RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 SLC26A8Q96RN1 970 aa29.36■■■□□ 2.29
COL9A3-206ENST00000466532 ZFYVE9O95405 1425 aa29.33■■■□□ 2.29
COL9A3-206ENST00000466532 NWD1Q149M9 1564 aa29.33■■■□□ 2.29
COL9A3-206ENST00000466532 CHD2O14647 1828 aaKnown RBP29.32■■■□□ 2.28
COL9A3-206ENST00000466532 KCNA6P17658 529 aa29.32■■■□□ 2.28
COL9A3-206ENST00000466532 BCANQ96GW7 911 aa29.32■■■□□ 2.28
COL9A3-206ENST00000466532 SENP3Q9H4L4 574 aaPredicted RBP29.32■■■□□ 2.28
COL9A3-206ENST00000466532 RIMS2Q9UQ26 1411 aa29.31■■■□□ 2.28
COL9A3-206ENST00000466532 NUP155O75694 1391 aa29.29■■■□□ 2.28
COL9A3-206ENST00000466532 TMEM94Q12767 1356 aa29.29■■■□□ 2.28
COL9A3-206ENST00000466532 NKTRP30414 1462 aaKnown RBP29.28■■■□□ 2.28
COL9A3-206ENST00000466532 PLEKHG1Q9ULL1 1385 aa29.27■■■□□ 2.28
COL9A3-206ENST00000466532 PPP1R15AO75807 674 aaPredicted RBP29.27■■■□□ 2.28
COL9A3-206ENST00000466532 CHGAP10645 457 aaKnown RBP29.27■■■□□ 2.28
COL9A3-206ENST00000466532 HDGFP51858 240 aaKnown RBP29.26■■■□□ 2.27
COL9A3-206ENST00000466532 SPHKAPQ2M3C7 1700 aa29.25■■■□□ 2.27
COL9A3-206ENST00000466532 PROSER2Q86WR7 435 aaPredicted RBP29.25■■■□□ 2.27
COL9A3-206ENST00000466532 RBM33Q96EV2 1170 aaKnown RBP29.21■■■□□ 2.27
COL9A3-206ENST00000466532 ROBO1Q9Y6N7 1651 aa29.21■■■□□ 2.27
COL9A3-206ENST00000466532 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.19■■■□□ 2.26
COL9A3-206ENST00000466532 RRBP1Q9P2E9 1410 aaKnown RBP29.18■■■□□ 2.26
COL9A3-206ENST00000466532 FAM135BQ49AJ0 1406 aa29.17■■■□□ 2.26
COL9A3-206ENST00000466532 DIP2AQ14689 1571 aa29.17■■■□□ 2.26
COL9A3-206ENST00000466532 NUTM2DQ5VT03 806 aaPredicted RBP29.16■■■□□ 2.26
COL9A3-206ENST00000466532 PHF23Q9BUL5 403 aaPredicted RBP29.14■■■□□ 2.26
COL9A3-206ENST00000466532 TBX22Q9Y458 520 aa29.14■■■□□ 2.26
COL9A3-206ENST00000466532 MSH6P52701 1360 aa29.13■■■□□ 2.25
COL9A3-206ENST00000466532 ADAMTS13Q76LX8 1427 aa29.12■■■□□ 2.25
COL9A3-206ENST00000466532 TRPM2O94759 1503 aa29.08■■■□□ 2.25
COL9A3-206ENST00000466532 KIF1BO60333 1816 aa29.08■■■□□ 2.25
COL9A3-206ENST00000466532 NAIPQ13075 1403 aa29.07■■■□□ 2.24
COL9A3-206ENST00000466532 PHLPP1O60346 1717 aa29.06■■■□□ 2.24
COL9A3-206ENST00000466532 CLTCL1P53675 1640 aa29.05■■■□□ 2.24
COL9A3-206ENST00000466532 NRXN3Q9Y4C0 1643 aa29.05■■■□□ 2.24
COL9A3-206ENST00000466532 PIK3R4Q99570 1358 aa29.05■■■□□ 2.24
COL9A3-206ENST00000466532 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.04■■■□□ 2.24
COL9A3-206ENST00000466532 NCOA3Q9Y6Q9 1424 aa29.03■■■□□ 2.24
COL9A3-206ENST00000466532 SLAIN2Q9P270 581 aa29.02■■■□□ 2.24
COL9A3-206ENST00000466532 SETBP1Q9Y6X0 1596 aa29.01■■■□□ 2.23
COL9A3-206ENST00000466532 ZNF326Q5BKZ1 582 aaKnown RBP29■■■□□ 2.23
COL9A3-206ENST00000466532 C14orf37Q86TY3 774 aa28.99■■■□□ 2.23
COL9A3-206ENST00000466532 XRN1Q8IZH2 1706 aaKnown RBP28.97■■■□□ 2.23
COL9A3-206ENST00000466532 PTPRUQ92729 1446 aa28.97■■■□□ 2.23
COL9A3-206ENST00000466532 HFM1A2PYH4 1435 aa28.96■■■□□ 2.23
COL9A3-206ENST00000466532 NEXMIFQ5QGS0 1516 aa28.96■■■□□ 2.23
COL9A3-206ENST00000466532 AMOTL2Q9Y2J4 779 aa28.95■■■□□ 2.22
COL9A3-206ENST00000466532 COL16A1Q07092 1604 aaPredicted RBP28.92■■■□□ 2.22
COL9A3-206ENST00000466532 TRIM52Q96A61 297 aa28.92■■■□□ 2.22
COL9A3-206ENST00000466532 C19orf44Q9H6X5 657 aa28.91■■■□□ 2.22
COL9A3-206ENST00000466532 CADPS2Q86UW7 1296 aa28.89■■■□□ 2.22
COL9A3-206ENST00000466532 RGS17Q9UGC6 210 aaPredicted RBP28.89■■■□□ 2.22
COL9A3-206ENST00000466532 ATF3P18847 181 aa28.88■■■□□ 2.21
COL9A3-206ENST00000466532 METP08581 1390 aa28.85■■■□□ 2.21
COL9A3-206ENST00000466532 JCADQ9P266 1359 aa28.85■■■□□ 2.21
COL9A3-206ENST00000466532 AHDC1Q5TGY3 1603 aaPredicted RBP28.84■■■□□ 2.21
COL9A3-206ENST00000466532 SETD1AO15047 1707 aaKnown RBP28.83■■■□□ 2.21
COL9A3-206ENST00000466532 PPLO60437 1756 aa28.83■■■□□ 2.21
COL9A3-206ENST00000466532 SLC4A1APQ9BWU0 796 aaKnown RBP28.83■■■□□ 2.21
COL9A3-206ENST00000466532 DCCP43146 1447 aa28.82■■■□□ 2.2
COL9A3-206ENST00000466532 NALCNQ8IZF0 1738 aa28.81■■■□□ 2.2
COL9A3-206ENST00000466532 SHPRHQ149N8 1683 aa28.8■■■□□ 2.2
COL9A3-206ENST00000466532 NHSL1Q5SYE7 1610 aa28.74■■■□□ 2.19
COL9A3-206ENST00000466532 VGFO15240 615 aaPredicted RBP28.74■■■□□ 2.19
COL9A3-206ENST00000466532 BRINP3Q76B58 766 aa28.74■■■□□ 2.19
COL9A3-206ENST00000466532 ASXL1Q8IXJ9 1541 aa28.74■■■□□ 2.19
COL9A3-206ENST00000466532 MST1RQ04912 1400 aa28.73■■■□□ 2.19
COL9A3-206ENST00000466532 POTEAQ6S8J7 498 aa28.73■■■□□ 2.19
COL9A3-206ENST00000466532 ADGRL3Q9HAR2 1447 aa28.73■■■□□ 2.19
COL9A3-206ENST00000466532 RPGRIP1LQ68CZ1 1315 aa28.71■■■□□ 2.19
COL9A3-206ENST00000466532 LRP6O75581 1613 aa28.7■■■□□ 2.19
COL9A3-206ENST00000466532 FOXD1Q16676 465 aa28.7■■■□□ 2.18
COL9A3-206ENST00000466532 SPATA31A6Q5VVP1 1343 aa28.69■■■□□ 2.18
COL9A3-206ENST00000466532 IFT172Q9UG01 1749 aa28.68■■■□□ 2.18
COL9A3-206ENST00000466532 PTCH1Q13635 1447 aa28.67■■■□□ 2.18
COL9A3-206ENST00000466532 CCDC144AA2RUR9 1427 aa28.64■■■□□ 2.18
COL9A3-206ENST00000466532 MEX3CQ5U5Q3 659 aaKnown RBP28.63■■■□□ 2.17
COL9A3-206ENST00000466532 ROBO2Q9HCK4 1378 aa28.62■■■□□ 2.17
COL9A3-206ENST00000466532 PRAG1Q86YV5 1406 aa28.61■■■□□ 2.17
COL9A3-206ENST00000466532 MPHOSPH9Q99550 1183 aa28.61■■■□□ 2.17
COL9A3-206ENST00000466532 SETD5Q9C0A6 1442 aa28.6■■■□□ 2.17
COL9A3-206ENST00000466532 SPATA31E1Q6ZUB1 1445 aa28.57■■■□□ 2.16
COL9A3-206ENST00000466532 C1orf167Q5SNV9 1468 aa28.57■■■□□ 2.16
COL9A3-206ENST00000466532 LAMC1P11047 1609 aa28.56■■■□□ 2.16
COL9A3-206ENST00000466532 RGL3Q3MIN7 710 aa28.55■■■□□ 2.16
COL9A3-206ENST00000466532 DDX17Q92841 729 aaKnown RBP28.55■■■□□ 2.16
COL9A3-206ENST00000466532 ADGRF5Q8IZF2 1346 aa28.54■■■□□ 2.16
COL9A3-206ENST00000466532 NUTM2BA6NNL0 878 aaPredicted RBP28.54■■■□□ 2.16
COL9A3-206ENST00000466532 NUTM2EB1AL46 878 aaPredicted RBP28.54■■■□□ 2.16
COL9A3-206ENST00000466532 NUTM2AQ8IVF1 878 aaPredicted RBP28.54■■■□□ 2.16
COL9A3-206ENST00000466532 LRRC59Q96AG4 307 aaKnown RBP28.53■■■□□ 2.16
COL9A3-206ENST00000466532 ZNF772Q68DY9 489 aaPredicted RBP28.52■■■□□ 2.16
COL9A3-206ENST00000466532 KNDC1Q76NI1 1749 aa28.52■■■□□ 2.16
COL9A3-206ENST00000466532 ANKRD30BQ9BXX2 1392 aa28.5■■■□□ 2.15
COL9A3-206ENST00000466532 CDC42BPGQ6DT37 1551 aa28.49■■■□□ 2.15
COL9A3-206ENST00000466532 ACIN1Q9UKV3 1341 aaKnown RBP28.48■■■□□ 2.15
COL9A3-206ENST00000466532 PNPLA6Q8IY17 1366 aa28.48■■■□□ 2.15
COL9A3-206ENST00000466532 ORAI2Q96SN7 254 aa28.46■■■□□ 2.15
COL9A3-206ENST00000466532 PIK3C2GO75747 1445 aa28.44■■■□□ 2.14
COL9A3-206ENST00000466532 TECPR2O15040 1411 aa28.43■■■□□ 2.14
COL9A3-206ENST00000466532 STK26Q9P289 416 aa28.43■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms