57
PTCH1-210ENST00000468211 NUTM2DQ5VT03 806 aaPredicted RBP37.36■■■■□ 3.57
PTCH1-210ENST00000468211 HDGFP51858 240 aaKnown RBP37.33■■■■□ 3.57
PTCH1-210ENST00000468211 SPHKAPQ2M3C7 1700 aa37.32■■■■□ 3.56
PTCH1-210ENST00000468211 ABCF1Q8NE71 845 aaKnown RBP eCLIP37.29■■■■□ 3.56
PTCH1-210ENST00000468211 ADAMTS13Q76LX8 1427 aa37.28■■■■□ 3.56
PTCH1-210ENST00000468211 FAM135BQ49AJ0 1406 aa37.27■■■■□ 3.56
PTCH1-210ENST00000468211 TBX22Q9Y458 520 aa37.27■■■■□ 3.56
PTCH1-210ENST00000468211 ROBO1Q9Y6N7 1651 aa37.26■■■■□ 3.56
PTCH1-210ENST00000468211 NAIPQ13075 1403 aa37.24■■■■□ 3.55
PTCH1-210ENST00000468211 DIP2AQ14689 1571 aa37.2■■■■□ 3.55
PTCH1-210ENST00000468211 MSH6P52701 1360 aa37.19■■■■□ 3.54
PTCH1-210ENST00000468211 CLTCL1P53675 1640 aa37.15■■■■□ 3.54
PTCH1-210ENST00000468211 NRXN3Q9Y4C0 1643 aa37.14■■■■□ 3.54
PTCH1-210ENST00000468211 PHF23Q9BUL5 403 aaPredicted RBP37.14■■■■□ 3.54
PTCH1-210ENST00000468211 PIK3R4Q99570 1358 aa37.11■■■■□ 3.53
PTCH1-210ENST00000468211 PTPRUQ92729 1446 aa37.1■■■■□ 3.53
PTCH1-210ENST00000468211 TRPM2O94759 1503 aa37.1■■■■□ 3.53
PTCH1-210ENST00000468211 SLAIN2Q9P270 581 aa37.1■■■■□ 3.53
PTCH1-210ENST00000468211 SETBP1Q9Y6X0 1596 aa37.07■■■■□ 3.52
PTCH1-210ENST00000468211 SIPA1L2Q9P2F8 1722 aaPredicted RBP37.07■■■■□ 3.52
PTCH1-210ENST00000468211 HFM1A2PYH4 1435 aa37.06■■■■□ 3.52
PTCH1-210ENST00000468211 ZNF326Q5BKZ1 582 aaKnown RBP37.06■■■■□ 3.52
PTCH1-210ENST00000468211 NCOA3Q9Y6Q9 1424 aa37.06■■■■□ 3.52
PTCH1-210ENST00000468211 KIF1BO60333 1816 aa37.05■■■■□ 3.52
PTCH1-210ENST00000468211 PHLPP1O60346 1717 aa37.04■■■■□ 3.52
PTCH1-210ENST00000468211 AMOTL2Q9Y2J4 779 aa37.03■■■■□ 3.52
PTCH1-210ENST00000468211 NEXMIFQ5QGS0 1516 aa37.03■■■■□ 3.52
PTCH1-210ENST00000468211 C14orf37Q86TY3 774 aa37.01■■■■□ 3.52
PTCH1-210ENST00000468211 XRN1Q8IZH2 1706 aaKnown RBP37.01■■■■□ 3.51
PTCH1-210ENST00000468211 TRIM52Q96A61 297 aa37■■■■□ 3.51
PTCH1-210ENST00000468211 RGS17Q9UGC6 210 aaPredicted RBP37■■■■□ 3.51
PTCH1-210ENST00000468211 C19orf44Q9H6X5 657 aa36.96■■■■□ 3.51
PTCH1-210ENST00000468211 METP08581 1390 aa36.95■■■■□ 3.51
PTCH1-210ENST00000468211 COL16A1Q07092 1604 aaPredicted RBP36.92■■■■□ 3.5
PTCH1-210ENST00000468211 CADPS2Q86UW7 1296 aa36.9■■■■□ 3.5
PTCH1-210ENST00000468211 SLC4A1APQ9BWU0 796 aaKnown RBP36.9■■■■□ 3.5
PTCH1-210ENST00000468211 ATF3P18847 181 aa36.89■■■■□ 3.5
PTCH1-210ENST00000468211 SETD1AO15047 1707 aaKnown RBP36.84■■■■□ 3.49
PTCH1-210ENST00000468211 JCADQ9P266 1359 aa36.83■■■■□ 3.49
PTCH1-210ENST00000468211 AHDC1Q5TGY3 1603 aaPredicted RBP36.82■■■■□ 3.49
PTCH1-210ENST00000468211 FOXD1Q16676 465 aa36.81■■■■□ 3.48
PTCH1-210ENST00000468211 PPLO60437 1756 aa36.8■■■■□ 3.48
PTCH1-210ENST00000468211 DCCP43146 1447 aa36.79■■■■□ 3.48
PTCH1-210ENST00000468211 NALCNQ8IZF0 1738 aa36.77■■■■□ 3.48
PTCH1-210ENST00000468211 POTEAQ6S8J7 498 aa36.77■■■■□ 3.48
PTCH1-210ENST00000468211 BRINP3Q76B58 766 aa36.77■■■■□ 3.48
PTCH1-210ENST00000468211 MST1RQ04912 1400 aa36.74■■■■□ 3.47
PTCH1-210ENST00000468211 VGFO15240 615 aaPredicted RBP36.73■■■■□ 3.47
PTCH1-210ENST00000468211 ADGRL3Q9HAR2 1447 aa36.72■■■■□ 3.47
PTCH1-210ENST00000468211 SHPRHQ149N8 1683 aa36.71■■■■□ 3.47
PTCH1-210ENST00000468211 ASXL1Q8IXJ9 1541 aa36.71■■■■□ 3.47
PTCH1-210ENST00000468211 LRP6O75581 1613 aa36.7■■■■□ 3.47
PTCH1-210ENST00000468211 RPGRIP1LQ68CZ1 1315 aa36.7■■■■□ 3.47
PTCH1-210ENST00000468211 NHSL1Q5SYE7 1610 aa36.67■■■■□ 3.46
PTCH1-210ENST00000468211 MPHOSPH9Q99550 1183 aa36.65■■■■□ 3.46
PTCH1-210ENST00000468211 ROBO2Q9HCK4 1378 aa36.65■■■■□ 3.46
PTCH1-210ENST00000468211 SPATA31A6Q5VVP1 1343 aa36.63■■■■□ 3.45
PTCH1-210ENST00000468211 PTCH1Q13635 1447 aa36.63■■■■□ 3.45
PTCH1-210ENST00000468211 CCDC144AA2RUR9 1427 aa36.61■■■■□ 3.45
PTCH1-210ENST00000468211 IFT172Q9UG01 1749 aa36.6■■■■□ 3.45
PTCH1-210ENST00000468211 SPATA31E1Q6ZUB1 1445 aa36.59■■■■□ 3.45
PTCH1-210ENST00000468211 PRAG1Q86YV5 1406 aa36.59■■■■□ 3.45
PTCH1-210ENST00000468211 DDX17Q92841 729 aaKnown RBP36.58■■■■□ 3.45
PTCH1-210ENST00000468211 ADGRF5Q8IZF2 1346 aa36.58■■■■□ 3.45
PTCH1-210ENST00000468211 RGL3Q3MIN7 710 aa36.56■■■■□ 3.44
PTCH1-210ENST00000468211 SETD5Q9C0A6 1442 aa36.55■■■■□ 3.44
PTCH1-210ENST00000468211 C1orf167Q5SNV9 1468 aa36.53■■■■□ 3.44
PTCH1-210ENST00000468211 MEX3CQ5U5Q3 659 aaKnown RBP36.51■■■■□ 3.44
PTCH1-210ENST00000468211 NUTM2BA6NNL0 878 aaPredicted RBP36.49■■■■□ 3.43
PTCH1-210ENST00000468211 NUTM2EB1AL46 878 aaPredicted RBP36.49■■■■□ 3.43
PTCH1-210ENST00000468211 NUTM2AQ8IVF1 878 aaPredicted RBP36.49■■■■□ 3.43
PTCH1-210ENST00000468211 LAMC1P11047 1609 aa36.46■■■■□ 3.43
PTCH1-210ENST00000468211 ORAI2Q96SN7 254 aa36.45■■■■□ 3.43
PTCH1-210ENST00000468211 ANKRD30BQ9BXX2 1392 aa36.44■■■■□ 3.42
PTCH1-210ENST00000468211 LRRC59Q96AG4 307 aaKnown RBP36.44■■■■□ 3.42
PTCH1-210ENST00000468211 PNPLA6Q8IY17 1366 aa36.4■■■■□ 3.42
PTCH1-210ENST00000468211 PIK3C2GO75747 1445 aa36.4■■■■□ 3.42
PTCH1-210ENST00000468211 STK26Q9P289 416 aa36.39■■■■□ 3.42
PTCH1-210ENST00000468211 ZNF772Q68DY9 489 aaPredicted RBP36.38■■■■□ 3.41
PTCH1-210ENST00000468211 TMEM132EQ6IEE7 984 aa36.38■■■■□ 3.41
PTCH1-210ENST00000468211 RAB3GAP2Q9H2M9 1393 aa36.38■■■■□ 3.41
PTCH1-210ENST00000468211 CDC42BPGQ6DT37 1551 aa36.37■■■■□ 3.41
PTCH1-210ENST00000468211 KNDC1Q76NI1 1749 aa36.37■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms