RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 BCANQ96GW7 911 aa33.11■■■□□ 2.89
CPNE1-220ENST00000458038 UNC13BO14795 1591 aa33.11■■■□□ 2.89
CPNE1-220ENST00000458038 NKTRP30414 1462 aaKnown RBP33.11■■■□□ 2.89
CPNE1-220ENST00000458038 SENP3Q9H4L4 574 aaPredicted RBP33.1■■■□□ 2.89
CPNE1-220ENST00000458038 ZFYVE9O95405 1425 aa33.08■■■□□ 2.89
CPNE1-220ENST00000458038 PLEKHG1Q9ULL1 1385 aa33.08■■■□□ 2.89
CPNE1-220ENST00000458038 NWD1Q149M9 1564 aa33.07■■■□□ 2.88
CPNE1-220ENST00000458038 MYO5BQ9ULV0 1848 aa33.07■■■□□ 2.88
CPNE1-220ENST00000458038 PPP1R15AO75807 674 aaPredicted RBP33.05■■■□□ 2.88
CPNE1-220ENST00000458038 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.05■■■□□ 2.88
CPNE1-220ENST00000458038 TMEM131LA2VDJ0 1609 aa33.05■■■□□ 2.88
CPNE1-220ENST00000458038 RIMS2Q9UQ26 1411 aa33.04■■■□□ 2.88
CPNE1-220ENST00000458038 CHD2O14647 1828 aaKnown RBP33■■■□□ 2.87
CPNE1-220ENST00000458038 MSH6P52701 1360 aa33■■■□□ 2.87
CPNE1-220ENST00000458038 TBX22Q9Y458 520 aa33■■■□□ 2.87
CPNE1-220ENST00000458038 E9PCH4 1651 aa33■■■□□ 2.87
CPNE1-220ENST00000458038 IQGAP3Q86VI3 1631 aa32.99■■■□□ 2.87
CPNE1-220ENST00000458038 CHGAP10645 457 aaKnown RBP32.96■■■□□ 2.87
CPNE1-220ENST00000458038 NUP155O75694 1391 aa32.95■■■□□ 2.86
CPNE1-220ENST00000458038 ROBO1Q9Y6N7 1651 aa32.94■■■□□ 2.86
CPNE1-220ENST00000458038 RBM33Q96EV2 1170 aaKnown RBP32.94■■■□□ 2.86
CPNE1-220ENST00000458038 NCOA3Q9Y6Q9 1424 aa32.94■■■□□ 2.86
CPNE1-220ENST00000458038 SLAIN2Q9P270 581 aa32.92■■■□□ 2.86
CPNE1-220ENST00000458038 DIP2AQ14689 1571 aa32.89■■■□□ 2.86
CPNE1-220ENST00000458038 PIK3R4Q99570 1358 aa32.89■■■□□ 2.86
CPNE1-220ENST00000458038 ITGAEP38570 1179 aa32.87■■■□□ 2.85
CPNE1-220ENST00000458038 ADAMTS13Q76LX8 1427 aa32.84■■■□□ 2.85
CPNE1-220ENST00000458038 RGS17Q9UGC6 210 aaPredicted RBP32.83■■■□□ 2.85
CPNE1-220ENST00000458038 NUTM2DQ5VT03 806 aaPredicted RBP32.79■■■□□ 2.84
CPNE1-220ENST00000458038 C14orf37Q86TY3 774 aa32.79■■■□□ 2.84
CPNE1-220ENST00000458038 C19orf44Q9H6X5 657 aa32.78■■■□□ 2.84
CPNE1-220ENST00000458038 PHLPP1O60346 1717 aa32.77■■■□□ 2.84
CPNE1-220ENST00000458038 CADPS2Q86UW7 1296 aa32.77■■■□□ 2.84
CPNE1-220ENST00000458038 TRPM2O94759 1503 aa32.77■■■□□ 2.84
CPNE1-220ENST00000458038 SPHKAPQ2M3C7 1700 aa32.74■■■□□ 2.83
CPNE1-220ENST00000458038 JCADQ9P266 1359 aa32.74■■■□□ 2.83
CPNE1-220ENST00000458038 PPARGC1BQ86YN6 1023 aaKnown RBP32.74■■■□□ 2.83
CPNE1-220ENST00000458038 ATF3P18847 181 aa32.73■■■□□ 2.83
CPNE1-220ENST00000458038 AMOTL2Q9Y2J4 779 aa32.72■■■□□ 2.83
CPNE1-220ENST00000458038 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.71■■■□□ 2.83
CPNE1-220ENST00000458038 ZNF326Q5BKZ1 582 aaKnown RBP32.66■■■□□ 2.82
CPNE1-220ENST00000458038 RRBP1Q9P2E9 1410 aaKnown RBP32.66■■■□□ 2.82
CPNE1-220ENST00000458038 SETBP1Q9Y6X0 1596 aa32.66■■■□□ 2.82
CPNE1-220ENST00000458038 POTEAQ6S8J7 498 aa32.65■■■□□ 2.82
CPNE1-220ENST00000458038 COL16A1Q07092 1604 aaPredicted RBP32.65■■■□□ 2.82
CPNE1-220ENST00000458038 PTPRUQ92729 1446 aa32.64■■■□□ 2.82
CPNE1-220ENST00000458038 DCCP43146 1447 aa32.63■■■□□ 2.81
CPNE1-220ENST00000458038 SPATA31A6Q5VVP1 1343 aa32.61■■■□□ 2.81
CPNE1-220ENST00000458038 AHDC1Q5TGY3 1603 aaPredicted RBP32.6■■■□□ 2.81
CPNE1-220ENST00000458038 NRXN3Q9Y4C0 1643 aa32.6■■■□□ 2.81
CPNE1-220ENST00000458038 XRN1Q8IZH2 1706 aaKnown RBP32.58■■■□□ 2.81
CPNE1-220ENST00000458038 NAIPQ13075 1403 aa32.58■■■□□ 2.81
CPNE1-220ENST00000458038 KIF1BO60333 1816 aa32.56■■■□□ 2.8
CPNE1-220ENST00000458038 CLTCL1P53675 1640 aa32.54■■■□□ 2.8
CPNE1-220ENST00000458038 BRINP3Q76B58 766 aa32.53■■■□□ 2.8
CPNE1-220ENST00000458038 METP08581 1390 aa32.52■■■□□ 2.8
CPNE1-220ENST00000458038 NEXMIFQ5QGS0 1516 aa32.51■■■□□ 2.8
CPNE1-220ENST00000458038 SHPRHQ149N8 1683 aa32.51■■■□□ 2.79
CPNE1-220ENST00000458038 VGFO15240 615 aaPredicted RBP32.48■■■□□ 2.79
CPNE1-220ENST00000458038 HFM1A2PYH4 1435 aa32.47■■■□□ 2.79
CPNE1-220ENST00000458038 MEX3CQ5U5Q3 659 aaKnown RBP32.47■■■□□ 2.79
CPNE1-220ENST00000458038 ZNF772Q68DY9 489 aaPredicted RBP32.46■■■□□ 2.79
CPNE1-220ENST00000458038 TRIM52Q96A61 297 aa32.46■■■□□ 2.79
CPNE1-220ENST00000458038 MST1RQ04912 1400 aa32.44■■■□□ 2.78
CPNE1-220ENST00000458038 RPGRIP1LQ68CZ1 1315 aa32.44■■■□□ 2.78
CPNE1-220ENST00000458038 LRP6O75581 1613 aa32.44■■■□□ 2.78
CPNE1-220ENST00000458038 ADGRL3Q9HAR2 1447 aa32.43■■■□□ 2.78
CPNE1-220ENST00000458038 ASXL1Q8IXJ9 1541 aa32.43■■■□□ 2.78
CPNE1-220ENST00000458038 SETD5Q9C0A6 1442 aa32.41■■■□□ 2.78
CPNE1-220ENST00000458038 SLC4A1APQ9BWU0 796 aaKnown RBP32.4■■■□□ 2.78
CPNE1-220ENST00000458038 LRRC59Q96AG4 307 aaKnown RBP32.39■■■□□ 2.78
CPNE1-220ENST00000458038 NHSL1Q5SYE7 1610 aa32.38■■■□□ 2.77
CPNE1-220ENST00000458038 PTCH1Q13635 1447 aa32.34■■■□□ 2.77
CPNE1-220ENST00000458038 NALCNQ8IZF0 1738 aa32.34■■■□□ 2.77
CPNE1-220ENST00000458038 NUTM2BA6NNL0 878 aaPredicted RBP32.31■■■□□ 2.76
CPNE1-220ENST00000458038 NUTM2EB1AL46 878 aaPredicted RBP32.31■■■□□ 2.76
CPNE1-220ENST00000458038 NUTM2AQ8IVF1 878 aaPredicted RBP32.31■■■□□ 2.76
CPNE1-220ENST00000458038 PRAG1Q86YV5 1406 aa32.31■■■□□ 2.76
CPNE1-220ENST00000458038 SETD1AO15047 1707 aaKnown RBP32.31■■■□□ 2.76
CPNE1-220ENST00000458038 PPLO60437 1756 aa32.28■■■□□ 2.76
CPNE1-220ENST00000458038 C1orf167Q5SNV9 1468 aa32.27■■■□□ 2.76
CPNE1-220ENST00000458038 RXRBP28702 533 aa32.26■■■□□ 2.75
CPNE1-220ENST00000458038 ROBO2Q9HCK4 1378 aa32.25■■■□□ 2.75
CPNE1-220ENST00000458038 AFF2P51816 1311 aa32.22■■■□□ 2.75
CPNE1-220ENST00000458038 LAMC1P11047 1609 aa32.22■■■□□ 2.75
CPNE1-220ENST00000458038 PNPLA6Q8IY17 1366 aa32.21■■■□□ 2.75
CPNE1-220ENST00000458038 CDK12Q9NYV4 1490 aaPredicted RBP32.21■■■□□ 2.75
CPNE1-220ENST00000458038 DDX17Q92841 729 aaKnown RBP32.2■■■□□ 2.75
CPNE1-220ENST00000458038 ACIN1Q9UKV3 1341 aaKnown RBP32.19■■■□□ 2.74
CPNE1-220ENST00000458038 CCDC144AA2RUR9 1427 aa32.18■■■□□ 2.74
CPNE1-220ENST00000458038 SOS2Q07890 1332 aaPredicted RBP32.16■■■□□ 2.74
CPNE1-220ENST00000458038 ANKRD30BQ9BXX2 1392 aa32.15■■■□□ 2.74
CPNE1-220ENST00000458038 FOXD1Q16676 465 aa32.14■■■□□ 2.74
CPNE1-220ENST00000458038 ORAI2Q96SN7 254 aa32.14■■■□□ 2.74
CPNE1-220ENST00000458038 UPF1Q92900 1129 aaKnown RBP eCLIP32.13■■■□□ 2.73
CPNE1-220ENST00000458038 C8orf37Q96NL8 207 aa32.13■■■□□ 2.73
CPNE1-220ENST00000458038 MPHOSPH9Q99550 1183 aa32.12■■■□□ 2.73
CPNE1-220ENST00000458038 QTRT2Q9H974 415 aaKnown RBP32.1■■■□□ 2.73
CPNE1-220ENST00000458038 SPATA31E1Q6ZUB1 1445 aa32.09■■■□□ 2.73
CPNE1-220ENST00000458038 ADGRF5Q8IZF2 1346 aa32.09■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms